1QLUA

Structure of the h422a mutant vanillyl-alcohol oxidase in complex with isoeugenol
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAALFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Covalent Flavinylation is Essential for Efficient Redox Catalysis in Vanillyl-Alcohol Oxidase
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Penicillium simplicissimum
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 184
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 1999-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1qluA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1qluA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1qluA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1qluA03
1JRPA 2VFSA 3D2DA 3NVVB 3PM9A 1E0YA 2YVSA 1N60C 3W8WA 1T3QC 1SB3B 4JB1A 3AMZA 1N63C 3JS8A 4PWCA 1W1MA 1W1QA 4DNSA 2W3SA 5HMRA 2GQUA 2RK5A 4JAYA 2BVGA 3C0PA 3S1DA 3S1FA 1HSKA 5HHZA 3LLBA 1N5XA 3S1EA 2VFUA 5FXPA 3S1CA 1FFVC 1VDVA 2W54A 2P3HA 3B9JB 2NQWA 1DIIA 2QKNA 4PVEA 1F0XA 1RM6B 4ML8A 3FW8A 2VAOA 1AHZA 3SR6B 3DEDA 3HRDC 2W3RA 1JROA 2E3TA 2R2ZA 2Q4WA 1QLTA 3EUB3 1UXYA 2EXRA 3TSJA 3DQ0A 2VFTA 4PVHA 2VFVA 1N61C 1QLUA 2OAIA 2MBRA 5FXDA 2P4PA 3D2JA 5D79A 4BCAA 4PWBA 1W1OA 3NVZB 3I99A 4PYTA 1I19A 2Q85A 1N62C 2O3GA 1E8FA 4XLOA 2QPMA 3NRZB 4OALA 4PZFA 1W1LA 1FFUC 2GQTA 1WVFA 1MBBA 5AE3A 5FXEA 1MBTA 2PLSA 1E8HA 1W1JA 4HG0A 5G5HB 4BC7A 3TSHA 3FW9A 1W1SA 3GSYA 4BBYA 3KJMA 1WVEA 4EC3A 4PVJA 2R8DA 2W55A 1W1RA 4UD8A 1W1KA 1N5WC 4ZOHB 3AM9A 3W8XA 3AN1A 5FXFA 5AE2A 1ZR6A 3W8ZA 1DIQA 4PVKA 2AXRA 3FWAA 2BVHA 4O95A 2PLIA 3NS1B 3D2HA 3ETRB 5HQXA 2I0KA 1E8GA 4BC9A 3BW7A 5G5GB 3TX1A 2P13A 5AE1A 4MLAA 1V97A 1WYGA 2BVFA 2VFRA 3VTEA 1DZNA 3NVWB 1AHUA 3LAEA 3NVYB 1AHVA 5ADZA 1FIQB 1ZXIC 1FO4A 1VAOA 3FW7A
chains in the Genus database with same CATH superfamily
1JRPA 2VFSA 3D2DA 3NVVB 2WDWA 3PM9A 1E0YA 2YVSA 1N60C 3W8WA 1T3QC 1SB3B 2Y08A 3RJAA 2Y4GA 4JB1A 3AMZA 1N63C 3JS8A 3EJBB 4PWCA 1W1MA 1W1QA 4DNSA 2W3SA 5HMRA 2GQUA 2RK5A 4JAYA 2BVGA 3C0PA 3S1DA 3S1FA 1HSKA 5HHZA 3LLBA 1N5XA 3S1EA 2VFUA 5FXPA 3S1CA 1FFVC 1VDVA 2W54A 2P3HA 3B9JB 2UUUA 2NQWA 1DIIA 2QKNA 4PVEA 5L6GA 1F0XA 1RM6B 4ML8A 3FW8A 2VAOA 1AHZA 3SR6B 3DEDA 3HRDC 2W3RA 2IPIA 1JROA 2E3TA 2R2ZA 2Q4WA 1QLTA 3EUB3 1UXYA 2EXRA 3TSJA 3DQ0A 2Y3RA 2VFTA 2UUVA 4PVHA 2VFVA 1N61C 1QLUA 2OAIA 2MBRA 5FXDA 2P4PA 3D2JA 5D79A 4BCAA 4PWBA 3RJ8A 1W1OA 3NVZB 3I99A 4PYTA 1I19A 2Q85A 1N62C 5K8EA 2O3GA 1E8FA 4XLOA 2QPMA 3NRZB 4OALA 4PZFA 1W1LA 1FFUC 2GQTA 1WVFA 1MBBA 5AE3A 3HSUA 5FXEA 1MBTA 2PLSA 1E8HA 1W1JA 4HG0A 5G5HB 4BC7A 5L6FA 3TSHA 3FW9A 1W1SA 3GSYA 4BBYA 3KJMA 1WVEA 4EC3A 4PVJA 2R8DA 2W55A 1W1RA 4UD8A 1W1KA 5I1WA 1N5WC 4ZOHB 3AM9A 3W8XA 3AN1A 3PQBA 5FXFA 5AE2A 1ZR6A 3W8ZA 1DIQA 4PVKA 2AXRA 3FWAA 2BVHA 4O95A 2PLIA 3NS1B 3D2HA 3ETRB 5HQXA 5I1VA 2I0KA 1E8GA 4BC9A 3BW7A 5G5GB 3TX1A 3EJEB 2P13A 5AE1A 4MLAA 1V97A 2Y3SA 1WYGA 2BVFA 2VFRA 3VTEA 1DZNA 3NVWB 1AHUA 3LAEA 5AWVA 3NVYB 1AHVA 5ADZA 1FIQB 1ZXIC 1FO4A 1VAOA 3POPA 3EJDB 3FW7A
chains in the Genus database with same CATH topology
1JRPA 2VFSA 3D2DA 3NVVB 2WDWA 3PM9A 1E0YA 2YVSA 1N60C 3W8WA 1T3QC 1SB3B 2Y08A 3RJAA 2Y4GA 4JB1A 3AMZA 1N63C 3JS8A 4PWCA 1W1MA 1W1QA 4DNSA 2W3SA 5HMRA 2GQUA 2RK5A 4JAYA 2BVGA 3C0PA 3S1DA 3S1FA 1HSKA 5HHZA 3LLBA 1N5XA 3S1EA 2VFUA 5FXPA 3S1CA 1FFVC 1VDVA 2W54A 2P3HA 3B9JB 2UUUA 2NQWA 1DIIA 2QKNA 4PVEA 5L6GA 1F0XA 1RM6B 4ML8A 3FW8A 2VAOA 1AHZA 3SR6B 3DEDA 3HRDC 2W3RA 2IPIA 1JROA 2E3TA 2R2ZA 2Q4WA 1QLTA 3EUB3 1UXYA 2EXRA 3TSJA 3DQ0A 2Y3RA 2VFTA 2UUVA 4PVHA 2VFVA 1N61C 1QLUA 2OAIA 2MBRA 5FXDA 2P4PA 3D2JA 5D79A 4BCAA 4PWBA 3RJ8A 1W1OA 3NVZB 3I99A 4PYTA 1I19A 2Q85A 1N62C 5K8EA 2O3GA 1E8FA 4XLOA 2QPMA 3NRZB 4OALA 4PZFA 1W1LA 1FFUC 2GQTA 1WVFA 1MBBA 5AE3A 3HSUA 5FXEA 1MBTA 2PLSA 1E8HA 1W1JA 4HG0A 5G5HB 4BC7A 5L6FA 3TSHA 3FW9A 1W1SA 3GSYA 4BBYA 3KJMA 1WVEA 4EC3A 4PVJA 2R8DA 2W55A 1W1RA 4UD8A 1W1KA 5I1WA 1N5WC 4ZOHB 3AM9A 3W8XA 3AN1A 3PQBA 5FXFA 5AE2A 1ZR6A 3W8ZA 1DIQA 4PVKA 2AXRA 3FWAA 2BVHA 4O95A 2PLIA 3NS1B 3D2HA 3ETRB 5HQXA 5I1VA 2I0KA 1E8GA 4BC9A 3BW7A 5G5GB 3TX1A 2P13A 5AE1A 4MLAA 1V97A 2Y3SA 1WYGA 2BVFA 2VFRA 3VTEA 1DZNA 3NVWB 1AHUA 3LAEA 5AWVA 3NVYB 1AHVA 5ADZA 1FIQB 1ZXIC 1FO4A 1VAOA 3POPA 3FW7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JRP A;  2VFS A;  3D2D A;  3NVV B;  3PM9 A;  1E0Y A;  2YVS A;  1N60 C;  3W8W A;  1T3Q C;  1SB3 B;  4JB1 A;  3AMZ A;  1N63 C;  3JS8 A;  4PWC A;  1W1M A;  1W1Q A;  4DNS A;  2W3S A;  5HMR A;  2GQU A;  2RK5 A;  4JAY A;  2BVG A;  3C0P A;  3S1D A;  3S1F A;  1HSK A;  5HHZ A;  3LLB A;  1N5X A;  3S1E A;  2VFU A;  5FXP A;  3S1C A;  1FFV C;  1VDV A;  2W54 A;  2P3H A;  3B9J B;  2NQW A;  1DII A;  2QKN A;  4PVE A;  1F0X A;  1RM6 B;  4ML8 A;  3FW8 A;  2VAO A;  1AHZ A;  3SR6 B;  3DED A;  3HRD C;  2W3R A;  1JRO A;  2E3T A;  2R2Z A;  2Q4W A;  1QLT A;  3EUB 3;  1UXY A;  2EXR A;  3TSJ A;  3DQ0 A;  2VFT A;  4PVH A;  2VFV A;  1N61 C;  1QLU A;  2OAI A;  2MBR A;  5FXD A;  2P4P A;  3D2J A;  5D79 A;  4BCA A;  4PWB A;  1W1O A;  3NVZ B;  3I99 A;  4PYT A;  1I19 A;  2Q85 A;  1N62 C;  2O3G A;  1E8F A;  4XLO A;  2QPM A;  3NRZ B;  4OAL A;  4PZF A;  1W1L A;  1FFU C;  2GQT A;  1WVF A;  1MBB A;  5AE3 A;  5FXE A;  1MBT A;  2PLS A;  1E8H A;  1W1J A;  4HG0 A;  5G5H B;  4BC7 A;  3TSH A;  3FW9 A;  1W1S A;  3GSY A;  4BBY A;  3KJM A;  1WVE A;  4EC3 A;  4PVJ A;  2R8D A;  2W55 A;  1W1R A;  4UD8 A;  1W1K A;  1N5W C;  4ZOH B;  3AM9 A;  3W8X A;  3AN1 A;  5FXF A;  5AE2 A;  1ZR6 A;  3W8Z A;  1DIQ A;  4PVK A;  2AXR A;  3FWA A;  2BVH A;  4O95 A;  2PLI A;  3NS1 B;  3D2H A;  3ETR B;  5HQX A;  2I0K A;  1E8G A;  4BC9 A;  3BW7 A;  5G5G B;  3TX1 A;  2P13 A;  5AE1 A;  4MLA A;  1V97 A;  1WYG A;  2BVF A;  2VFR A;  3VTE A;  1DZN A;  3NVW B;  1AHU A;  3LAE A;  3NVY B;  1AHV A;  5ADZ A;  1FIQ B;  1ZXI C;  1FO4 A;  1VAO A;  3FW7 A; 
#chains in the Genus database with same CATH topology
 1JRP A;  2VFS A;  3D2D A;  3NVV B;  2WDW A;  3PM9 A;  1E0Y A;  2YVS A;  1N60 C;  3W8W A;  1T3Q C;  1SB3 B;  2Y08 A;  3RJA A;  2Y4G A;  4JB1 A;  3AMZ A;  1N63 C;  3JS8 A;  3EJB B;  4PWC A;  1W1M A;  1W1Q A;  4DNS A;  2W3S A;  5HMR A;  2GQU A;  2RK5 A;  4JAY A;  2BVG A;  3C0P A;  3S1D A;  3S1F A;  1HSK A;  5HHZ A;  3LLB A;  1N5X A;  3S1E A;  2VFU A;  5FXP A;  3S1C A;  1FFV C;  1VDV A;  2W54 A;  2P3H A;  3B9J B;  2UUU A;  2NQW A;  1DII A;  2QKN A;  4PVE A;  5L6G A;  1F0X A;  1RM6 B;  4ML8 A;  3FW8 A;  2VAO A;  1AHZ A;  3SR6 B;  3DED A;  3HRD C;  2W3R A;  2IPI A;  1JRO A;  2E3T A;  2R2Z A;  2Q4W A;  1QLT A;  3EUB 3;  1UXY A;  2EXR A;  3TSJ A;  3DQ0 A;  2Y3R A;  2VFT A;  2UUV A;  4PVH A;  2VFV A;  1N61 C;  1QLU A;  2OAI A;  2MBR A;  5FXD A;  2P4P A;  3D2J A;  5D79 A;  4BCA A;  4PWB A;  3RJ8 A;  1W1O A;  3NVZ B;  3I99 A;  4PYT A;  1I19 A;  2Q85 A;  1N62 C;  5K8E A;  2O3G A;  1E8F A;  4XLO A;  2QPM A;  3NRZ B;  4OAL A;  4PZF A;  1W1L A;  1FFU C;  2GQT A;  1WVF A;  1MBB A;  5AE3 A;  3HSU A;  5FXE A;  1MBT A;  2PLS A;  1E8H A;  1W1J A;  4HG0 A;  5G5H B;  4BC7 A;  5L6F A;  3TSH A;  3FW9 A;  1W1S A;  3GSY A;  4BBY A;  3KJM A;  1WVE A;  4EC3 A;  4PVJ A;  2R8D A;  2W55 A;  1W1R A;  4UD8 A;  1W1K A;  5I1W A;  1N5W C;  4ZOH B;  3AM9 A;  3W8X A;  3AN1 A;  3PQB A;  5FXF A;  5AE2 A;  1ZR6 A;  3W8Z A;  1DIQ A;  4PVK A;  2AXR A;  3FWA A;  2BVH A;  4O95 A;  2PLI A;  3NS1 B;  3D2H A;  3ETR B;  5HQX A;  5I1V A;  2I0K A;  1E8G A;  4BC9 A;  3BW7 A;  5G5G B;  3TX1 A;  3EJE B;  2P13 A;  5AE1 A;  4MLA A;  1V97 A;  2Y3S A;  1WYG A;  2BVF A;  2VFR A;  3VTE A;  1DZN A;  3NVW B;  1AHU A;  3LAE A;  5AWV A;  3NVY B;  1AHV A;  5ADZ A;  1FIQ B;  1ZXI C;  1FO4 A;  1VAO A;  3POP A;  3EJD B;  3FW7 A; 
#chains in the Genus database with same CATH homology
 1JRP A;  2VFS A;  3D2D A;  3NVV B;  2WDW A;  3PM9 A;  1E0Y A;  2YVS A;  1N60 C;  3W8W A;  1T3Q C;  1SB3 B;  2Y08 A;  3RJA A;  2Y4G A;  4JB1 A;  3AMZ A;  1N63 C;  3JS8 A;  4PWC A;  1W1M A;  1W1Q A;  4DNS A;  2W3S A;  5HMR A;  2GQU A;  2RK5 A;  4JAY A;  2BVG A;  3C0P A;  3S1D A;  3S1F A;  1HSK A;  5HHZ A;  3LLB A;  1N5X A;  3S1E A;  2VFU A;  5FXP A;  3S1C A;  1FFV C;  1VDV A;  2W54 A;  2P3H A;  3B9J B;  2UUU A;  2NQW A;  1DII A;  2QKN A;  4PVE A;  5L6G A;  1F0X A;  1RM6 B;  4ML8 A;  3FW8 A;  2VAO A;  1AHZ A;  3SR6 B;  3DED A;  3HRD C;  2W3R A;  2IPI A;  1JRO A;  2E3T A;  2R2Z A;  2Q4W A;  1QLT A;  3EUB 3;  1UXY A;  2EXR A;  3TSJ A;  3DQ0 A;  2Y3R A;  2VFT A;  2UUV A;  4PVH A;  2VFV A;  1N61 C;  1QLU A;  2OAI A;  2MBR A;  5FXD A;  2P4P A;  3D2J A;  5D79 A;  4BCA A;  4PWB A;  3RJ8 A;  1W1O A;  3NVZ B;  3I99 A;  4PYT A;  1I19 A;  2Q85 A;  1N62 C;  5K8E A;  2O3G A;  1E8F A;  4XLO A;  2QPM A;  3NRZ B;  4OAL A;  4PZF A;  1W1L A;  1FFU C;  2GQT A;  1WVF A;  1MBB A;  5AE3 A;  3HSU A;  5FXE A;  1MBT A;  2PLS A;  1E8H A;  1W1J A;  4HG0 A;  5G5H B;  4BC7 A;  5L6F A;  3TSH A;  3FW9 A;  1W1S A;  3GSY A;  4BBY A;  3KJM A;  1WVE A;  4EC3 A;  4PVJ A;  2R8D A;  2W55 A;  1W1R A;  4UD8 A;  1W1K A;  5I1W A;  1N5W C;  4ZOH B;  3AM9 A;  3W8X A;  3AN1 A;  3PQB A;  5FXF A;  5AE2 A;  1ZR6 A;  3W8Z A;  1DIQ A;  4PVK A;  2AXR A;  3FWA A;  2BVH A;  4O95 A;  2PLI A;  3NS1 B;  3D2H A;  3ETR B;  5HQX A;  5I1V A;  2I0K A;  1E8G A;  4BC9 A;  3BW7 A;  5G5G B;  3TX1 A;  2P13 A;  5AE1 A;  4MLA A;  1V97 A;  2Y3S A;  1WYG A;  2BVF A;  2VFR A;  3VTE A;  1DZN A;  3NVW B;  1AHU A;  3LAE A;  5AWV A;  3NVY B;  1AHV A;  5ADZ A;  1FIQ B;  1ZXI C;  1FO4 A;  1VAO A;  3POP A;  3FW7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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