1E8HA

Structure of the h61t mutant of the flavoenzyme vanillyl-alcohol oxidase in the apo form complexed by adp
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
555
structure length
545
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
source organism Penicillium simplicissimum
molecule tags Oxidoreductase
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 172
structure length 545
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8hA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8hA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8hA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8hA03
5FXFA 3TX1A 4BC7A 5HQXA 2GQUA 1N63C 4XLOA 1UXYA 4JB1A 1VAOA 3EUB3 4PVEA 3W8WA 3AMZA 3I99A 1DZNA 3NRZB 3S1CA 1E8GA 3GSYA 1SB3B 5D79A 5HHZA 1JRPA 1AHUA 2VFRA 2W3SA 1N62C 4PVHA 1T3QC 1FFUC 1E0YA 2VFVA 3SR6B 3FW7A 4HG0A 2EXRA 4JAYA 3W8ZA 1W1RA 3PM9A 1WYGA 5FXPA 4ZOHB 4MLAA 3W8XA 5FXEA 5G5HB 2QKNA 1DIIA 2W3RA 1W1KA 1MBBA 4ML8A 3S1FA 2W54A 5G5GB 3NS1B 2P3HA 5HMRA 2I0KA 2W55A 2Q85A 5AE3A 1AHZA 3AN1A 1JROA 2R8DA 1FO4A 1WVEA 3BW7A 1W1JA 1F0XA 1N5WC 3NVVB 2VAOA 4BBYA 1FFVC 4UD8A 3TSHA 2QPMA 2GQTA 4PWCA 1E8FA 4PVKA 3KJMA 2RK5A 2VFUA 5ADZA 3FW8A 3VTEA 1DIQA 1ZR6A 2NQWA 3D2DA 3NVWB 1W1LA 4OALA 1QLUA 1I19A 1W1SA 2BVHA 3B9JB 3S1EA 3D2HA 2OAIA 2P13A 1E8HA 3C0PA 2O3GA 4O95A 3D2JA 3FW9A 3AM9A 1RM6B 1W1MA 3JS8A 3LAEA 3TSJA 1V97A 4BCAA 5AE1A 4BC9A 3S1DA 1N5XA 1MBTA 1W1OA 3HRDC 2PLIA 3NVZB 4PZFA 2E3TA 2VFSA 3NVYB 1FIQB 5AE2A 1VDVA 4PYTA 1N60C 4PWBA 2R2ZA 1ZXIC 2AXRA 4PVJA 2MBRA 2YVSA 2VFTA 5FXDA 2BVGA 2BVFA 2Q4WA 3FWAA 3DEDA 1HSKA 3ETRB 3DQ0A 4DNSA 1QLTA 2PLSA 2P4PA 1AHVA 1W1QA 4EC3A 3LLBA 1WVFA 1N61C
chains in the Genus database with same CATH superfamily
5FXFA 3TX1A 4BC7A 5HQXA 2GQUA 1N63C 4XLOA 1UXYA 4JB1A 1VAOA 3EUB3 4PVEA 3W8WA 5I1VA 3AMZA 3I99A 1DZNA 5AWVA 3NRZB 3HSUA 3S1CA 1E8GA 3GSYA 1SB3B 5D79A 3RJ8A 5HHZA 1JRPA 1AHUA 3RJAA 2VFRA 2W3SA 1N62C 4PVHA 1T3QC 1FFUC 1E0YA 2VFVA 3SR6B 3FW7A 2Y3RA 4HG0A 2EXRA 4JAYA 3W8ZA 1W1RA 5L6GA 3PM9A 1WYGA 5FXPA 4ZOHB 4MLAA 3W8XA 5FXEA 5G5HB 2QKNA 1DIIA 2W3RA 1W1KA 1MBBA 4ML8A 3S1FA 2W54A 5G5GB 3POPA 2UUUA 3NS1B 2P3HA 3EJEB 5HMRA 2I0KA 2W55A 2Q85A 5AE3A 1AHZA 3AN1A 1JROA 2R8DA 1FO4A 1WVEA 3BW7A 1W1JA 1F0XA 1N5WC 3NVVB 2VAOA 4BBYA 1FFVC 4UD8A 3TSHA 2QPMA 2GQTA 4PWCA 1E8FA 4PVKA 3KJMA 2RK5A 2VFUA 5ADZA 3FW8A 3VTEA 1DIQA 1ZR6A 2NQWA 3D2DA 3NVWB 1W1LA 4OALA 1QLUA 1I19A 1W1SA 2BVHA 3B9JB 3S1EA 3D2HA 2OAIA 2P13A 2IPIA 1E8HA 3C0PA 2O3GA 2Y4GA 2UUVA 4O95A 3D2JA 3FW9A 3AM9A 1RM6B 2Y3SA 1W1MA 3JS8A 3LAEA 3TSJA 1V97A 4BCAA 5AE1A 4BC9A 3S1DA 1N5XA 1MBTA 1W1OA 3HRDC 2PLIA 3NVZB 4PZFA 2E3TA 2VFSA 3NVYB 3PQBA 1FIQB 5AE2A 1VDVA 4PYTA 1N60C 4PWBA 2R2ZA 1ZXIC 2AXRA 4PVJA 2MBRA 2YVSA 2VFTA 5FXDA 2BVGA 2BVFA 2Q4WA 3FWAA 2Y08A 3DEDA 3EJDB 1HSKA 3ETRB 3EJBB 5K8EA 3DQ0A 5L6FA 5I1WA 4DNSA 1QLTA 2WDWA 2PLSA 2P4PA 1AHVA 1W1QA 4EC3A 3LLBA 1WVFA 1N61C
chains in the Genus database with same CATH topology
5FXFA 3TX1A 4BC7A 5HQXA 2GQUA 1N63C 4XLOA 1UXYA 4JB1A 1VAOA 3EUB3 4PVEA 3W8WA 5I1VA 3AMZA 3I99A 1DZNA 5AWVA 3NRZB 3HSUA 3S1CA 1E8GA 3GSYA 1SB3B 5D79A 3RJ8A 5HHZA 1JRPA 1AHUA 3RJAA 2VFRA 2W3SA 1N62C 4PVHA 1T3QC 1FFUC 1E0YA 2VFVA 3SR6B 3FW7A 2Y3RA 4HG0A 2EXRA 4JAYA 3W8ZA 1W1RA 5L6GA 3PM9A 1WYGA 5FXPA 4ZOHB 4MLAA 3W8XA 5FXEA 5G5HB 2QKNA 1DIIA 2W3RA 1W1KA 1MBBA 4ML8A 3S1FA 2W54A 5G5GB 3POPA 2UUUA 3NS1B 2P3HA 5HMRA 2I0KA 2W55A 2Q85A 5AE3A 1AHZA 3AN1A 1JROA 2R8DA 1FO4A 1WVEA 3BW7A 1W1JA 1F0XA 1N5WC 3NVVB 2VAOA 4BBYA 1FFVC 4UD8A 3TSHA 2QPMA 2GQTA 4PWCA 1E8FA 4PVKA 3KJMA 2RK5A 2VFUA 5ADZA 3FW8A 3VTEA 1DIQA 1ZR6A 2NQWA 3D2DA 3NVWB 1W1LA 4OALA 1QLUA 1I19A 1W1SA 2BVHA 3B9JB 3S1EA 3D2HA 2OAIA 2P13A 2IPIA 1E8HA 3C0PA 2O3GA 2Y4GA 2UUVA 4O95A 3D2JA 3FW9A 3AM9A 1RM6B 2Y3SA 1W1MA 3JS8A 3LAEA 3TSJA 1V97A 4BCAA 5AE1A 4BC9A 3S1DA 1N5XA 1MBTA 1W1OA 3HRDC 2PLIA 3NVZB 4PZFA 2E3TA 2VFSA 3NVYB 3PQBA 1FIQB 5AE2A 1VDVA 4PYTA 1N60C 4PWBA 2R2ZA 1ZXIC 2AXRA 4PVJA 2MBRA 2YVSA 2VFTA 5FXDA 2BVGA 2BVFA 2Q4WA 3FWAA 2Y08A 3DEDA 1HSKA 3ETRB 5K8EA 3DQ0A 5L6FA 5I1WA 4DNSA 1QLTA 2WDWA 2PLSA 2P4PA 1AHVA 1W1QA 4EC3A 3LLBA 1WVFA 1N61C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FXF A;  3TX1 A;  4BC7 A;  5HQX A;  2GQU A;  1N63 C;  4XLO A;  1UXY A;  4JB1 A;  1VAO A;  3EUB 3;  4PVE A;  3W8W A;  3AMZ A;  3I99 A;  1DZN A;  3NRZ B;  3S1C A;  1E8G A;  3GSY A;  1SB3 B;  5D79 A;  5HHZ A;  1JRP A;  1AHU A;  2VFR A;  2W3S A;  1N62 C;  4PVH A;  1T3Q C;  1FFU C;  1E0Y A;  2VFV A;  3SR6 B;  3FW7 A;  4HG0 A;  2EXR A;  4JAY A;  3W8Z A;  1W1R A;  3PM9 A;  1WYG A;  5FXP A;  4ZOH B;  4MLA A;  3W8X A;  5FXE A;  5G5H B;  2QKN A;  1DII A;  2W3R A;  1W1K A;  1MBB A;  4ML8 A;  3S1F A;  2W54 A;  5G5G B;  3NS1 B;  2P3H A;  5HMR A;  2I0K A;  2W55 A;  2Q85 A;  5AE3 A;  1AHZ A;  3AN1 A;  1JRO A;  2R8D A;  1FO4 A;  1WVE A;  3BW7 A;  1W1J A;  1F0X A;  1N5W C;  3NVV B;  2VAO A;  4BBY A;  1FFV C;  4UD8 A;  3TSH A;  2QPM A;  2GQT A;  4PWC A;  1E8F A;  4PVK A;  3KJM A;  2RK5 A;  2VFU A;  5ADZ A;  3FW8 A;  3VTE A;  1DIQ A;  1ZR6 A;  2NQW A;  3D2D A;  3NVW B;  1W1L A;  4OAL A;  1QLU A;  1I19 A;  1W1S A;  2BVH A;  3B9J B;  3S1E A;  3D2H A;  2OAI A;  2P13 A;  1E8H A;  3C0P A;  2O3G A;  4O95 A;  3D2J A;  3FW9 A;  3AM9 A;  1RM6 B;  1W1M A;  3JS8 A;  3LAE A;  3TSJ A;  1V97 A;  4BCA A;  5AE1 A;  4BC9 A;  3S1D A;  1N5X A;  1MBT A;  1W1O A;  3HRD C;  2PLI A;  3NVZ B;  4PZF A;  2E3T A;  2VFS A;  3NVY B;  1FIQ B;  5AE2 A;  1VDV A;  4PYT A;  1N60 C;  4PWB A;  2R2Z A;  1ZXI C;  2AXR A;  4PVJ A;  2MBR A;  2YVS A;  2VFT A;  5FXD A;  2BVG A;  2BVF A;  2Q4W A;  3FWA A;  3DED A;  1HSK A;  3ETR B;  3DQ0 A;  4DNS A;  1QLT A;  2PLS A;  2P4P A;  1AHV A;  1W1Q A;  4EC3 A;  3LLB A;  1WVF A;  1N61 C; 
#chains in the Genus database with same CATH topology
 5FXF A;  3TX1 A;  4BC7 A;  5HQX A;  2GQU A;  1N63 C;  4XLO A;  1UXY A;  4JB1 A;  1VAO A;  3EUB 3;  4PVE A;  3W8W A;  5I1V A;  3AMZ A;  3I99 A;  1DZN A;  5AWV A;  3NRZ B;  3HSU A;  3S1C A;  1E8G A;  3GSY A;  1SB3 B;  5D79 A;  3RJ8 A;  5HHZ A;  1JRP A;  1AHU A;  3RJA A;  2VFR A;  2W3S A;  1N62 C;  4PVH A;  1T3Q C;  1FFU C;  1E0Y A;  2VFV A;  3SR6 B;  3FW7 A;  2Y3R A;  4HG0 A;  2EXR A;  4JAY A;  3W8Z A;  1W1R A;  5L6G A;  3PM9 A;  1WYG A;  5FXP A;  4ZOH B;  4MLA A;  3W8X A;  5FXE A;  5G5H B;  2QKN A;  1DII A;  2W3R A;  1W1K A;  1MBB A;  4ML8 A;  3S1F A;  2W54 A;  5G5G B;  3POP A;  2UUU A;  3NS1 B;  2P3H A;  3EJE B;  5HMR A;  2I0K A;  2W55 A;  2Q85 A;  5AE3 A;  1AHZ A;  3AN1 A;  1JRO A;  2R8D A;  1FO4 A;  1WVE A;  3BW7 A;  1W1J A;  1F0X A;  1N5W C;  3NVV B;  2VAO A;  4BBY A;  1FFV C;  4UD8 A;  3TSH A;  2QPM A;  2GQT A;  4PWC A;  1E8F A;  4PVK A;  3KJM A;  2RK5 A;  2VFU A;  5ADZ A;  3FW8 A;  3VTE A;  1DIQ A;  1ZR6 A;  2NQW A;  3D2D A;  3NVW B;  1W1L A;  4OAL A;  1QLU A;  1I19 A;  1W1S A;  2BVH A;  3B9J B;  3S1E A;  3D2H A;  2OAI A;  2P13 A;  2IPI A;  1E8H A;  3C0P A;  2O3G A;  2Y4G A;  2UUV A;  4O95 A;  3D2J A;  3FW9 A;  3AM9 A;  1RM6 B;  2Y3S A;  1W1M A;  3JS8 A;  3LAE A;  3TSJ A;  1V97 A;  4BCA A;  5AE1 A;  4BC9 A;  3S1D A;  1N5X A;  1MBT A;  1W1O A;  3HRD C;  2PLI A;  3NVZ B;  4PZF A;  2E3T A;  2VFS A;  3NVY B;  3PQB A;  1FIQ B;  5AE2 A;  1VDV A;  4PYT A;  1N60 C;  4PWB A;  2R2Z A;  1ZXI C;  2AXR A;  4PVJ A;  2MBR A;  2YVS A;  2VFT A;  5FXD A;  2BVG A;  2BVF A;  2Q4W A;  3FWA A;  2Y08 A;  3DED A;  3EJD B;  1HSK A;  3ETR B;  3EJB B;  5K8E A;  3DQ0 A;  5L6F A;  5I1W A;  4DNS A;  1QLT A;  2WDW A;  2PLS A;  2P4P A;  1AHV A;  1W1Q A;  4EC3 A;  3LLB A;  1WVF A;  1N61 C; 
#chains in the Genus database with same CATH homology
 5FXF A;  3TX1 A;  4BC7 A;  5HQX A;  2GQU A;  1N63 C;  4XLO A;  1UXY A;  4JB1 A;  1VAO A;  3EUB 3;  4PVE A;  3W8W A;  5I1V A;  3AMZ A;  3I99 A;  1DZN A;  5AWV A;  3NRZ B;  3HSU A;  3S1C A;  1E8G A;  3GSY A;  1SB3 B;  5D79 A;  3RJ8 A;  5HHZ A;  1JRP A;  1AHU A;  3RJA A;  2VFR A;  2W3S A;  1N62 C;  4PVH A;  1T3Q C;  1FFU C;  1E0Y A;  2VFV A;  3SR6 B;  3FW7 A;  2Y3R A;  4HG0 A;  2EXR A;  4JAY A;  3W8Z A;  1W1R A;  5L6G A;  3PM9 A;  1WYG A;  5FXP A;  4ZOH B;  4MLA A;  3W8X A;  5FXE A;  5G5H B;  2QKN A;  1DII A;  2W3R A;  1W1K A;  1MBB A;  4ML8 A;  3S1F A;  2W54 A;  5G5G B;  3POP A;  2UUU A;  3NS1 B;  2P3H A;  5HMR A;  2I0K A;  2W55 A;  2Q85 A;  5AE3 A;  1AHZ A;  3AN1 A;  1JRO A;  2R8D A;  1FO4 A;  1WVE A;  3BW7 A;  1W1J A;  1F0X A;  1N5W C;  3NVV B;  2VAO A;  4BBY A;  1FFV C;  4UD8 A;  3TSH A;  2QPM A;  2GQT A;  4PWC A;  1E8F A;  4PVK A;  3KJM A;  2RK5 A;  2VFU A;  5ADZ A;  3FW8 A;  3VTE A;  1DIQ A;  1ZR6 A;  2NQW A;  3D2D A;  3NVW B;  1W1L A;  4OAL A;  1QLU A;  1I19 A;  1W1S A;  2BVH A;  3B9J B;  3S1E A;  3D2H A;  2OAI A;  2P13 A;  2IPI A;  1E8H A;  3C0P A;  2O3G A;  2Y4G A;  2UUV A;  4O95 A;  3D2J A;  3FW9 A;  3AM9 A;  1RM6 B;  2Y3S A;  1W1M A;  3JS8 A;  3LAE A;  3TSJ A;  1V97 A;  4BCA A;  5AE1 A;  4BC9 A;  3S1D A;  1N5X A;  1MBT A;  1W1O A;  3HRD C;  2PLI A;  3NVZ B;  4PZF A;  2E3T A;  2VFS A;  3NVY B;  3PQB A;  1FIQ B;  5AE2 A;  1VDV A;  4PYT A;  1N60 C;  4PWB A;  2R2Z A;  1ZXI C;  2AXR A;  4PVJ A;  2MBR A;  2YVS A;  2VFT A;  5FXD A;  2BVG A;  2BVF A;  2Q4W A;  3FWA A;  2Y08 A;  3DED A;  1HSK A;  3ETR B;  5K8E A;  3DQ0 A;  5L6F A;  5I1W A;  4DNS A;  1QLT A;  2WDW A;  2PLS A;  2P4P A;  1AHV A;  1W1Q A;  4EC3 A;  3LLB A;  1WVF A;  1N61 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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