1E8HA

Structure of the h61t mutant of the flavoenzyme vanillyl-alcohol oxidase in the apo form complexed by adp
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
555
structure length
545
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords VANILLYL-ALCOHOL OXIDASE
publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Oxidoreductase
total genus 172
structure length 545
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8hA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8hA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8hA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8hA03
3I99A 5AE2A 1N5WC 1MBBA 5D79A 3AMZA 2MBRA 2BVFA 3NVZB 2W54A 1W1KA 5HQXA 1DZNA 2PLSA 1W1OA 1E0YA 3NVWB 3VTEA 3TSJA 1W1SA 4PZFA 5FXEA 4UD8A 1F0XA 1W1RA 1AHZA 3PM9A 2QKNA 4BCAA 5AE3A 1I19A 4PVHA 1QLUA 2VFUA 1E8FA 1ZR6A 1V97A 3DQ0A 4PYTA 2VFSA 3D2JA 4PWBA 3S1CA 4MLAA 2GQTA 2P4PA 5FXDA 1MBTA 3HRDC 2BVHA 2VFRA 3AM9A 3B9JB 3C0PA 1FO4A 4BC7A 1T3QC 1FIQB 2E3TA 1WVEA 1FFVC 1FFUC 4JB1A 3FWAA 2EXRA 2NQWA 3TSHA 5AE1A 1WVFA 2R2ZA 2OAIA 2GQUA 5HHZA 2Q85A 4OALA 1N63C 1N61C 4ZOHB 2I0KA 5ADZA 3S1DA 1AHUA 4XLOA 3SR6B 3GSYA 3S1EA 3KJMA 5G5HB 1E8HA 3W8WA 1VDVA 2W55A 4ML8A 4JAYA 1UXYA 1ZXIC 4PVEA 3NVYB 1N5XA 1N60C 3JS8A 1VAOA 2Q4WA 2R8DA 2YVSA 2VFTA 4PVJA 2BVGA 1DIIA 2RK5A 3BW7A 3NVVB 1AHVA 3FW7A 3AN1A 2W3SA 1WYGA 3D2DA 5FXPA 3FW8A 1E8GA 4O95A 3DEDA 3LAEA 1W1LA 3D2HA 4PVKA 3W8ZA 1W1MA 2AXRA 1JRPA 1QLTA 3LLBA 1JROA 1W1JA 4HG0A 1W1QA 3S1FA 3W8XA 2QPMA 4BC9A 1SB3B 2W3RA 2VFVA 5FXFA 2P3HA 1HSKA 3TX1A 3NRZB 4DNSA 4EC3A 3ETRB 3NS1B 5HMRA 2P13A 4BBYA 4PWCA 2VAOA 1N62C 3FW9A 2O3GA 3EUB3 1RM6B 5G5GB 1DIQA 2PLIA
chains in the Genus database with same CATH superfamily
3I99A 5AE2A 1N5WC 1MBBA 5D79A 3AMZA 2MBRA 2BVFA 3NVZB 2W54A 1W1KA 5HQXA 1DZNA 2PLSA 1W1OA 5L6FA 1E0YA 3NVWB 3VTEA 3TSJA 1W1SA 4PZFA 5FXEA 4UD8A 1F0XA 1W1RA 2UUUA 3EJDB 1AHZA 3POPA 3PM9A 2QKNA 4BCAA 2Y3RA 2Y3SA 5AE3A 1I19A 5I1VA 4PVHA 1QLUA 2VFUA 1E8FA 1ZR6A 1V97A 3DQ0A 4PYTA 2VFSA 3D2JA 4PWBA 3S1CA 4MLAA 2GQTA 2P4PA 5FXDA 1MBTA 3HRDC 5L6GA 2BVHA 2VFRA 3AM9A 3B9JB 3C0PA 1FO4A 4BC7A 1T3QC 1FIQB 2E3TA 1WVEA 1FFVC 1FFUC 4JB1A 3FWAA 2EXRA 2NQWA 3TSHA 5AE1A 1WVFA 2R2ZA 2OAIA 2GQUA 5HHZA 2Q85A 4OALA 1N63C 1N61C 4ZOHB 2I0KA 5ADZA 3S1DA 1AHUA 4XLOA 3SR6B 3GSYA 3S1EA 3KJMA 5G5HB 3RJ8A 1E8HA 3W8WA 1VDVA 2W55A 4ML8A 4JAYA 1UXYA 1ZXIC 3NVYB 4PVEA 2Y08A 1N5XA 1N60C 3HSUA 5K8EA 3JS8A 1VAOA 2Q4WA 2R8DA 2Y4GA 2YVSA 2VFTA 3PQBA 4PVJA 2BVGA 1DIIA 2RK5A 3BW7A 3NVVB 3EJBB 1AHVA 3FW7A 3AN1A 2W3SA 2WDWA 1WYGA 5AWVA 3D2DA 5FXPA 3FW8A 1E8GA 4O95A 3DEDA 3LAEA 1W1LA 5I1WA 3D2HA 3EJEB 4PVKA 3W8ZA 1W1MA 2AXRA 1JRPA 1QLTA 2IPIA 3LLBA 1JROA 1W1JA 4HG0A 1W1QA 3S1FA 3W8XA 2QPMA 4BC9A 1SB3B 2W3RA 2VFVA 5FXFA 2P3HA 2UUVA 1HSKA 3TX1A 3NRZB 4DNSA 4EC3A 3ETRB 3NS1B 5HMRA 2P13A 4BBYA 4PWCA 2VAOA 1N62C 3FW9A 2O3GA 3EUB3 1RM6B 5G5GB 3RJAA 1DIQA 2PLIA
chains in the Genus database with same CATH topology
3I99A 5AE2A 1N5WC 1MBBA 5D79A 3AMZA 2MBRA 2BVFA 3NVZB 2W54A 1W1KA 5HQXA 1DZNA 2PLSA 1W1OA 5L6FA 1E0YA 3NVWB 3VTEA 3TSJA 1W1SA 4PZFA 5FXEA 4UD8A 1F0XA 1W1RA 2UUUA 1AHZA 3POPA 3PM9A 2QKNA 4BCAA 2Y3RA 2Y3SA 5AE3A 1I19A 5I1VA 4PVHA 1QLUA 2VFUA 1E8FA 1ZR6A 1V97A 3DQ0A 4PYTA 2VFSA 3D2JA 4PWBA 3S1CA 4MLAA 2GQTA 2P4PA 5FXDA 1MBTA 3HRDC 5L6GA 2BVHA 2VFRA 3AM9A 3B9JB 3C0PA 1FO4A 4BC7A 1T3QC 1FIQB 2E3TA 1WVEA 1FFVC 1FFUC 4JB1A 3FWAA 2EXRA 2NQWA 3TSHA 5AE1A 1WVFA 2R2ZA 2OAIA 2GQUA 5HHZA 2Q85A 4OALA 1N63C 1N61C 4ZOHB 2I0KA 5ADZA 3S1DA 1AHUA 4XLOA 3SR6B 3GSYA 3S1EA 3KJMA 5G5HB 3RJ8A 1E8HA 3W8WA 1VDVA 2W55A 4ML8A 4JAYA 1UXYA 1ZXIC 4PVEA 3NVYB 2Y08A 1N5XA 1N60C 3HSUA 5K8EA 3JS8A 1VAOA 2Q4WA 2R8DA 2Y4GA 2YVSA 2VFTA 3PQBA 4PVJA 2BVGA 1DIIA 2RK5A 3BW7A 3NVVB 1AHVA 3FW7A 3AN1A 2W3SA 2WDWA 1WYGA 5AWVA 3D2DA 5FXPA 3FW8A 1E8GA 4O95A 3DEDA 3LAEA 1W1LA 5I1WA 3D2HA 4PVKA 3W8ZA 1W1MA 2AXRA 1JRPA 1QLTA 2IPIA 3LLBA 1JROA 1W1JA 4HG0A 1W1QA 3S1FA 3W8XA 2QPMA 4BC9A 1SB3B 2W3RA 2VFVA 5FXFA 2P3HA 2UUVA 1HSKA 3TX1A 3NRZB 4DNSA 4EC3A 3ETRB 3NS1B 5HMRA 2P13A 4BBYA 4PWCA 2VAOA 1N62C 3FW9A 2O3GA 3EUB3 1RM6B 5G5GB 3RJAA 1DIQA 2PLIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I99 A;  5AE2 A;  1N5W C;  1MBB A;  5D79 A;  3AMZ A;  2MBR A;  2BVF A;  3NVZ B;  2W54 A;  1W1K A;  5HQX A;  1DZN A;  2PLS A;  1W1O A;  1E0Y A;  3NVW B;  3VTE A;  3TSJ A;  1W1S A;  4PZF A;  5FXE A;  4UD8 A;  1F0X A;  1W1R A;  1AHZ A;  3PM9 A;  2QKN A;  4BCA A;  5AE3 A;  1I19 A;  4PVH A;  1QLU A;  2VFU A;  1E8F A;  1ZR6 A;  1V97 A;  3DQ0 A;  4PYT A;  2VFS A;  3D2J A;  4PWB A;  3S1C A;  4MLA A;  2GQT A;  2P4P A;  5FXD A;  1MBT A;  3HRD C;  2BVH A;  2VFR A;  3AM9 A;  3B9J B;  3C0P A;  1FO4 A;  4BC7 A;  1T3Q C;  1FIQ B;  2E3T A;  1WVE A;  1FFV C;  1FFU C;  4JB1 A;  3FWA A;  2EXR A;  2NQW A;  3TSH A;  5AE1 A;  1WVF A;  2R2Z A;  2OAI A;  2GQU A;  5HHZ A;  2Q85 A;  4OAL A;  1N63 C;  1N61 C;  4ZOH B;  2I0K A;  5ADZ A;  3S1D A;  1AHU A;  4XLO A;  3SR6 B;  3GSY A;  3S1E A;  3KJM A;  5G5H B;  1E8H A;  3W8W A;  1VDV A;  2W55 A;  4ML8 A;  4JAY A;  1UXY A;  1ZXI C;  4PVE A;  3NVY B;  1N5X A;  1N60 C;  3JS8 A;  1VAO A;  2Q4W A;  2R8D A;  2YVS A;  2VFT A;  4PVJ A;  2BVG A;  1DII A;  2RK5 A;  3BW7 A;  3NVV B;  1AHV A;  3FW7 A;  3AN1 A;  2W3S A;  1WYG A;  3D2D A;  5FXP A;  3FW8 A;  1E8G A;  4O95 A;  3DED A;  3LAE A;  1W1L A;  3D2H A;  4PVK A;  3W8Z A;  1W1M A;  2AXR A;  1JRP A;  1QLT A;  3LLB A;  1JRO A;  1W1J A;  4HG0 A;  1W1Q A;  3S1F A;  3W8X A;  2QPM A;  4BC9 A;  1SB3 B;  2W3R A;  2VFV A;  5FXF A;  2P3H A;  1HSK A;  3TX1 A;  3NRZ B;  4DNS A;  4EC3 A;  3ETR B;  3NS1 B;  5HMR A;  2P13 A;  4BBY A;  4PWC A;  2VAO A;  1N62 C;  3FW9 A;  2O3G A;  3EUB 3;  1RM6 B;  5G5G B;  1DIQ A;  2PLI A; 
#chains in the Genus database with same CATH topology
 3I99 A;  5AE2 A;  1N5W C;  1MBB A;  5D79 A;  3AMZ A;  2MBR A;  2BVF A;  3NVZ B;  2W54 A;  1W1K A;  5HQX A;  1DZN A;  2PLS A;  1W1O A;  5L6F A;  1E0Y A;  3NVW B;  3VTE A;  3TSJ A;  1W1S A;  4PZF A;  5FXE A;  4UD8 A;  1F0X A;  1W1R A;  2UUU A;  3EJD B;  1AHZ A;  3POP A;  3PM9 A;  2QKN A;  4BCA A;  2Y3R A;  2Y3S A;  5AE3 A;  1I19 A;  5I1V A;  4PVH A;  1QLU A;  2VFU A;  1E8F A;  1ZR6 A;  1V97 A;  3DQ0 A;  4PYT A;  2VFS A;  3D2J A;  4PWB A;  3S1C A;  4MLA A;  2GQT A;  2P4P A;  5FXD A;  1MBT A;  3HRD C;  5L6G A;  2BVH A;  2VFR A;  3AM9 A;  3B9J B;  3C0P A;  1FO4 A;  4BC7 A;  1T3Q C;  1FIQ B;  2E3T A;  1WVE A;  1FFV C;  1FFU C;  4JB1 A;  3FWA A;  2EXR A;  2NQW A;  3TSH A;  5AE1 A;  1WVF A;  2R2Z A;  2OAI A;  2GQU A;  5HHZ A;  2Q85 A;  4OAL A;  1N63 C;  1N61 C;  4ZOH B;  2I0K A;  5ADZ A;  3S1D A;  1AHU A;  4XLO A;  3SR6 B;  3GSY A;  3S1E A;  3KJM A;  5G5H B;  3RJ8 A;  1E8H A;  3W8W A;  1VDV A;  2W55 A;  4ML8 A;  4JAY A;  1UXY A;  1ZXI C;  3NVY B;  4PVE A;  2Y08 A;  1N5X A;  1N60 C;  3HSU A;  5K8E A;  3JS8 A;  1VAO A;  2Q4W A;  2R8D A;  2Y4G A;  2YVS A;  2VFT A;  3PQB A;  4PVJ A;  2BVG A;  1DII A;  2RK5 A;  3BW7 A;  3NVV B;  3EJB B;  1AHV A;  3FW7 A;  3AN1 A;  2W3S A;  2WDW A;  1WYG A;  5AWV A;  3D2D A;  5FXP A;  3FW8 A;  1E8G A;  4O95 A;  3DED A;  3LAE A;  1W1L A;  5I1W A;  3D2H A;  3EJE B;  4PVK A;  3W8Z A;  1W1M A;  2AXR A;  1JRP A;  1QLT A;  2IPI A;  3LLB A;  1JRO A;  1W1J A;  4HG0 A;  1W1Q A;  3S1F A;  3W8X A;  2QPM A;  4BC9 A;  1SB3 B;  2W3R A;  2VFV A;  5FXF A;  2P3H A;  2UUV A;  1HSK A;  3TX1 A;  3NRZ B;  4DNS A;  4EC3 A;  3ETR B;  3NS1 B;  5HMR A;  2P13 A;  4BBY A;  4PWC A;  2VAO A;  1N62 C;  3FW9 A;  2O3G A;  3EUB 3;  1RM6 B;  5G5G B;  3RJA A;  1DIQ A;  2PLI A; 
#chains in the Genus database with same CATH homology
 3I99 A;  5AE2 A;  1N5W C;  1MBB A;  5D79 A;  3AMZ A;  2MBR A;  2BVF A;  3NVZ B;  2W54 A;  1W1K A;  5HQX A;  1DZN A;  2PLS A;  1W1O A;  5L6F A;  1E0Y A;  3NVW B;  3VTE A;  3TSJ A;  1W1S A;  4PZF A;  5FXE A;  4UD8 A;  1F0X A;  1W1R A;  2UUU A;  1AHZ A;  3POP A;  3PM9 A;  2QKN A;  4BCA A;  2Y3R A;  2Y3S A;  5AE3 A;  1I19 A;  5I1V A;  4PVH A;  1QLU A;  2VFU A;  1E8F A;  1ZR6 A;  1V97 A;  3DQ0 A;  4PYT A;  2VFS A;  3D2J A;  4PWB A;  3S1C A;  4MLA A;  2GQT A;  2P4P A;  5FXD A;  1MBT A;  3HRD C;  5L6G A;  2BVH A;  2VFR A;  3AM9 A;  3B9J B;  3C0P A;  1FO4 A;  4BC7 A;  1T3Q C;  1FIQ B;  2E3T A;  1WVE A;  1FFV C;  1FFU C;  4JB1 A;  3FWA A;  2EXR A;  2NQW A;  3TSH A;  5AE1 A;  1WVF A;  2R2Z A;  2OAI A;  2GQU A;  5HHZ A;  2Q85 A;  4OAL A;  1N63 C;  1N61 C;  4ZOH B;  2I0K A;  5ADZ A;  3S1D A;  1AHU A;  4XLO A;  3SR6 B;  3GSY A;  3S1E A;  3KJM A;  5G5H B;  3RJ8 A;  1E8H A;  3W8W A;  1VDV A;  2W55 A;  4ML8 A;  4JAY A;  1UXY A;  1ZXI C;  4PVE A;  3NVY B;  2Y08 A;  1N5X A;  1N60 C;  3HSU A;  5K8E A;  3JS8 A;  1VAO A;  2Q4W A;  2R8D A;  2Y4G A;  2YVS A;  2VFT A;  3PQB A;  4PVJ A;  2BVG A;  1DII A;  2RK5 A;  3BW7 A;  3NVV B;  1AHV A;  3FW7 A;  3AN1 A;  2W3S A;  2WDW A;  1WYG A;  5AWV A;  3D2D A;  5FXP A;  3FW8 A;  1E8G A;  4O95 A;  3DED A;  3LAE A;  1W1L A;  5I1W A;  3D2H A;  4PVK A;  3W8Z A;  1W1M A;  2AXR A;  1JRP A;  1QLT A;  2IPI A;  3LLB A;  1JRO A;  1W1J A;  4HG0 A;  1W1Q A;  3S1F A;  3W8X A;  2QPM A;  4BC9 A;  1SB3 B;  2W3R A;  2VFV A;  5FXF A;  2P3H A;  2UUV A;  1HSK A;  3TX1 A;  3NRZ B;  4DNS A;  4EC3 A;  3ETR B;  3NS1 B;  5HMR A;  2P13 A;  4BBY A;  4PWC A;  2VAO A;  1N62 C;  3FW9 A;  2O3G A;  3EUB 3;  1RM6 B;  5G5G B;  3RJA A;  1DIQ A;  2PLI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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