1E8GA

Structure of the h61t double mutant of vanillyl-alcohol oxidase in complex with fluoro-cresol
Total Genus 180
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Analysis of Flavinylation in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Penicillium simplicissimum
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2000-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1e8gA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1e8gA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1e8gA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1e8gA03
4BCAA 1W1QA 1N61C 4PWCA 1WVFA 4PVEA 5AE1A 4JB1A 5ADZA 3W8WA 1FO4A 3NVVB 4HG0A 4ML8A 2OAIA 5FXEA 2RK5A 1QLUA 2P3HA 3FWAA 1QLTA 1MBTA 3ETRB 3S1FA 4XLOA 2R8DA 2W3RA 1RM6B 1N5WC 1I19A 1E8FA 3D2JA 3FW8A 4BBYA 2GQUA 3JS8A 1N62C 5HHZA 1W1KA 2MBRA 1E8HA 5D79A 5HMRA 3NVYB 1UXYA 3TSHA 4UD8A 2W3SA 3I99A 1JROA 2VFTA 1W1LA 2QKNA 3B9JB 3AM9A 3FW7A 4EC3A 1WVEA 1AHUA 2YVSA 1HSKA 1FFUC 3S1CA 3TSJA 1WYGA 1VDVA 2AXRA 1FIQB 5FXPA 3FW9A 3S1EA 2W54A 4O95A 3KJMA 3C0PA 2VFUA 5G5GB 1MBBA 1ZR6A 2Q4WA 3BW7A 1JRPA 1F0XA 1N63C 2W55A 2R2ZA 4BC7A 4ZOHB 1E8GA 1AHZA 1ZXIC 1VAOA 2P4PA 3LLBA 2I0KA 3PM9A 3NS1B 2VFVA 2QPMA 3DEDA 2VFRA 4BC9A 2P13A 3SR6B 3TX1A 2VFSA 1DIIA 3NRZB 4JAYA 2PLIA 1FFVC 3LAEA 2BVFA 1W1JA 3VTEA 2Q85A 5AE3A 1E0YA 4OALA 4PZFA 4PVHA 2BVGA 4PWBA 5HQXA 1DIQA 3W8ZA 3EUB3 3HRDC 5FXDA 4PVJA 1W1OA 2O3GA 5AE2A 3W8XA 3S1DA 3NVWB 2EXRA 4PYTA 2E3TA 1W1MA 4DNSA 3NVZB 1SB3B 5G5HB 1N60C 3AN1A 4MLAA 3D2HA 2NQWA 3DQ0A 1W1SA 1AHVA 1V97A 1DZNA 1T3QC 2BVHA 3AMZA 5FXFA 4PVKA 1N5XA 3GSYA 2PLSA 2VAOA 3D2DA 2GQTA 1W1RA
chains in the Genus database with same CATH superfamily
4BCAA 1W1QA 1N61C 4PWCA 1WVFA 4PVEA 5AE1A 4JB1A 5ADZA 3NVVB 3W8WA 1FO4A 4HG0A 4ML8A 2OAIA 5FXEA 2RK5A 1QLUA 2P3HA 3FWAA 1QLTA 1MBTA 3ETRB 3S1FA 4XLOA 2R8DA 5L6GA 2W3RA 1RM6B 1N5WC 1I19A 5I1WA 3EJBB 1E8FA 3D2JA 2WDWA 3FW8A 4BBYA 2GQUA 3JS8A 1N62C 3RJ8A 5HHZA 1W1KA 2MBRA 1E8HA 5D79A 3NVYB 5HMRA 1UXYA 3TSHA 4UD8A 2W3SA 3I99A 1JROA 2VFTA 1W1LA 2QKNA 3B9JB 3AM9A 3FW7A 5I1VA 4EC3A 1WVEA 1AHUA 2YVSA 3HSUA 1HSKA 1FFUC 3S1CA 3TSJA 1WYGA 1VDVA 2AXRA 3PQBA 1FIQB 5FXPA 3FW9A 3S1EA 2W54A 4O95A 3KJMA 3C0PA 2VFUA 5G5GB 1MBBA 1ZR6A 2Q4WA 3BW7A 1JRPA 1F0XA 1N63C 2W55A 2R2ZA 4BC7A 4ZOHB 1E8GA 1AHZA 1ZXIC 1VAOA 2P4PA 3LLBA 3EJEB 2I0KA 3PM9A 3NS1B 2VFVA 2QPMA 2UUVA 2VFRA 4BC9A 2P13A 3DEDA 3SR6B 3TX1A 2VFSA 1DIIA 3NRZB 4JAYA 2PLIA 1FFVC 3LAEA 2BVFA 1W1JA 3VTEA 2Q85A 5AE3A 2Y3SA 3EJDB 1E0YA 4OALA 4PZFA 4PVHA 2Y3RA 2BVGA 4PWBA 3RJAA 5HQXA 1DIQA 3W8ZA 3EUB3 3HRDC 5FXDA 4PVJA 2Y4GA 3POPA 1W1OA 5L6FA 2O3GA 5AE2A 2UUUA 3W8XA 3S1DA 3NVWB 2EXRA 4PYTA 2E3TA 1W1MA 4DNSA 3NVZB 1SB3B 5G5HB 1N60C 3AN1A 4MLAA 3D2HA 2NQWA 3DQ0A 1W1SA 1AHVA 5AWVA 5K8EA 1V97A 1DZNA 1T3QC 2BVHA 3AMZA 5FXFA 4PVKA 2Y08A 1N5XA 2IPIA 3GSYA 2PLSA 2VAOA 3D2DA 2GQTA 1W1RA
chains in the Genus database with same CATH topology
4BCAA 1W1QA 1N61C 4PWCA 1WVFA 4PVEA 5AE1A 4JB1A 5ADZA 3W8WA 1FO4A 3NVVB 4HG0A 4ML8A 2OAIA 5FXEA 2RK5A 1QLUA 2P3HA 3FWAA 1QLTA 1MBTA 3ETRB 3S1FA 4XLOA 2R8DA 5L6GA 2W3RA 1RM6B 1N5WC 1I19A 5I1WA 1E8FA 3D2JA 2WDWA 3FW8A 4BBYA 2GQUA 3JS8A 1N62C 3RJ8A 5HHZA 1W1KA 2MBRA 1E8HA 5D79A 5HMRA 3NVYB 1UXYA 3TSHA 4UD8A 2W3SA 3I99A 1JROA 2VFTA 1W1LA 2QKNA 3B9JB 3AM9A 3FW7A 5I1VA 4EC3A 1WVEA 1AHUA 2YVSA 3HSUA 1HSKA 1FFUC 3S1CA 3TSJA 1WYGA 1VDVA 2AXRA 3PQBA 1FIQB 5FXPA 3FW9A 3S1EA 2W54A 4O95A 3KJMA 3C0PA 2VFUA 5G5GB 1MBBA 1ZR6A 2Q4WA 3BW7A 1JRPA 1F0XA 1N63C 2W55A 2R2ZA 4BC7A 4ZOHB 1E8GA 1AHZA 1ZXIC 1VAOA 2P4PA 3LLBA 2I0KA 3PM9A 3NS1B 2VFVA 2QPMA 2UUVA 2VFRA 4BC9A 2P13A 3DEDA 3SR6B 3TX1A 2VFSA 1DIIA 3NRZB 4JAYA 2PLIA 1FFVC 3LAEA 2BVFA 1W1JA 3VTEA 2Q85A 5AE3A 2Y3SA 1E0YA 4OALA 4PZFA 4PVHA 2Y3RA 2BVGA 4PWBA 3RJAA 5HQXA 1DIQA 3W8ZA 3EUB3 3HRDC 5FXDA 4PVJA 2Y4GA 3POPA 1W1OA 5L6FA 2O3GA 5AE2A 2UUUA 3W8XA 3S1DA 3NVWB 2EXRA 4PYTA 2E3TA 1W1MA 4DNSA 3NVZB 1SB3B 5G5HB 1N60C 3AN1A 4MLAA 3D2HA 2NQWA 3DQ0A 1W1SA 1AHVA 5AWVA 5K8EA 1V97A 1DZNA 1T3QC 2BVHA 3AMZA 5FXFA 4PVKA 2Y08A 1N5XA 2IPIA 3GSYA 2PLSA 2VAOA 3D2DA 2GQTA 1W1RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BCA A;  1W1Q A;  1N61 C;  4PWC A;  1WVF A;  4PVE A;  5AE1 A;  4JB1 A;  5ADZ A;  3W8W A;  1FO4 A;  3NVV B;  4HG0 A;  4ML8 A;  2OAI A;  5FXE A;  2RK5 A;  1QLU A;  2P3H A;  3FWA A;  1QLT A;  1MBT A;  3ETR B;  3S1F A;  4XLO A;  2R8D A;  2W3R A;  1RM6 B;  1N5W C;  1I19 A;  1E8F A;  3D2J A;  3FW8 A;  4BBY A;  2GQU A;  3JS8 A;  1N62 C;  5HHZ A;  1W1K A;  2MBR A;  1E8H A;  5D79 A;  5HMR A;  3NVY B;  1UXY A;  3TSH A;  4UD8 A;  2W3S A;  3I99 A;  1JRO A;  2VFT A;  1W1L A;  2QKN A;  3B9J B;  3AM9 A;  3FW7 A;  4EC3 A;  1WVE A;  1AHU A;  2YVS A;  1HSK A;  1FFU C;  3S1C A;  3TSJ A;  1WYG A;  1VDV A;  2AXR A;  1FIQ B;  5FXP A;  3FW9 A;  3S1E A;  2W54 A;  4O95 A;  3KJM A;  3C0P A;  2VFU A;  5G5G B;  1MBB A;  1ZR6 A;  2Q4W A;  3BW7 A;  1JRP A;  1F0X A;  1N63 C;  2W55 A;  2R2Z A;  4BC7 A;  4ZOH B;  1E8G A;  1AHZ A;  1ZXI C;  1VAO A;  2P4P A;  3LLB A;  2I0K A;  3PM9 A;  3NS1 B;  2VFV A;  2QPM A;  3DED A;  2VFR A;  4BC9 A;  2P13 A;  3SR6 B;  3TX1 A;  2VFS A;  1DII A;  3NRZ B;  4JAY A;  2PLI A;  1FFV C;  3LAE A;  2BVF A;  1W1J A;  3VTE A;  2Q85 A;  5AE3 A;  1E0Y A;  4OAL A;  4PZF A;  4PVH A;  2BVG A;  4PWB A;  5HQX A;  1DIQ A;  3W8Z A;  3EUB 3;  3HRD C;  5FXD A;  4PVJ A;  1W1O A;  2O3G A;  5AE2 A;  3W8X A;  3S1D A;  3NVW B;  2EXR A;  4PYT A;  2E3T A;  1W1M A;  4DNS A;  3NVZ B;  1SB3 B;  5G5H B;  1N60 C;  3AN1 A;  4MLA A;  3D2H A;  2NQW A;  3DQ0 A;  1W1S A;  1AHV A;  1V97 A;  1DZN A;  1T3Q C;  2BVH A;  3AMZ A;  5FXF A;  4PVK A;  1N5X A;  3GSY A;  2PLS A;  2VAO A;  3D2D A;  2GQT A;  1W1R A; 
#chains in the Genus database with same CATH topology
 4BCA A;  1W1Q A;  1N61 C;  4PWC A;  1WVF A;  4PVE A;  5AE1 A;  4JB1 A;  5ADZ A;  3NVV B;  3W8W A;  1FO4 A;  4HG0 A;  4ML8 A;  2OAI A;  5FXE A;  2RK5 A;  1QLU A;  2P3H A;  3FWA A;  1QLT A;  1MBT A;  3ETR B;  3S1F A;  4XLO A;  2R8D A;  5L6G A;  2W3R A;  1RM6 B;  1N5W C;  1I19 A;  5I1W A;  3EJB B;  1E8F A;  3D2J A;  2WDW A;  3FW8 A;  4BBY A;  2GQU A;  3JS8 A;  1N62 C;  3RJ8 A;  5HHZ A;  1W1K A;  2MBR A;  1E8H A;  5D79 A;  3NVY B;  5HMR A;  1UXY A;  3TSH A;  4UD8 A;  2W3S A;  3I99 A;  1JRO A;  2VFT A;  1W1L A;  2QKN A;  3B9J B;  3AM9 A;  3FW7 A;  5I1V A;  4EC3 A;  1WVE A;  1AHU A;  2YVS A;  3HSU A;  1HSK A;  1FFU C;  3S1C A;  3TSJ A;  1WYG A;  1VDV A;  2AXR A;  3PQB A;  1FIQ B;  5FXP A;  3FW9 A;  3S1E A;  2W54 A;  4O95 A;  3KJM A;  3C0P A;  2VFU A;  5G5G B;  1MBB A;  1ZR6 A;  2Q4W A;  3BW7 A;  1JRP A;  1F0X A;  1N63 C;  2W55 A;  2R2Z A;  4BC7 A;  4ZOH B;  1E8G A;  1AHZ A;  1ZXI C;  1VAO A;  2P4P A;  3LLB A;  3EJE B;  2I0K A;  3PM9 A;  3NS1 B;  2VFV A;  2QPM A;  2UUV A;  2VFR A;  4BC9 A;  2P13 A;  3DED A;  3SR6 B;  3TX1 A;  2VFS A;  1DII A;  3NRZ B;  4JAY A;  2PLI A;  1FFV C;  3LAE A;  2BVF A;  1W1J A;  3VTE A;  2Q85 A;  5AE3 A;  2Y3S A;  3EJD B;  1E0Y A;  4OAL A;  4PZF A;  4PVH A;  2Y3R A;  2BVG A;  4PWB A;  3RJA A;  5HQX A;  1DIQ A;  3W8Z A;  3EUB 3;  3HRD C;  5FXD A;  4PVJ A;  2Y4G A;  3POP A;  1W1O A;  5L6F A;  2O3G A;  5AE2 A;  2UUU A;  3W8X A;  3S1D A;  3NVW B;  2EXR A;  4PYT A;  2E3T A;  1W1M A;  4DNS A;  3NVZ B;  1SB3 B;  5G5H B;  1N60 C;  3AN1 A;  4MLA A;  3D2H A;  2NQW A;  3DQ0 A;  1W1S A;  1AHV A;  5AWV A;  5K8E A;  1V97 A;  1DZN A;  1T3Q C;  2BVH A;  3AMZ A;  5FXF A;  4PVK A;  2Y08 A;  1N5X A;  2IPI A;  3GSY A;  2PLS A;  2VAO A;  3D2D A;  2GQT A;  1W1R A; 
#chains in the Genus database with same CATH homology
 4BCA A;  1W1Q A;  1N61 C;  4PWC A;  1WVF A;  4PVE A;  5AE1 A;  4JB1 A;  5ADZ A;  3W8W A;  1FO4 A;  3NVV B;  4HG0 A;  4ML8 A;  2OAI A;  5FXE A;  2RK5 A;  1QLU A;  2P3H A;  3FWA A;  1QLT A;  1MBT A;  3ETR B;  3S1F A;  4XLO A;  2R8D A;  5L6G A;  2W3R A;  1RM6 B;  1N5W C;  1I19 A;  5I1W A;  1E8F A;  3D2J A;  2WDW A;  3FW8 A;  4BBY A;  2GQU A;  3JS8 A;  1N62 C;  3RJ8 A;  5HHZ A;  1W1K A;  2MBR A;  1E8H A;  5D79 A;  5HMR A;  3NVY B;  1UXY A;  3TSH A;  4UD8 A;  2W3S A;  3I99 A;  1JRO A;  2VFT A;  1W1L A;  2QKN A;  3B9J B;  3AM9 A;  3FW7 A;  5I1V A;  4EC3 A;  1WVE A;  1AHU A;  2YVS A;  3HSU A;  1HSK A;  1FFU C;  3S1C A;  3TSJ A;  1WYG A;  1VDV A;  2AXR A;  3PQB A;  1FIQ B;  5FXP A;  3FW9 A;  3S1E A;  2W54 A;  4O95 A;  3KJM A;  3C0P A;  2VFU A;  5G5G B;  1MBB A;  1ZR6 A;  2Q4W A;  3BW7 A;  1JRP A;  1F0X A;  1N63 C;  2W55 A;  2R2Z A;  4BC7 A;  4ZOH B;  1E8G A;  1AHZ A;  1ZXI C;  1VAO A;  2P4P A;  3LLB A;  2I0K A;  3PM9 A;  3NS1 B;  2VFV A;  2QPM A;  2UUV A;  2VFR A;  4BC9 A;  2P13 A;  3DED A;  3SR6 B;  3TX1 A;  2VFS A;  1DII A;  3NRZ B;  4JAY A;  2PLI A;  1FFV C;  3LAE A;  2BVF A;  1W1J A;  3VTE A;  2Q85 A;  5AE3 A;  2Y3S A;  1E0Y A;  4OAL A;  4PZF A;  4PVH A;  2Y3R A;  2BVG A;  4PWB A;  3RJA A;  5HQX A;  1DIQ A;  3W8Z A;  3EUB 3;  3HRD C;  5FXD A;  4PVJ A;  2Y4G A;  3POP A;  1W1O A;  5L6F A;  2O3G A;  5AE2 A;  2UUU A;  3W8X A;  3S1D A;  3NVW B;  2EXR A;  4PYT A;  2E3T A;  1W1M A;  4DNS A;  3NVZ B;  1SB3 B;  5G5H B;  1N60 C;  3AN1 A;  4MLA A;  3D2H A;  2NQW A;  3DQ0 A;  1W1S A;  1AHV A;  5AWV A;  5K8E A;  1V97 A;  1DZN A;  1T3Q C;  2BVH A;  3AMZ A;  5FXF A;  4PVK A;  2Y08 A;  1N5X A;  2IPI A;  3GSY A;  2PLS A;  2VAO A;  3D2D A;  2GQT A;  1W1R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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