1E8GA

Structure of the h61t double mutant of vanillyl-alcohol oxidase in complex with fluoro-cresol
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Penicillium simplicissimum
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8gA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8gA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8gA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8gA03
3AM9A 1DIQA 3AMZA 4EC3A 2YVSA 2Q85A 1N5XA 1HSKA 2RK5A 4ML8A 3VTEA 5G5HB 1N62C 1WYGA 1W1LA 2W3RA 2R2ZA 2VFSA 4PWCA 1JRPA 2VFRA 2O3GA 3KJMA 1E8FA 3AN1A 1AHVA 1VAOA 1W1KA 5FXEA 2MBRA 1W1OA 1ZXIC 1W1RA 1W1JA 3NVYB 3FW9A 3NS1B 1AHZA 3ETRB 2EXRA 5FXFA 1QLUA 3SR6B 4XLOA 2VFUA 3S1DA 4PWBA 1N5WC 1DIIA 3LLBA 5FXDA 1E8GA 2QKNA 3FWAA 1N60C 3D2HA 1RM6B 1W1SA 3B9JB 1W1QA 1VDVA 2PLIA 4PVJA 1JROA 2I0KA 2QPMA 4JAYA 5HQXA 3HRDC 1AHUA 1MBBA 4BCAA 5FXPA 4O95A 3D2JA 4UD8A 1FFVC 1FFUC 1WVEA 3TSJA 1FIQB 4PZFA 3LAEA 1WVFA 2BVGA 5AE3A 2W3SA 2VAOA 1SB3B 4PVKA 3S1CA 2P13A 1V97A 4DNSA 1F0XA 3NRZB 4PYTA 2GQTA 4ZOHB 4BC7A 3D2DA 2Q4WA 2E3TA 5HHZA 1E0YA 2W55A 2P4PA 2P3HA 2W54A 3C0PA 2VFTA 2BVHA 2R8DA 3EUB3 3DEDA 1W1MA 3NVZB 1UXYA 5ADZA 3TSHA 4BC9A 3NVWB 5HMRA 3FW7A 3DQ0A 3I99A 3W8WA 2PLSA 4OALA 1T3QC 1N61C 3S1FA 3PM9A 1N63C 2NQWA 1FO4A 1MBTA 4PVEA 1QLTA 3JS8A 4PVHA 1ZR6A 2AXRA 3S1EA 4HG0A 5AE1A 3GSYA 3FW8A 2BVFA 3TX1A 1E8HA 5D79A 3W8ZA 5AE2A 5G5GB 4JB1A 2VFVA 2GQUA 4BBYA 1I19A 3BW7A 4MLAA 2OAIA 3NVVB 3W8XA 1DZNA
chains in the Genus database with same CATH superfamily
3AM9A 1DIQA 3AMZA 4EC3A 2YVSA 2Q85A 1N5XA 5L6FA 5L6GA 1HSKA 2RK5A 4ML8A 3VTEA 5G5HB 1N62C 1WYGA 1W1LA 2W3RA 2R2ZA 2VFSA 4PWCA 2Y3RA 1JRPA 2VFRA 2O3GA 3KJMA 1E8FA 3AN1A 1AHVA 1VAOA 1W1KA 5FXEA 2MBRA 1W1OA 1ZXIC 1W1RA 1W1JA 3NVYB 3FW9A 3NS1B 1AHZA 3ETRB 2EXRA 5FXFA 1QLUA 3SR6B 4XLOA 2VFUA 3S1DA 4PWBA 5AWVA 1N5WC 3POPA 1DIIA 3LLBA 5FXDA 1E8GA 2QKNA 3EJDB 5I1WA 3FWAA 1N60C 3D2HA 1RM6B 2UUUA 1W1SA 3B9JB 2IPIA 1W1QA 1VDVA 2PLIA 4PVJA 2Y3SA 1JROA 2I0KA 2QPMA 4JAYA 5HQXA 3HRDC 1AHUA 1MBBA 4BCAA 5FXPA 4O95A 3D2JA 4UD8A 1FFVC 1FFUC 1WVEA 3TSJA 1FIQB 4PZFA 3HSUA 3LAEA 1WVFA 2WDWA 2BVGA 5K8EA 5AE3A 2W3SA 3EJBB 2VAOA 1SB3B 4PVKA 3S1CA 2P13A 1V97A 4DNSA 1F0XA 3NRZB 4PYTA 2GQTA 4ZOHB 4BC7A 3D2DA 2Q4WA 2Y4GA 2E3TA 5HHZA 1E0YA 2W55A 2P4PA 2P3HA 3RJAA 2W54A 3C0PA 2VFTA 2BVHA 2R8DA 3EUB3 3DEDA 1W1MA 3NVZB 1UXYA 5ADZA 3TSHA 4BC9A 3NVWB 5HMRA 3FW7A 3DQ0A 3I99A 3W8WA 2PLSA 5I1VA 4OALA 1T3QC 1N61C 3S1FA 3PM9A 1N63C 2NQWA 1FO4A 2Y08A 1MBTA 4PVEA 3EJEB 1QLTA 3JS8A 4PVHA 1ZR6A 2AXRA 3S1EA 4HG0A 5AE1A 3GSYA 3FW8A 2BVFA 3TX1A 1E8HA 3PQBA 5D79A 2UUVA 3RJ8A 3W8ZA 5AE2A 5G5GB 4JB1A 2VFVA 2GQUA 4BBYA 1I19A 3BW7A 4MLAA 2OAIA 3NVVB 3W8XA 1DZNA
chains in the Genus database with same CATH topology
3AM9A 1DIQA 3AMZA 4EC3A 2YVSA 2Q85A 1N5XA 5L6FA 5L6GA 1HSKA 2RK5A 4ML8A 3VTEA 5G5HB 1N62C 1WYGA 1W1LA 2W3RA 2R2ZA 2VFSA 4PWCA 2Y3RA 1JRPA 2VFRA 2O3GA 3KJMA 1E8FA 3AN1A 1AHVA 1VAOA 1W1KA 5FXEA 2MBRA 1W1OA 1ZXIC 1W1RA 1W1JA 3NVYB 3FW9A 3NS1B 1AHZA 3ETRB 2EXRA 5FXFA 1QLUA 3SR6B 4XLOA 2VFUA 3S1DA 4PWBA 5AWVA 1N5WC 3POPA 1DIIA 3LLBA 5FXDA 1E8GA 2QKNA 5I1WA 3FWAA 1N60C 3D2HA 1RM6B 2UUUA 1W1SA 3B9JB 2IPIA 1W1QA 1VDVA 2PLIA 4PVJA 2Y3SA 1JROA 2I0KA 2QPMA 4JAYA 5HQXA 3HRDC 1AHUA 1MBBA 4BCAA 5FXPA 4O95A 3D2JA 4UD8A 1FFVC 1FFUC 1WVEA 3TSJA 1FIQB 4PZFA 3HSUA 3LAEA 1WVFA 2WDWA 2BVGA 5K8EA 5AE3A 2W3SA 2VAOA 1SB3B 4PVKA 3S1CA 2P13A 1V97A 4DNSA 1F0XA 3NRZB 4PYTA 2GQTA 4ZOHB 4BC7A 3D2DA 2Q4WA 2Y4GA 2E3TA 5HHZA 1E0YA 2W55A 2P4PA 2P3HA 3RJAA 2W54A 3C0PA 2VFTA 2BVHA 2R8DA 3EUB3 3DEDA 1W1MA 3NVZB 1UXYA 5ADZA 3TSHA 4BC9A 3NVWB 5HMRA 3FW7A 3DQ0A 3I99A 3W8WA 2PLSA 5I1VA 4OALA 1T3QC 1N61C 3S1FA 3PM9A 1N63C 2NQWA 1FO4A 2Y08A 1MBTA 4PVEA 1QLTA 3JS8A 4PVHA 1ZR6A 2AXRA 3S1EA 4HG0A 5AE1A 3GSYA 3FW8A 2BVFA 3TX1A 1E8HA 3PQBA 5D79A 2UUVA 3RJ8A 3W8ZA 5AE2A 5G5GB 4JB1A 2VFVA 2GQUA 4BBYA 1I19A 3BW7A 4MLAA 2OAIA 3NVVB 3W8XA 1DZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AM9 A;  1DIQ A;  3AMZ A;  4EC3 A;  2YVS A;  2Q85 A;  1N5X A;  1HSK A;  2RK5 A;  4ML8 A;  3VTE A;  5G5H B;  1N62 C;  1WYG A;  1W1L A;  2W3R A;  2R2Z A;  2VFS A;  4PWC A;  1JRP A;  2VFR A;  2O3G A;  3KJM A;  1E8F A;  3AN1 A;  1AHV A;  1VAO A;  1W1K A;  5FXE A;  2MBR A;  1W1O A;  1ZXI C;  1W1R A;  1W1J A;  3NVY B;  3FW9 A;  3NS1 B;  1AHZ A;  3ETR B;  2EXR A;  5FXF A;  1QLU A;  3SR6 B;  4XLO A;  2VFU A;  3S1D A;  4PWB A;  1N5W C;  1DII A;  3LLB A;  5FXD A;  1E8G A;  2QKN A;  3FWA A;  1N60 C;  3D2H A;  1RM6 B;  1W1S A;  3B9J B;  1W1Q A;  1VDV A;  2PLI A;  4PVJ A;  1JRO A;  2I0K A;  2QPM A;  4JAY A;  5HQX A;  3HRD C;  1AHU A;  1MBB A;  4BCA A;  5FXP A;  4O95 A;  3D2J A;  4UD8 A;  1FFV C;  1FFU C;  1WVE A;  3TSJ A;  1FIQ B;  4PZF A;  3LAE A;  1WVF A;  2BVG A;  5AE3 A;  2W3S A;  2VAO A;  1SB3 B;  4PVK A;  3S1C A;  2P13 A;  1V97 A;  4DNS A;  1F0X A;  3NRZ B;  4PYT A;  2GQT A;  4ZOH B;  4BC7 A;  3D2D A;  2Q4W A;  2E3T A;  5HHZ A;  1E0Y A;  2W55 A;  2P4P A;  2P3H A;  2W54 A;  3C0P A;  2VFT A;  2BVH A;  2R8D A;  3EUB 3;  3DED A;  1W1M A;  3NVZ B;  1UXY A;  5ADZ A;  3TSH A;  4BC9 A;  3NVW B;  5HMR A;  3FW7 A;  3DQ0 A;  3I99 A;  3W8W A;  2PLS A;  4OAL A;  1T3Q C;  1N61 C;  3S1F A;  3PM9 A;  1N63 C;  2NQW A;  1FO4 A;  1MBT A;  4PVE A;  1QLT A;  3JS8 A;  4PVH A;  1ZR6 A;  2AXR A;  3S1E A;  4HG0 A;  5AE1 A;  3GSY A;  3FW8 A;  2BVF A;  3TX1 A;  1E8H A;  5D79 A;  3W8Z A;  5AE2 A;  5G5G B;  4JB1 A;  2VFV A;  2GQU A;  4BBY A;  1I19 A;  3BW7 A;  4MLA A;  2OAI A;  3NVV B;  3W8X A;  1DZN A; 
#chains in the Genus database with same CATH topology
 3AM9 A;  1DIQ A;  3AMZ A;  4EC3 A;  2YVS A;  2Q85 A;  1N5X A;  5L6F A;  5L6G A;  1HSK A;  2RK5 A;  4ML8 A;  3VTE A;  5G5H B;  1N62 C;  1WYG A;  1W1L A;  2W3R A;  2R2Z A;  2VFS A;  4PWC A;  2Y3R A;  1JRP A;  2VFR A;  2O3G A;  3KJM A;  1E8F A;  3AN1 A;  1AHV A;  1VAO A;  1W1K A;  5FXE A;  2MBR A;  1W1O A;  1ZXI C;  1W1R A;  1W1J A;  3NVY B;  3FW9 A;  3NS1 B;  1AHZ A;  3ETR B;  2EXR A;  5FXF A;  1QLU A;  3SR6 B;  4XLO A;  2VFU A;  3S1D A;  4PWB A;  5AWV A;  1N5W C;  3POP A;  1DII A;  3LLB A;  5FXD A;  1E8G A;  2QKN A;  3EJD B;  5I1W A;  3FWA A;  1N60 C;  3D2H A;  1RM6 B;  2UUU A;  1W1S A;  3B9J B;  2IPI A;  1W1Q A;  1VDV A;  2PLI A;  4PVJ A;  2Y3S A;  1JRO A;  2I0K A;  2QPM A;  4JAY A;  5HQX A;  3HRD C;  1AHU A;  1MBB A;  4BCA A;  5FXP A;  4O95 A;  3D2J A;  4UD8 A;  1FFV C;  1FFU C;  1WVE A;  3TSJ A;  1FIQ B;  4PZF A;  3HSU A;  3LAE A;  1WVF A;  2WDW A;  2BVG A;  5K8E A;  5AE3 A;  2W3S A;  3EJB B;  2VAO A;  1SB3 B;  4PVK A;  3S1C A;  2P13 A;  1V97 A;  4DNS A;  1F0X A;  3NRZ B;  4PYT A;  2GQT A;  4ZOH B;  4BC7 A;  3D2D A;  2Q4W A;  2Y4G A;  2E3T A;  5HHZ A;  1E0Y A;  2W55 A;  2P4P A;  2P3H A;  3RJA A;  2W54 A;  3C0P A;  2VFT A;  2BVH A;  2R8D A;  3EUB 3;  3DED A;  1W1M A;  3NVZ B;  1UXY A;  5ADZ A;  3TSH A;  4BC9 A;  3NVW B;  5HMR A;  3FW7 A;  3DQ0 A;  3I99 A;  3W8W A;  2PLS A;  5I1V A;  4OAL A;  1T3Q C;  1N61 C;  3S1F A;  3PM9 A;  1N63 C;  2NQW A;  1FO4 A;  2Y08 A;  1MBT A;  4PVE A;  3EJE B;  1QLT A;  3JS8 A;  4PVH A;  1ZR6 A;  2AXR A;  3S1E A;  4HG0 A;  5AE1 A;  3GSY A;  3FW8 A;  2BVF A;  3TX1 A;  1E8H A;  3PQB A;  5D79 A;  2UUV A;  3RJ8 A;  3W8Z A;  5AE2 A;  5G5G B;  4JB1 A;  2VFV A;  2GQU A;  4BBY A;  1I19 A;  3BW7 A;  4MLA A;  2OAI A;  3NVV B;  3W8X A;  1DZN A; 
#chains in the Genus database with same CATH homology
 3AM9 A;  1DIQ A;  3AMZ A;  4EC3 A;  2YVS A;  2Q85 A;  1N5X A;  5L6F A;  5L6G A;  1HSK A;  2RK5 A;  4ML8 A;  3VTE A;  5G5H B;  1N62 C;  1WYG A;  1W1L A;  2W3R A;  2R2Z A;  2VFS A;  4PWC A;  2Y3R A;  1JRP A;  2VFR A;  2O3G A;  3KJM A;  1E8F A;  3AN1 A;  1AHV A;  1VAO A;  1W1K A;  5FXE A;  2MBR A;  1W1O A;  1ZXI C;  1W1R A;  1W1J A;  3NVY B;  3FW9 A;  3NS1 B;  1AHZ A;  3ETR B;  2EXR A;  5FXF A;  1QLU A;  3SR6 B;  4XLO A;  2VFU A;  3S1D A;  4PWB A;  5AWV A;  1N5W C;  3POP A;  1DII A;  3LLB A;  5FXD A;  1E8G A;  2QKN A;  5I1W A;  3FWA A;  1N60 C;  3D2H A;  1RM6 B;  2UUU A;  1W1S A;  3B9J B;  2IPI A;  1W1Q A;  1VDV A;  2PLI A;  4PVJ A;  2Y3S A;  1JRO A;  2I0K A;  2QPM A;  4JAY A;  5HQX A;  3HRD C;  1AHU A;  1MBB A;  4BCA A;  5FXP A;  4O95 A;  3D2J A;  4UD8 A;  1FFV C;  1FFU C;  1WVE A;  3TSJ A;  1FIQ B;  4PZF A;  3HSU A;  3LAE A;  1WVF A;  2WDW A;  2BVG A;  5K8E A;  5AE3 A;  2W3S A;  2VAO A;  1SB3 B;  4PVK A;  3S1C A;  2P13 A;  1V97 A;  4DNS A;  1F0X A;  3NRZ B;  4PYT A;  2GQT A;  4ZOH B;  4BC7 A;  3D2D A;  2Q4W A;  2Y4G A;  2E3T A;  5HHZ A;  1E0Y A;  2W55 A;  2P4P A;  2P3H A;  3RJA A;  2W54 A;  3C0P A;  2VFT A;  2BVH A;  2R8D A;  3EUB 3;  3DED A;  1W1M A;  3NVZ B;  1UXY A;  5ADZ A;  3TSH A;  4BC9 A;  3NVW B;  5HMR A;  3FW7 A;  3DQ0 A;  3I99 A;  3W8W A;  2PLS A;  5I1V A;  4OAL A;  1T3Q C;  1N61 C;  3S1F A;  3PM9 A;  1N63 C;  2NQW A;  1FO4 A;  2Y08 A;  1MBT A;  4PVE A;  1QLT A;  3JS8 A;  4PVH A;  1ZR6 A;  2AXR A;  3S1E A;  4HG0 A;  5AE1 A;  3GSY A;  3FW8 A;  2BVF A;  3TX1 A;  1E8H A;  3PQB A;  5D79 A;  2UUV A;  3RJ8 A;  3W8Z A;  5AE2 A;  5G5G B;  4JB1 A;  2VFV A;  2GQU A;  4BBY A;  1I19 A;  3BW7 A;  4MLA A;  2OAI A;  3NVV B;  3W8X A;  1DZN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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