1E8HA

Structure of the h61t mutant of the flavoenzyme vanillyl-alcohol oxidase in the apo form complexed by adp
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
555
structure length
545
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 172
structure length 545
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8hA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8hA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8hA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8hA03
4OALA 1W1RA 1JROA 1FFUC 5FXEA 5AE1A 4O95A 1HSKA 1ZXIC 2YVSA 5AE3A 1UXYA 2Q4WA 2AXRA 3NVWB 1AHZA 2PLIA 3AN1A 1W1KA 3KJMA 2MBRA 5HHZA 2W54A 4PVEA 3ETRB 5D79A 2BVGA 2OAIA 1W1JA 4HG0A 3JS8A 2VFSA 5ADZA 3S1CA 2O3GA 1JRPA 4EC3A 3D2JA 4ML8A 4PZFA 1I19A 1DIIA 1RM6B 2W3SA 3LLBA 1WVEA 3VTEA 5FXDA 4ZOHB 4UD8A 5G5HB 5HQXA 3AM9A 2P3HA 3C0PA 3HRDC 1DIQA 1N5WC 1W1LA 1V97A 1SB3B 2P13A 1QLUA 1E8GA 4BBYA 3SR6B 2NQWA 2E3TA 1W1OA 1WYGA 3NVZB 4DNSA 4PWBA 1N61C 2QPMA 1QLTA 2W55A 2GQUA 2VFUA 3FWAA 1N5XA 3NRZB 3DQ0A 3S1EA 4PVKA 3PM9A 2VAOA 3W8WA 3NVYB 5FXPA 2QKNA 3FW9A 1W1QA 3BW7A 3D2DA 3EUB3 3NVVB 3B9JB 3FW8A 2W3RA 1E8HA 1WVFA 2R2ZA 1FIQB 2BVHA 4PYTA 1VDVA 4JB1A 1AHVA 4PWCA 2RK5A 1N60C 3GSYA 2PLSA 4BC7A 1ZR6A 3TSHA 3TX1A 3AMZA 1VAOA 5AE2A 1E8FA 3W8XA 1DZNA 1AHUA 3W8ZA 1N63C 3FW7A 4MLAA 4BCAA 4XLOA 5FXFA 5HMRA 1W1MA 3S1FA 2VFRA 2VFTA 3NS1B 1FO4A 1N62C 4BC9A 1MBTA 3I99A 5G5GB 2BVFA 2GQTA 1MBBA 4PVHA 1E0YA 2EXRA 2Q85A 2R8DA 3TSJA 3LAEA 2P4PA 1F0XA 2I0KA 4PVJA 3DEDA 2VFVA 1T3QC 1W1SA 3S1DA 1FFVC 4JAYA 3D2HA
chains in the Genus database with same CATH superfamily
4OALA 1W1RA 1JROA 1FFUC 5FXEA 5AE1A 4O95A 1HSKA 1ZXIC 3EJEB 2YVSA 5AE3A 1UXYA 2Q4WA 2AXRA 3NVWB 1AHZA 2PLIA 2Y3RA 2UUUA 3AN1A 1W1KA 3KJMA 2MBRA 5HHZA 2W54A 4PVEA 5L6GA 3ETRB 5AWVA 5D79A 2BVGA 2OAIA 1W1JA 4HG0A 3JS8A 2VFSA 5ADZA 3S1CA 2O3GA 1JRPA 4EC3A 3D2JA 4ML8A 4PZFA 3RJ8A 1I19A 1DIIA 1RM6B 2W3SA 3LLBA 1WVEA 3VTEA 5FXDA 4ZOHB 4UD8A 3POPA 5G5HB 5HQXA 3AM9A 2P3HA 3C0PA 3HRDC 1DIQA 3EJBB 3HSUA 2Y3SA 1N5WC 3PQBA 1W1LA 1V97A 1SB3B 2P13A 2IPIA 1QLUA 1E8GA 4BBYA 3SR6B 2NQWA 2E3TA 1W1OA 1WYGA 3NVZB 4DNSA 2Y4GA 4PWBA 1N61C 5K8EA 2QPMA 1QLTA 2W55A 2GQUA 2VFUA 3FWAA 1N5XA 3NRZB 3DQ0A 3S1EA 3NVYB 3PM9A 2VAOA 4PVKA 3W8WA 5FXPA 2QKNA 3FW9A 1W1QA 3BW7A 3D2DA 3EUB3 5I1VA 3NVVB 3B9JB 3FW8A 2W3RA 1E8HA 1WVFA 2R2ZA 1FIQB 2BVHA 4PYTA 1VDVA 3RJAA 4JB1A 1AHVA 4PWCA 2RK5A 3EJDB 1N60C 3GSYA 2PLSA 2WDWA 4BC7A 1ZR6A 3TSHA 3TX1A 3AMZA 1VAOA 5AE2A 1E8FA 3W8XA 1DZNA 1AHUA 5I1WA 3W8ZA 1N63C 3FW7A 4MLAA 4BCAA 4XLOA 5FXFA 5HMRA 1W1MA 3S1FA 2VFRA 2VFTA 3NS1B 1FO4A 1N62C 4BC9A 1MBTA 3I99A 5G5GB 2Y08A 2BVFA 2GQTA 1MBBA 4PVHA 1E0YA 2EXRA 2Q85A 2R8DA 3TSJA 3LAEA 2P4PA 1F0XA 2I0KA 4PVJA 2UUVA 5L6FA 3DEDA 2VFVA 1T3QC 1W1SA 3S1DA 1FFVC 4JAYA 3D2HA
chains in the Genus database with same CATH topology
4OALA 1W1RA 1JROA 1FFUC 5FXEA 5AE1A 4O95A 1HSKA 1ZXIC 2YVSA 5AE3A 1UXYA 2Q4WA 2AXRA 2Y3RA 1AHZA 2PLIA 3NVWB 2UUUA 3AN1A 1W1KA 3KJMA 2MBRA 5HHZA 2W54A 4PVEA 5L6GA 3ETRB 5AWVA 5D79A 2BVGA 2OAIA 1W1JA 4HG0A 3JS8A 2VFSA 5ADZA 3S1CA 2O3GA 1JRPA 4EC3A 3D2JA 4ML8A 4PZFA 3RJ8A 1I19A 1DIIA 1RM6B 2W3SA 3LLBA 1WVEA 3VTEA 5FXDA 4ZOHB 4UD8A 3POPA 5G5HB 5HQXA 3AM9A 2P3HA 3C0PA 3HRDC 1DIQA 3HSUA 2Y3SA 1N5WC 3PQBA 1W1LA 1V97A 1SB3B 2P13A 2IPIA 1QLUA 1E8GA 4BBYA 3SR6B 2NQWA 2E3TA 1W1OA 1WYGA 3NVZB 4DNSA 2Y4GA 4PWBA 1N61C 5K8EA 2QPMA 1QLTA 2W55A 2GQUA 2VFUA 3FWAA 1N5XA 3NRZB 3DQ0A 3S1EA 4PVKA 3PM9A 2VAOA 3W8WA 3NVYB 5FXPA 2QKNA 3FW9A 1W1QA 3BW7A 3D2DA 3EUB3 5I1VA 3NVVB 3B9JB 3FW8A 2W3RA 1E8HA 1WVFA 2R2ZA 1FIQB 2BVHA 4PYTA 1VDVA 3RJAA 4JB1A 1AHVA 4PWCA 2RK5A 1N60C 3GSYA 2PLSA 2WDWA 4BC7A 1ZR6A 3TSHA 3TX1A 3AMZA 1VAOA 5AE2A 1E8FA 3W8XA 1DZNA 1AHUA 5I1WA 3W8ZA 1N63C 3FW7A 4MLAA 4BCAA 4XLOA 5FXFA 5HMRA 1W1MA 3S1FA 2VFRA 2VFTA 3NS1B 1FO4A 1N62C 4BC9A 1MBTA 3I99A 5G5GB 2Y08A 2BVFA 2GQTA 1MBBA 4PVHA 1E0YA 2EXRA 2Q85A 2R8DA 3TSJA 3LAEA 2P4PA 1F0XA 2I0KA 4PVJA 2UUVA 5L6FA 3DEDA 2VFVA 1T3QC 1W1SA 3S1DA 1FFVC 4JAYA 3D2HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OAL A;  1W1R A;  1JRO A;  1FFU C;  5FXE A;  5AE1 A;  4O95 A;  1HSK A;  1ZXI C;  2YVS A;  5AE3 A;  1UXY A;  2Q4W A;  2AXR A;  3NVW B;  1AHZ A;  2PLI A;  3AN1 A;  1W1K A;  3KJM A;  2MBR A;  5HHZ A;  2W54 A;  4PVE A;  3ETR B;  5D79 A;  2BVG A;  2OAI A;  1W1J A;  4HG0 A;  3JS8 A;  2VFS A;  5ADZ A;  3S1C A;  2O3G A;  1JRP A;  4EC3 A;  3D2J A;  4ML8 A;  4PZF A;  1I19 A;  1DII A;  1RM6 B;  2W3S A;  3LLB A;  1WVE A;  3VTE A;  5FXD A;  4ZOH B;  4UD8 A;  5G5H B;  5HQX A;  3AM9 A;  2P3H A;  3C0P A;  3HRD C;  1DIQ A;  1N5W C;  1W1L A;  1V97 A;  1SB3 B;  2P13 A;  1QLU A;  1E8G A;  4BBY A;  3SR6 B;  2NQW A;  2E3T A;  1W1O A;  1WYG A;  3NVZ B;  4DNS A;  4PWB A;  1N61 C;  2QPM A;  1QLT A;  2W55 A;  2GQU A;  2VFU A;  3FWA A;  1N5X A;  3NRZ B;  3DQ0 A;  3S1E A;  4PVK A;  3PM9 A;  2VAO A;  3W8W A;  3NVY B;  5FXP A;  2QKN A;  3FW9 A;  1W1Q A;  3BW7 A;  3D2D A;  3EUB 3;  3NVV B;  3B9J B;  3FW8 A;  2W3R A;  1E8H A;  1WVF A;  2R2Z A;  1FIQ B;  2BVH A;  4PYT A;  1VDV A;  4JB1 A;  1AHV A;  4PWC A;  2RK5 A;  1N60 C;  3GSY A;  2PLS A;  4BC7 A;  1ZR6 A;  3TSH A;  3TX1 A;  3AMZ A;  1VAO A;  5AE2 A;  1E8F A;  3W8X A;  1DZN A;  1AHU A;  3W8Z A;  1N63 C;  3FW7 A;  4MLA A;  4BCA A;  4XLO A;  5FXF A;  5HMR A;  1W1M A;  3S1F A;  2VFR A;  2VFT A;  3NS1 B;  1FO4 A;  1N62 C;  4BC9 A;  1MBT A;  3I99 A;  5G5G B;  2BVF A;  2GQT A;  1MBB A;  4PVH A;  1E0Y A;  2EXR A;  2Q85 A;  2R8D A;  3TSJ A;  3LAE A;  2P4P A;  1F0X A;  2I0K A;  4PVJ A;  3DED A;  2VFV A;  1T3Q C;  1W1S A;  3S1D A;  1FFV C;  4JAY A;  3D2H A; 
#chains in the Genus database with same CATH topology
 4OAL A;  1W1R A;  1JRO A;  1FFU C;  5FXE A;  5AE1 A;  4O95 A;  1HSK A;  1ZXI C;  3EJE B;  2YVS A;  5AE3 A;  1UXY A;  2Q4W A;  2AXR A;  3NVW B;  1AHZ A;  2PLI A;  2Y3R A;  2UUU A;  3AN1 A;  1W1K A;  3KJM A;  2MBR A;  5HHZ A;  2W54 A;  4PVE A;  5L6G A;  3ETR B;  5AWV A;  5D79 A;  2BVG A;  2OAI A;  1W1J A;  4HG0 A;  3JS8 A;  2VFS A;  5ADZ A;  3S1C A;  2O3G A;  1JRP A;  4EC3 A;  3D2J A;  4ML8 A;  4PZF A;  3RJ8 A;  1I19 A;  1DII A;  1RM6 B;  2W3S A;  3LLB A;  1WVE A;  3VTE A;  5FXD A;  4ZOH B;  4UD8 A;  3POP A;  5G5H B;  5HQX A;  3AM9 A;  2P3H A;  3C0P A;  3HRD C;  1DIQ A;  3EJB B;  3HSU A;  2Y3S A;  1N5W C;  3PQB A;  1W1L A;  1V97 A;  1SB3 B;  2P13 A;  2IPI A;  1QLU A;  1E8G A;  4BBY A;  3SR6 B;  2NQW A;  2E3T A;  1W1O A;  1WYG A;  3NVZ B;  4DNS A;  2Y4G A;  4PWB A;  1N61 C;  5K8E A;  2QPM A;  1QLT A;  2W55 A;  2GQU A;  2VFU A;  3FWA A;  1N5X A;  3NRZ B;  3DQ0 A;  3S1E A;  3NVY B;  3PM9 A;  2VAO A;  4PVK A;  3W8W A;  5FXP A;  2QKN A;  3FW9 A;  1W1Q A;  3BW7 A;  3D2D A;  3EUB 3;  5I1V A;  3NVV B;  3B9J B;  3FW8 A;  2W3R A;  1E8H A;  1WVF A;  2R2Z A;  1FIQ B;  2BVH A;  4PYT A;  1VDV A;  3RJA A;  4JB1 A;  1AHV A;  4PWC A;  2RK5 A;  3EJD B;  1N60 C;  3GSY A;  2PLS A;  2WDW A;  4BC7 A;  1ZR6 A;  3TSH A;  3TX1 A;  3AMZ A;  1VAO A;  5AE2 A;  1E8F A;  3W8X A;  1DZN A;  1AHU A;  5I1W A;  3W8Z A;  1N63 C;  3FW7 A;  4MLA A;  4BCA A;  4XLO A;  5FXF A;  5HMR A;  1W1M A;  3S1F A;  2VFR A;  2VFT A;  3NS1 B;  1FO4 A;  1N62 C;  4BC9 A;  1MBT A;  3I99 A;  5G5G B;  2Y08 A;  2BVF A;  2GQT A;  1MBB A;  4PVH A;  1E0Y A;  2EXR A;  2Q85 A;  2R8D A;  3TSJ A;  3LAE A;  2P4P A;  1F0X A;  2I0K A;  4PVJ A;  2UUV A;  5L6F A;  3DED A;  2VFV A;  1T3Q C;  1W1S A;  3S1D A;  1FFV C;  4JAY A;  3D2H A; 
#chains in the Genus database with same CATH homology
 4OAL A;  1W1R A;  1JRO A;  1FFU C;  5FXE A;  5AE1 A;  4O95 A;  1HSK A;  1ZXI C;  2YVS A;  5AE3 A;  1UXY A;  2Q4W A;  2AXR A;  2Y3R A;  1AHZ A;  2PLI A;  3NVW B;  2UUU A;  3AN1 A;  1W1K A;  3KJM A;  2MBR A;  5HHZ A;  2W54 A;  4PVE A;  5L6G A;  3ETR B;  5AWV A;  5D79 A;  2BVG A;  2OAI A;  1W1J A;  4HG0 A;  3JS8 A;  2VFS A;  5ADZ A;  3S1C A;  2O3G A;  1JRP A;  4EC3 A;  3D2J A;  4ML8 A;  4PZF A;  3RJ8 A;  1I19 A;  1DII A;  1RM6 B;  2W3S A;  3LLB A;  1WVE A;  3VTE A;  5FXD A;  4ZOH B;  4UD8 A;  3POP A;  5G5H B;  5HQX A;  3AM9 A;  2P3H A;  3C0P A;  3HRD C;  1DIQ A;  3HSU A;  2Y3S A;  1N5W C;  3PQB A;  1W1L A;  1V97 A;  1SB3 B;  2P13 A;  2IPI A;  1QLU A;  1E8G A;  4BBY A;  3SR6 B;  2NQW A;  2E3T A;  1W1O A;  1WYG A;  3NVZ B;  4DNS A;  2Y4G A;  4PWB A;  1N61 C;  5K8E A;  2QPM A;  1QLT A;  2W55 A;  2GQU A;  2VFU A;  3FWA A;  1N5X A;  3NRZ B;  3DQ0 A;  3S1E A;  4PVK A;  3PM9 A;  2VAO A;  3W8W A;  3NVY B;  5FXP A;  2QKN A;  3FW9 A;  1W1Q A;  3BW7 A;  3D2D A;  3EUB 3;  5I1V A;  3NVV B;  3B9J B;  3FW8 A;  2W3R A;  1E8H A;  1WVF A;  2R2Z A;  1FIQ B;  2BVH A;  4PYT A;  1VDV A;  3RJA A;  4JB1 A;  1AHV A;  4PWC A;  2RK5 A;  1N60 C;  3GSY A;  2PLS A;  2WDW A;  4BC7 A;  1ZR6 A;  3TSH A;  3TX1 A;  3AMZ A;  1VAO A;  5AE2 A;  1E8F A;  3W8X A;  1DZN A;  1AHU A;  5I1W A;  3W8Z A;  1N63 C;  3FW7 A;  4MLA A;  4BCA A;  4XLO A;  5FXF A;  5HMR A;  1W1M A;  3S1F A;  2VFR A;  2VFT A;  3NS1 B;  1FO4 A;  1N62 C;  4BC9 A;  1MBT A;  3I99 A;  5G5G B;  2Y08 A;  2BVF A;  2GQT A;  1MBB A;  4PVH A;  1E0Y A;  2EXR A;  2Q85 A;  2R8D A;  3TSJ A;  3LAE A;  2P4P A;  1F0X A;  2I0K A;  4PVJ A;  2UUV A;  5L6F A;  3DED A;  2VFV A;  1T3Q C;  1W1S A;  3S1D A;  1FFV C;  4JAY A;  3D2H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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