1E8HA

Structure of the h61t mutant of the flavoenzyme vanillyl-alcohol oxidase in the apo form complexed by adp
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
555
structure length
545
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
total genus 172
structure length 545
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8hA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8hA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8hA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8hA03
5FXDA 3S1CA 4O95A 1AHZA 3ETRB 3AMZA 1MBTA 1W1MA 2GQUA 2P3HA 2R8DA 3FWAA 3NS1B 4OALA 1W1QA 3W8XA 2E3TA 1FO4A 2RK5A 4XLOA 2QKNA 2VFRA 4PVKA 3D2DA 2VAOA 3NVZB 1W1OA 5G5GB 1V97A 3TSJA 4DNSA 5G5HB 2AXRA 4PZFA 2PLIA 4PWCA 4ML8A 1F0XA 1QLTA 2R2ZA 2EXRA 1W1RA 1I19A 1VAOA 2W55A 3FW7A 4PWBA 3S1DA 1E8HA 3FW9A 3W8WA 3S1FA 1N5WC 3AN1A 3D2JA 5FXFA 3W8ZA 5AE3A 1FIQB 2YVSA 3DQ0A 2Q4WA 4PYTA 3NVVB 3EUB3 1JROA 5HQXA 5FXPA 1E0YA 1ZR6A 2P4PA 1ZXIC 4EC3A 4HG0A 2W54A 3BW7A 3LLBA 3I99A 1HSKA 2NQWA 5HMRA 2O3GA 4BCAA 3VTEA 4ZOHB 1FFUC 2VFSA 1N62C 3SR6B 2P13A 2PLSA 1N63C 1DIIA 1RM6B 1DZNA 3S1EA 2BVFA 2QPMA 5D79A 1W1SA 1DIQA 4PVHA 1AHVA 1QLUA 3NVWB 2BVGA 5AE1A 4BC9A 3TSHA 3HRDC 4BC7A 1E8GA 4PVEA 3NVYB 1W1JA 1N61C 5AE2A 2W3SA 3DEDA 1VDVA 2I0KA 1WVFA 1N60C 2MBRA 3C0PA 1W1LA 1N5XA 1WYGA 2VFTA 1WVEA 3JS8A 4MLAA 1SB3B 2OAIA 5FXEA 2BVHA 1MBBA 2Q85A 3GSYA 4JAYA 4JB1A 1FFVC 2VFUA 3KJMA 3NRZB 3D2HA 5ADZA 1E8FA 5HHZA 2W3RA 3AM9A 1AHUA 2VFVA 3LAEA 1UXYA 1T3QC 3FW8A 3B9JB 1W1KA 4BBYA 4UD8A 4PVJA 2GQTA 3TX1A 3PM9A 1JRPA
chains in the Genus database with same CATH superfamily
5FXDA 3S1CA 4O95A 1AHZA 3ETRB 3AMZA 1MBTA 1W1MA 5I1WA 2GQUA 2P3HA 2R8DA 3FWAA 3NS1B 4OALA 1W1QA 3W8XA 2E3TA 1FO4A 5K8EA 2RK5A 4XLOA 2QKNA 5AWVA 2VFRA 4PVKA 3D2DA 2VAOA 3NVZB 1W1OA 5G5GB 1V97A 3TSJA 4DNSA 2UUVA 5G5HB 2AXRA 4PZFA 2PLIA 4PWCA 4ML8A 1F0XA 1QLTA 2R2ZA 2EXRA 3POPA 1W1RA 1I19A 1VAOA 2W55A 3FW7A 4PWBA 3S1DA 1E8HA 3FW9A 3W8WA 3S1FA 1N5WC 3AN1A 3D2JA 5FXFA 3W8ZA 5AE3A 1FIQB 2YVSA 3DQ0A 2Q4WA 3NVVB 4PYTA 5I1VA 3EUB3 1JROA 5HQXA 5FXPA 1E0YA 1ZR6A 2P4PA 1ZXIC 4EC3A 5L6GA 4HG0A 2W54A 3BW7A 3HSUA 3LLBA 3I99A 3RJ8A 1HSKA 2NQWA 5HMRA 2O3GA 4BCAA 3PQBA 3VTEA 4ZOHB 1FFUC 2VFSA 1N62C 3SR6B 2P13A 2PLSA 1N63C 1DIIA 1RM6B 1DZNA 3S1EA 2BVFA 2QPMA 5D79A 1W1SA 1DIQA 2Y4GA 4PVHA 1AHVA 1QLUA 3NVWB 2Y08A 2BVGA 5AE1A 4BC9A 3EJEB 3NVYB 3TSHA 4BC7A 1E8GA 4PVEA 3HRDC 3RJAA 1W1JA 1N61C 5L6FA 5AE2A 2W3SA 2Y3RA 3DEDA 1VDVA 2I0KA 1WVFA 1N60C 2MBRA 3C0PA 1W1LA 1N5XA 1WYGA 2VFTA 1WVEA 3JS8A 3EJDB 4MLAA 1SB3B 2OAIA 5FXEA 2BVHA 1MBBA 2Q85A 3GSYA 4JAYA 4JB1A 1FFVC 2WDWA 3EJBB 2VFUA 3KJMA 3NRZB 3D2HA 5ADZA 1E8FA 5HHZA 2W3RA 3AM9A 1AHUA 2VFVA 2UUUA 3LAEA 1UXYA 1T3QC 3FW8A 3B9JB 2IPIA 1W1KA 4BBYA 4UD8A 4PVJA 2GQTA 2Y3SA 3TX1A 3PM9A 1JRPA
chains in the Genus database with same CATH topology
5FXDA 3S1CA 4O95A 1AHZA 3ETRB 3AMZA 1MBTA 1W1MA 5I1WA 2GQUA 2P3HA 2R8DA 3FWAA 3NS1B 4OALA 1W1QA 3W8XA 2E3TA 1FO4A 5K8EA 2RK5A 4XLOA 2QKNA 5AWVA 2VFRA 4PVKA 3D2DA 2VAOA 3NVZB 1W1OA 5G5GB 1V97A 3TSJA 4DNSA 2UUVA 5G5HB 2AXRA 4PZFA 2PLIA 4PWCA 4ML8A 1F0XA 1QLTA 2R2ZA 2EXRA 3POPA 1W1RA 1I19A 1VAOA 2W55A 3FW7A 4PWBA 3S1DA 1E8HA 3FW9A 3W8WA 3S1FA 1N5WC 3AN1A 3D2JA 5FXFA 3W8ZA 5AE3A 1FIQB 2YVSA 3DQ0A 2Q4WA 4PYTA 3NVVB 5I1VA 3EUB3 1JROA 5HQXA 5FXPA 1E0YA 1ZR6A 2P4PA 1ZXIC 4EC3A 5L6GA 4HG0A 2W54A 3BW7A 3HSUA 3LLBA 3I99A 3RJ8A 1HSKA 2NQWA 5HMRA 2O3GA 4BCAA 3PQBA 3VTEA 4ZOHB 1FFUC 2VFSA 1N62C 3SR6B 2P13A 2PLSA 1N63C 1DIIA 1RM6B 1DZNA 3S1EA 2BVFA 2QPMA 5D79A 1W1SA 1DIQA 2Y4GA 4PVHA 1AHVA 1QLUA 3NVWB 2Y08A 2BVGA 5AE1A 4BC9A 3TSHA 3HRDC 4BC7A 1E8GA 4PVEA 3NVYB 3RJAA 1W1JA 1N61C 5L6FA 5AE2A 2W3SA 2Y3RA 3DEDA 1VDVA 2I0KA 1WVFA 1N60C 2MBRA 3C0PA 1W1LA 1N5XA 1WYGA 2VFTA 1WVEA 3JS8A 4MLAA 1SB3B 2OAIA 5FXEA 2BVHA 1MBBA 2Q85A 3GSYA 4JAYA 4JB1A 1FFVC 2WDWA 2VFUA 3KJMA 3NRZB 3D2HA 5ADZA 1E8FA 5HHZA 2W3RA 3AM9A 1AHUA 2VFVA 2UUUA 3LAEA 1UXYA 1T3QC 3FW8A 3B9JB 2IPIA 1W1KA 4BBYA 4UD8A 4PVJA 2GQTA 2Y3SA 3TX1A 3PM9A 1JRPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FXD A;  3S1C A;  4O95 A;  1AHZ A;  3ETR B;  3AMZ A;  1MBT A;  1W1M A;  2GQU A;  2P3H A;  2R8D A;  3FWA A;  3NS1 B;  4OAL A;  1W1Q A;  3W8X A;  2E3T A;  1FO4 A;  2RK5 A;  4XLO A;  2QKN A;  2VFR A;  4PVK A;  3D2D A;  2VAO A;  3NVZ B;  1W1O A;  5G5G B;  1V97 A;  3TSJ A;  4DNS A;  5G5H B;  2AXR A;  4PZF A;  2PLI A;  4PWC A;  4ML8 A;  1F0X A;  1QLT A;  2R2Z A;  2EXR A;  1W1R A;  1I19 A;  1VAO A;  2W55 A;  3FW7 A;  4PWB A;  3S1D A;  1E8H A;  3FW9 A;  3W8W A;  3S1F A;  1N5W C;  3AN1 A;  3D2J A;  5FXF A;  3W8Z A;  5AE3 A;  1FIQ B;  2YVS A;  3DQ0 A;  2Q4W A;  4PYT A;  3NVV B;  3EUB 3;  1JRO A;  5HQX A;  5FXP A;  1E0Y A;  1ZR6 A;  2P4P A;  1ZXI C;  4EC3 A;  4HG0 A;  2W54 A;  3BW7 A;  3LLB A;  3I99 A;  1HSK A;  2NQW A;  5HMR A;  2O3G A;  4BCA A;  3VTE A;  4ZOH B;  1FFU C;  2VFS A;  1N62 C;  3SR6 B;  2P13 A;  2PLS A;  1N63 C;  1DII A;  1RM6 B;  1DZN A;  3S1E A;  2BVF A;  2QPM A;  5D79 A;  1W1S A;  1DIQ A;  4PVH A;  1AHV A;  1QLU A;  3NVW B;  2BVG A;  5AE1 A;  4BC9 A;  3TSH A;  3HRD C;  4BC7 A;  1E8G A;  4PVE A;  3NVY B;  1W1J A;  1N61 C;  5AE2 A;  2W3S A;  3DED A;  1VDV A;  2I0K A;  1WVF A;  1N60 C;  2MBR A;  3C0P A;  1W1L A;  1N5X A;  1WYG A;  2VFT A;  1WVE A;  3JS8 A;  4MLA A;  1SB3 B;  2OAI A;  5FXE A;  2BVH A;  1MBB A;  2Q85 A;  3GSY A;  4JAY A;  4JB1 A;  1FFV C;  2VFU A;  3KJM A;  3NRZ B;  3D2H A;  5ADZ A;  1E8F A;  5HHZ A;  2W3R A;  3AM9 A;  1AHU A;  2VFV A;  3LAE A;  1UXY A;  1T3Q C;  3FW8 A;  3B9J B;  1W1K A;  4BBY A;  4UD8 A;  4PVJ A;  2GQT A;  3TX1 A;  3PM9 A;  1JRP A; 
#chains in the Genus database with same CATH topology
 5FXD A;  3S1C A;  4O95 A;  1AHZ A;  3ETR B;  3AMZ A;  1MBT A;  1W1M A;  5I1W A;  2GQU A;  2P3H A;  2R8D A;  3FWA A;  3NS1 B;  4OAL A;  1W1Q A;  3W8X A;  2E3T A;  1FO4 A;  5K8E A;  2RK5 A;  4XLO A;  2QKN A;  5AWV A;  2VFR A;  4PVK A;  3D2D A;  2VAO A;  3NVZ B;  1W1O A;  5G5G B;  1V97 A;  3TSJ A;  4DNS A;  2UUV A;  5G5H B;  2AXR A;  4PZF A;  2PLI A;  4PWC A;  4ML8 A;  1F0X A;  1QLT A;  2R2Z A;  2EXR A;  3POP A;  1W1R A;  1I19 A;  1VAO A;  2W55 A;  3FW7 A;  4PWB A;  3S1D A;  1E8H A;  3FW9 A;  3W8W A;  3S1F A;  1N5W C;  3AN1 A;  3D2J A;  5FXF A;  3W8Z A;  5AE3 A;  1FIQ B;  2YVS A;  3DQ0 A;  2Q4W A;  3NVV B;  4PYT A;  5I1V A;  3EUB 3;  1JRO A;  5HQX A;  5FXP A;  1E0Y A;  1ZR6 A;  2P4P A;  1ZXI C;  4EC3 A;  5L6G A;  4HG0 A;  2W54 A;  3BW7 A;  3HSU A;  3LLB A;  3I99 A;  3RJ8 A;  1HSK A;  2NQW A;  5HMR A;  2O3G A;  4BCA A;  3PQB A;  3VTE A;  4ZOH B;  1FFU C;  2VFS A;  1N62 C;  3SR6 B;  2P13 A;  2PLS A;  1N63 C;  1DII A;  1RM6 B;  1DZN A;  3S1E A;  2BVF A;  2QPM A;  5D79 A;  1W1S A;  1DIQ A;  2Y4G A;  4PVH A;  1AHV A;  1QLU A;  3NVW B;  2Y08 A;  2BVG A;  5AE1 A;  4BC9 A;  3EJE B;  3NVY B;  3TSH A;  4BC7 A;  1E8G A;  4PVE A;  3HRD C;  3RJA A;  1W1J A;  1N61 C;  5L6F A;  5AE2 A;  2W3S A;  2Y3R A;  3DED A;  1VDV A;  2I0K A;  1WVF A;  1N60 C;  2MBR A;  3C0P A;  1W1L A;  1N5X A;  1WYG A;  2VFT A;  1WVE A;  3JS8 A;  3EJD B;  4MLA A;  1SB3 B;  2OAI A;  5FXE A;  2BVH A;  1MBB A;  2Q85 A;  3GSY A;  4JAY A;  4JB1 A;  1FFV C;  2WDW A;  3EJB B;  2VFU A;  3KJM A;  3NRZ B;  3D2H A;  5ADZ A;  1E8F A;  5HHZ A;  2W3R A;  3AM9 A;  1AHU A;  2VFV A;  2UUU A;  3LAE A;  1UXY A;  1T3Q C;  3FW8 A;  3B9J B;  2IPI A;  1W1K A;  4BBY A;  4UD8 A;  4PVJ A;  2GQT A;  2Y3S A;  3TX1 A;  3PM9 A;  1JRP A; 
#chains in the Genus database with same CATH homology
 5FXD A;  3S1C A;  4O95 A;  1AHZ A;  3ETR B;  3AMZ A;  1MBT A;  1W1M A;  5I1W A;  2GQU A;  2P3H A;  2R8D A;  3FWA A;  3NS1 B;  4OAL A;  1W1Q A;  3W8X A;  2E3T A;  1FO4 A;  5K8E A;  2RK5 A;  4XLO A;  2QKN A;  5AWV A;  2VFR A;  4PVK A;  3D2D A;  2VAO A;  3NVZ B;  1W1O A;  5G5G B;  1V97 A;  3TSJ A;  4DNS A;  2UUV A;  5G5H B;  2AXR A;  4PZF A;  2PLI A;  4PWC A;  4ML8 A;  1F0X A;  1QLT A;  2R2Z A;  2EXR A;  3POP A;  1W1R A;  1I19 A;  1VAO A;  2W55 A;  3FW7 A;  4PWB A;  3S1D A;  1E8H A;  3FW9 A;  3W8W A;  3S1F A;  1N5W C;  3AN1 A;  3D2J A;  5FXF A;  3W8Z A;  5AE3 A;  1FIQ B;  2YVS A;  3DQ0 A;  2Q4W A;  4PYT A;  3NVV B;  5I1V A;  3EUB 3;  1JRO A;  5HQX A;  5FXP A;  1E0Y A;  1ZR6 A;  2P4P A;  1ZXI C;  4EC3 A;  5L6G A;  4HG0 A;  2W54 A;  3BW7 A;  3HSU A;  3LLB A;  3I99 A;  3RJ8 A;  1HSK A;  2NQW A;  5HMR A;  2O3G A;  4BCA A;  3PQB A;  3VTE A;  4ZOH B;  1FFU C;  2VFS A;  1N62 C;  3SR6 B;  2P13 A;  2PLS A;  1N63 C;  1DII A;  1RM6 B;  1DZN A;  3S1E A;  2BVF A;  2QPM A;  5D79 A;  1W1S A;  1DIQ A;  2Y4G A;  4PVH A;  1AHV A;  1QLU A;  3NVW B;  2Y08 A;  2BVG A;  5AE1 A;  4BC9 A;  3TSH A;  3HRD C;  4BC7 A;  1E8G A;  4PVE A;  3NVY B;  3RJA A;  1W1J A;  1N61 C;  5L6F A;  5AE2 A;  2W3S A;  2Y3R A;  3DED A;  1VDV A;  2I0K A;  1WVF A;  1N60 C;  2MBR A;  3C0P A;  1W1L A;  1N5X A;  1WYG A;  2VFT A;  1WVE A;  3JS8 A;  4MLA A;  1SB3 B;  2OAI A;  5FXE A;  2BVH A;  1MBB A;  2Q85 A;  3GSY A;  4JAY A;  4JB1 A;  1FFV C;  2WDW A;  2VFU A;  3KJM A;  3NRZ B;  3D2H A;  5ADZ A;  1E8F A;  5HHZ A;  2W3R A;  3AM9 A;  1AHU A;  2VFV A;  2UUU A;  3LAE A;  1UXY A;  1T3Q C;  3FW8 A;  3B9J B;  2IPI A;  1W1K A;  4BBY A;  4UD8 A;  4PVJ A;  2GQT A;  2Y3S A;  3TX1 A;  3PM9 A;  1JRP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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