1QLTA

Structure of the h422a mutant of the flavoenzyme vanillyl-alcohol oxidase
Total Genus 180

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
180
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Flavoenzyme
source organism Penicillium simplicissimum
publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase.
pubmed doi rcsb
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 180
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qltA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qltA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qltA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qltA03
3DQ0A 1AHZA 1QLUA 2VFTA 2QPMA 3S1CA 2Q85A 3C0PA 3FW9A 5FXDA 4PWCA 4UD8A 5HQXA 2OAIA 3D2HA 1F0XA 3VTEA 2NQWA 2VFSA 4BCAA 4PZFA 2O3GA 3D2JA 4PWBA 2VFVA 4DNSA 4ZOHB 1W1OA 2VAOA 3BW7A 2Q4WA 1N61C 3PM9A 1E8HA 3FW8A 1AHVA 4JB1A 1QLTA 1VDVA 2W54A 1UXYA 1DIIA 1SB3B 2W3SA 3SR6B 2I0KA 2EXRA 1W1LA 1W1RA 4BC9A 5AE3A 2MBRA 1FO4A 3TSJA 4BC7A 5AE2A 4XLOA 3EUB3 4ML8A 4PVJA 2BVGA 1WVFA 5AE1A 5FXPA 1HSKA 1E8GA 3GSYA 2PLSA 1VAOA 1RM6B 3LAEA 3ETRB 1T3QC 5G5HB 1W1MA 1FFUC 3NS1B 1MBTA 2RK5A 4O95A 1FFVC 3D2DA 2R8DA 1W1JA 1N5WC 3W8XA 1I19A 5FXEA 5FXFA 1N5XA 4PVKA 3W8WA 3S1FA 5HMRA 1JROA 2AXRA 1DZNA 3NVWB 1ZR6A 2BVHA 5D79A 3AN1A 3FWAA 4PVHA 3NVVB 3LLBA 3DEDA 2P3HA 4PYTA 3NVZB 2YVSA 2W3RA 2BVFA 3TSHA 1MBBA 5ADZA 2VFRA 1V97A 2E3TA 2GQTA 3W8ZA 1WYGA 4OALA 1W1SA 2P13A 4JAYA 3NVYB 1N60C 2VFUA 3FW7A 3NRZB 1W1QA 4HG0A 2QKNA 4PVEA 1N62C 1WVEA 1ZXIC 3I99A 3JS8A 5G5GB 1W1KA 3KJMA 2R2ZA 3B9JB 1DIQA 4MLAA 1E8FA 1E0YA 1AHUA 2P4PA 3S1EA 4EC3A 3S1DA 1FIQB 3AM9A 5HHZA 1JRPA 1N63C 2GQUA 3AMZA 4BBYA 2PLIA 3HRDC 3TX1A 2W55A
chains in the Genus database with same CATH superfamily
3DQ0A 1AHZA 2Y4GA 1QLUA 2VFTA 2QPMA 3S1CA 2Q85A 3C0PA 3FW9A 5FXDA 4PWCA 4UD8A 5HQXA 2OAIA 3D2HA 1F0XA 2Y3RA 3VTEA 2NQWA 2VFSA 4BCAA 3EJDB 3PQBA 4PZFA 2O3GA 3D2JA 4PWBA 2VFVA 4DNSA 4ZOHB 1W1OA 2VAOA 3BW7A 2Q4WA 1N61C 3PM9A 1E8HA 3EJBB 3FW8A 1AHVA 4JB1A 1QLTA 1VDVA 2W54A 1UXYA 1DIIA 1SB3B 2W3SA 3SR6B 2I0KA 2Y3SA 5I1VA 2EXRA 1W1LA 1W1RA 4BC9A 5AE3A 2MBRA 1FO4A 2UUVA 3TSJA 4BC7A 5AE2A 4XLOA 3EUB3 4ML8A 4PVJA 2BVGA 1WVFA 5AE1A 5FXPA 1HSKA 5L6FA 1E8GA 3GSYA 2PLSA 1VAOA 1RM6B 3LAEA 2IPIA 3ETRB 1T3QC 5G5HB 1W1MA 1FFUC 3NS1B 1MBTA 2RK5A 4O95A 1FFVC 3D2DA 2R8DA 2WDWA 1W1JA 1N5WC 3W8XA 1I19A 5FXEA 5FXFA 1N5XA 4PVKA 3W8WA 5K8EA 3S1FA 5HMRA 1JROA 2AXRA 1DZNA 3NVWB 1ZR6A 2BVHA 5D79A 3AN1A 2UUUA 3FWAA 4PVHA 3NVVB 3LLBA 3DEDA 2P3HA 4PYTA 3NVZB 2YVSA 2W3RA 2BVFA 3TSHA 1MBBA 5ADZA 2VFRA 1V97A 2E3TA 2GQTA 3W8ZA 5I1WA 1WYGA 4OALA 3POPA 1W1SA 2P13A 4JAYA 2Y08A 3NVYB 5AWVA 1N60C 2VFUA 3FW7A 3NRZB 3RJAA 3EJEB 3HSUA 1W1QA 4HG0A 2QKNA 4PVEA 1N62C 1WVEA 1ZXIC 3I99A 3JS8A 5G5GB 1W1KA 3KJMA 2R2ZA 3B9JB 3RJ8A 1DIQA 4MLAA 1E8FA 1E0YA 1AHUA 2P4PA 3S1EA 4EC3A 3S1DA 5L6GA 1FIQB 3AM9A 5HHZA 1JRPA 1N63C 2GQUA 3AMZA 4BBYA 2PLIA 3HRDC 3TX1A 2W55A
chains in the Genus database with same CATH topology
3DQ0A 1AHZA 2Y4GA 1QLUA 2VFTA 2QPMA 3S1CA 2Q85A 3C0PA 3FW9A 5FXDA 4PWCA 4UD8A 5HQXA 2OAIA 3D2HA 1F0XA 2Y3RA 3VTEA 2NQWA 2VFSA 4BCAA 3PQBA 4PZFA 2O3GA 3D2JA 4PWBA 2VFVA 4DNSA 4ZOHB 1W1OA 2VAOA 3BW7A 2Q4WA 1N61C 3PM9A 1E8HA 3FW8A 1AHVA 4JB1A 1QLTA 1VDVA 2W54A 1UXYA 1DIIA 1SB3B 2W3SA 3SR6B 2I0KA 2Y3SA 5I1VA 2EXRA 1W1LA 1W1RA 4BC9A 5AE3A 2MBRA 1FO4A 2UUVA 3TSJA 4BC7A 5AE2A 4XLOA 3EUB3 4ML8A 4PVJA 2BVGA 1WVFA 5AE1A 5FXPA 1HSKA 5L6FA 1E8GA 3GSYA 2PLSA 1VAOA 1RM6B 3LAEA 2IPIA 3ETRB 1T3QC 5G5HB 1W1MA 1FFUC 3NS1B 1MBTA 2RK5A 4O95A 1FFVC 3D2DA 2R8DA 2WDWA 1W1JA 1N5WC 3W8XA 1I19A 5FXEA 5FXFA 1N5XA 4PVKA 3W8WA 5K8EA 3S1FA 5HMRA 1JROA 2AXRA 1DZNA 3NVWB 1ZR6A 2BVHA 5D79A 3AN1A 2UUUA 3FWAA 4PVHA 3NVVB 3LLBA 3DEDA 2P3HA 4PYTA 3NVZB 2YVSA 2W3RA 2BVFA 3TSHA 1MBBA 5ADZA 2VFRA 1V97A 2E3TA 2GQTA 3W8ZA 5I1WA 1WYGA 4OALA 3POPA 1W1SA 2P13A 4JAYA 2Y08A 3NVYB 5AWVA 1N60C 2VFUA 3FW7A 3NRZB 3RJAA 3HSUA 1W1QA 4HG0A 2QKNA 4PVEA 1N62C 1WVEA 1ZXIC 3I99A 3JS8A 5G5GB 1W1KA 3KJMA 2R2ZA 3B9JB 3RJ8A 1DIQA 4MLAA 1E8FA 1E0YA 1AHUA 2P4PA 3S1EA 4EC3A 3S1DA 5L6GA 1FIQB 3AM9A 5HHZA 1JRPA 1N63C 2GQUA 3AMZA 4BBYA 2PLIA 3HRDC 3TX1A 2W55A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DQ0 A;  1AHZ A;  1QLU A;  2VFT A;  2QPM A;  3S1C A;  2Q85 A;  3C0P A;  3FW9 A;  5FXD A;  4PWC A;  4UD8 A;  5HQX A;  2OAI A;  3D2H A;  1F0X A;  3VTE A;  2NQW A;  2VFS A;  4BCA A;  4PZF A;  2O3G A;  3D2J A;  4PWB A;  2VFV A;  4DNS A;  4ZOH B;  1W1O A;  2VAO A;  3BW7 A;  2Q4W A;  1N61 C;  3PM9 A;  1E8H A;  3FW8 A;  1AHV A;  4JB1 A;  1QLT A;  1VDV A;  2W54 A;  1UXY A;  1DII A;  1SB3 B;  2W3S A;  3SR6 B;  2I0K A;  2EXR A;  1W1L A;  1W1R A;  4BC9 A;  5AE3 A;  2MBR A;  1FO4 A;  3TSJ A;  4BC7 A;  5AE2 A;  4XLO A;  3EUB 3;  4ML8 A;  4PVJ A;  2BVG A;  1WVF A;  5AE1 A;  5FXP A;  1HSK A;  1E8G A;  3GSY A;  2PLS A;  1VAO A;  1RM6 B;  3LAE A;  3ETR B;  1T3Q C;  5G5H B;  1W1M A;  1FFU C;  3NS1 B;  1MBT A;  2RK5 A;  4O95 A;  1FFV C;  3D2D A;  2R8D A;  1W1J A;  1N5W C;  3W8X A;  1I19 A;  5FXE A;  5FXF A;  1N5X A;  4PVK A;  3W8W A;  3S1F A;  5HMR A;  1JRO A;  2AXR A;  1DZN A;  3NVW B;  1ZR6 A;  2BVH A;  5D79 A;  3AN1 A;  3FWA A;  4PVH A;  3NVV B;  3LLB A;  3DED A;  2P3H A;  4PYT A;  3NVZ B;  2YVS A;  2W3R A;  2BVF A;  3TSH A;  1MBB A;  5ADZ A;  2VFR A;  1V97 A;  2E3T A;  2GQT A;  3W8Z A;  1WYG A;  4OAL A;  1W1S A;  2P13 A;  4JAY A;  3NVY B;  1N60 C;  2VFU A;  3FW7 A;  3NRZ B;  1W1Q A;  4HG0 A;  2QKN A;  4PVE A;  1N62 C;  1WVE A;  1ZXI C;  3I99 A;  3JS8 A;  5G5G B;  1W1K A;  3KJM A;  2R2Z A;  3B9J B;  1DIQ A;  4MLA A;  1E8F A;  1E0Y A;  1AHU A;  2P4P A;  3S1E A;  4EC3 A;  3S1D A;  1FIQ B;  3AM9 A;  5HHZ A;  1JRP A;  1N63 C;  2GQU A;  3AMZ A;  4BBY A;  2PLI A;  3HRD C;  3TX1 A;  2W55 A; 
#chains in the Genus database with same CATH topology
 3DQ0 A;  1AHZ A;  2Y4G A;  1QLU A;  2VFT A;  2QPM A;  3S1C A;  2Q85 A;  3C0P A;  3FW9 A;  5FXD A;  4PWC A;  4UD8 A;  5HQX A;  2OAI A;  3D2H A;  1F0X A;  2Y3R A;  3VTE A;  2NQW A;  2VFS A;  4BCA A;  3EJD B;  3PQB A;  4PZF A;  2O3G A;  3D2J A;  4PWB A;  2VFV A;  4DNS A;  4ZOH B;  1W1O A;  2VAO A;  3BW7 A;  2Q4W A;  1N61 C;  3PM9 A;  1E8H A;  3EJB B;  3FW8 A;  1AHV A;  4JB1 A;  1QLT A;  1VDV A;  2W54 A;  1UXY A;  1DII A;  1SB3 B;  2W3S A;  3SR6 B;  2I0K A;  2Y3S A;  5I1V A;  2EXR A;  1W1L A;  1W1R A;  4BC9 A;  5AE3 A;  2MBR A;  1FO4 A;  2UUV A;  3TSJ A;  4BC7 A;  5AE2 A;  4XLO A;  3EUB 3;  4ML8 A;  4PVJ A;  2BVG A;  1WVF A;  5AE1 A;  5FXP A;  1HSK A;  5L6F A;  1E8G A;  3GSY A;  2PLS A;  1VAO A;  1RM6 B;  3LAE A;  2IPI A;  3ETR B;  1T3Q C;  5G5H B;  1W1M A;  1FFU C;  3NS1 B;  1MBT A;  2RK5 A;  4O95 A;  1FFV C;  3D2D A;  2R8D A;  2WDW A;  1W1J A;  1N5W C;  3W8X A;  1I19 A;  5FXE A;  5FXF A;  1N5X A;  4PVK A;  3W8W A;  5K8E A;  3S1F A;  5HMR A;  1JRO A;  2AXR A;  1DZN A;  3NVW B;  1ZR6 A;  2BVH A;  5D79 A;  3AN1 A;  2UUU A;  3FWA A;  4PVH A;  3NVV B;  3LLB A;  3DED A;  2P3H A;  4PYT A;  3NVZ B;  2YVS A;  2W3R A;  2BVF A;  3TSH A;  1MBB A;  5ADZ A;  2VFR A;  1V97 A;  2E3T A;  2GQT A;  3W8Z A;  5I1W A;  1WYG A;  4OAL A;  3POP A;  1W1S A;  2P13 A;  4JAY A;  2Y08 A;  3NVY B;  5AWV A;  1N60 C;  2VFU A;  3FW7 A;  3NRZ B;  3RJA A;  3EJE B;  3HSU A;  1W1Q A;  4HG0 A;  2QKN A;  4PVE A;  1N62 C;  1WVE A;  1ZXI C;  3I99 A;  3JS8 A;  5G5G B;  1W1K A;  3KJM A;  2R2Z A;  3B9J B;  3RJ8 A;  1DIQ A;  4MLA A;  1E8F A;  1E0Y A;  1AHU A;  2P4P A;  3S1E A;  4EC3 A;  3S1D A;  5L6G A;  1FIQ B;  3AM9 A;  5HHZ A;  1JRP A;  1N63 C;  2GQU A;  3AMZ A;  4BBY A;  2PLI A;  3HRD C;  3TX1 A;  2W55 A; 
#chains in the Genus database with same CATH homology
 3DQ0 A;  1AHZ A;  2Y4G A;  1QLU A;  2VFT A;  2QPM A;  3S1C A;  2Q85 A;  3C0P A;  3FW9 A;  5FXD A;  4PWC A;  4UD8 A;  5HQX A;  2OAI A;  3D2H A;  1F0X A;  2Y3R A;  3VTE A;  2NQW A;  2VFS A;  4BCA A;  3PQB A;  4PZF A;  2O3G A;  3D2J A;  4PWB A;  2VFV A;  4DNS A;  4ZOH B;  1W1O A;  2VAO A;  3BW7 A;  2Q4W A;  1N61 C;  3PM9 A;  1E8H A;  3FW8 A;  1AHV A;  4JB1 A;  1QLT A;  1VDV A;  2W54 A;  1UXY A;  1DII A;  1SB3 B;  2W3S A;  3SR6 B;  2I0K A;  2Y3S A;  5I1V A;  2EXR A;  1W1L A;  1W1R A;  4BC9 A;  5AE3 A;  2MBR A;  1FO4 A;  2UUV A;  3TSJ A;  4BC7 A;  5AE2 A;  4XLO A;  3EUB 3;  4ML8 A;  4PVJ A;  2BVG A;  1WVF A;  5AE1 A;  5FXP A;  1HSK A;  5L6F A;  1E8G A;  3GSY A;  2PLS A;  1VAO A;  1RM6 B;  3LAE A;  2IPI A;  3ETR B;  1T3Q C;  5G5H B;  1W1M A;  1FFU C;  3NS1 B;  1MBT A;  2RK5 A;  4O95 A;  1FFV C;  3D2D A;  2R8D A;  2WDW A;  1W1J A;  1N5W C;  3W8X A;  1I19 A;  5FXE A;  5FXF A;  1N5X A;  4PVK A;  3W8W A;  5K8E A;  3S1F A;  5HMR A;  1JRO A;  2AXR A;  1DZN A;  3NVW B;  1ZR6 A;  2BVH A;  5D79 A;  3AN1 A;  2UUU A;  3FWA A;  4PVH A;  3NVV B;  3LLB A;  3DED A;  2P3H A;  4PYT A;  3NVZ B;  2YVS A;  2W3R A;  2BVF A;  3TSH A;  1MBB A;  5ADZ A;  2VFR A;  1V97 A;  2E3T A;  2GQT A;  3W8Z A;  5I1W A;  1WYG A;  4OAL A;  3POP A;  1W1S A;  2P13 A;  4JAY A;  2Y08 A;  3NVY B;  5AWV A;  1N60 C;  2VFU A;  3FW7 A;  3NRZ B;  3RJA A;  3HSU A;  1W1Q A;  4HG0 A;  2QKN A;  4PVE A;  1N62 C;  1WVE A;  1ZXI C;  3I99 A;  3JS8 A;  5G5G B;  1W1K A;  3KJM A;  2R2Z A;  3B9J B;  3RJ8 A;  1DIQ A;  4MLA A;  1E8F A;  1E0Y A;  1AHU A;  2P4P A;  3S1E A;  4EC3 A;  3S1D A;  5L6G A;  1FIQ B;  3AM9 A;  5HHZ A;  1JRP A;  1N63 C;  2GQU A;  3AMZ A;  4BBY A;  2PLI A;  3HRD C;  3TX1 A;  2W55 A; 
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