1W1KA

Structure of the octameric flavoenzyme vanillyl-alcohol oxidase: ile238thr mutant
Total Genus 182

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
555
structure length
550
Chain Sequence
EFRPLTLPPKLSLSDFNEFIQDIIRIVGSENVEVISVDGSYMKPTHTHDPHHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVERGVGYTPYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKTAHLFPYGFGPYIDGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Penicillium simplicissimum
publication title Laboratory-Evolved Vanillyl-Alcohol Oxidase Produces Natural Vanillin
pubmed doi rcsb
molecule keywords VANILLYL-ALCOHOL OXIDASE
total genus 182
structure length 550
sequence length 555
chains with identical sequence B
ec nomenclature ec 1.1.3.38: Vanillyl-alcohol oxidase.
pdb deposition date 2004-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1w1kA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1kA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1kA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1kA03
1WVFA 3JS8A 2VFSA 5HHZA 2QKNA 3D2DA 3NVYB 3AMZA 3GSYA 1JRPA 3EUB3 4PVKA 3HRDC 2NQWA 1W1OA 3AM9A 3NVVB 3DEDA 1N5XA 1FFVC 1DIQA 4PVJA 1W1LA 2W54A 3BW7A 1FO4A 2P13A 2R8DA 2O3GA 1AHVA 3W8WA 4PWCA 2MBRA 2VFVA 5ADZA 1N60C 1FFUC 1W1KA 1E8FA 2VAOA 3ETRB 4MLAA 4BCAA 2GQTA 5G5GB 1W1MA 5FXFA 3S1FA 1I19A 2R2ZA 4PVHA 4UD8A 5AE2A 1E8HA 3PM9A 2Q4WA 4JB1A 3SR6B 1WVEA 2VFUA 4HG0A 5AE3A 5FXEA 1ZR6A 2AXRA 3LLBA 4DNSA 2Q85A 3S1EA 4ML8A 5HQXA 1N5WC 2VFTA 3B9JB 3TSHA 2BVHA 3FW9A 3NRZB 1W1RA 2BVFA 1E8GA 1ZXIC 2BVGA 4PVEA 2W3SA 2GQUA 1W1SA 2OAIA 1QLUA 3NVZB 5D79A 4ZOHB 3C0PA 3FW8A 1T3QC 1QLTA 4EC3A 1DIIA 4BBYA 3S1CA 1W1QA 4BC9A 4OALA 4PZFA 1JROA 2P3HA 2YVSA 2W3RA 3D2JA 1SB3B 2E3TA 3NS1B 3DQ0A 3TSJA 3NVWB 4O95A 4XLOA 4BC7A 3W8XA 2RK5A 1VAOA 1E0YA 3FW7A 5AE1A 1N63C 4PWBA 3S1DA 3FWAA 3W8ZA 2EXRA 1FIQB 1W1JA 1WYGA 1HSKA 1V97A 4JAYA 1UXYA 3VTEA 2PLIA 1N61C 1VDVA 5G5HB 1MBTA 3TX1A 1AHUA 1RM6B 3I99A 1N62C 2I0KA 2W55A 3KJMA 5HMRA 2P4PA 5FXDA 4PYTA 3LAEA 2VFRA 1AHZA 2PLSA 1MBBA 5FXPA 1F0XA 1DZNA 3AN1A 2QPMA 3D2HA
chains in the Genus database with same CATH superfamily
1WVFA 3JS8A 2VFSA 5I1WA 5HHZA 3EJBB 5L6GA 2QKNA 3POPA 3D2DA 3NVYB 3AMZA 3RJAA 3GSYA 1JRPA 3EUB3 4PVKA 3HRDC 2NQWA 5K8EA 1W1OA 3AM9A 3NVVB 3DEDA 1N5XA 1FFVC 1DIQA 4PVJA 1W1LA 2W54A 3BW7A 1FO4A 2P13A 2R8DA 2O3GA 1AHVA 3W8WA 4PWCA 2MBRA 2VFVA 5ADZA 1N60C 1FFUC 3HSUA 1W1KA 1E8FA 2VAOA 3ETRB 4MLAA 4BCAA 2GQTA 5G5GB 1W1MA 5FXFA 3S1FA 1I19A 2R2ZA 4PVHA 4UD8A 5AE2A 3RJ8A 1E8HA 3PM9A 2Q4WA 2Y3RA 4JB1A 3SR6B 1WVEA 2VFUA 4HG0A 5AE3A 5FXEA 1ZR6A 2AXRA 3LLBA 4DNSA 2Q85A 3S1EA 4ML8A 5HQXA 1N5WC 2VFTA 3B9JB 3TSHA 2BVHA 3FW9A 3NRZB 1W1RA 2BVFA 1E8GA 1ZXIC 2BVGA 4PVEA 2W3SA 3PQBA 2GQUA 1W1SA 2OAIA 1QLUA 3NVZB 5D79A 2Y4GA 4ZOHB 2UUVA 3C0PA 3FW8A 1T3QC 5AWVA 1QLTA 4EC3A 1DIIA 4BBYA 3S1CA 1W1QA 4BC9A 4OALA 4PZFA 1JROA 2UUUA 2P3HA 2YVSA 2W3RA 3D2JA 1SB3B 2E3TA 3NS1B 3DQ0A 3TSJA 3NVWB 4O95A 2Y3SA 4XLOA 4BC7A 3W8XA 2RK5A 1VAOA 5L6FA 1E0YA 3FW7A 5AE1A 1N63C 4PWBA 3S1DA 3FWAA 3W8ZA 2EXRA 1FIQB 1W1JA 1WYGA 1HSKA 1V97A 4JAYA 1UXYA 3VTEA 2PLIA 2Y08A 1N61C 1VDVA 5G5HB 1MBTA 3EJEB 3TX1A 1AHUA 1RM6B 3I99A 5I1VA 1N62C 2I0KA 2W55A 3KJMA 5HMRA 2P4PA 5FXDA 4PYTA 3LAEA 3EJDB 2IPIA 2VFRA 1AHZA 2PLSA 1MBBA 5FXPA 1F0XA 2WDWA 1DZNA 3AN1A 2QPMA 3D2HA
chains in the Genus database with same CATH topology
1WVFA 3JS8A 2VFSA 5I1WA 5HHZA 5L6GA 2QKNA 3POPA 3D2DA 3NVYB 3AMZA 3RJAA 3GSYA 1JRPA 3EUB3 4PVKA 3HRDC 2NQWA 5K8EA 1W1OA 3AM9A 3NVVB 3DEDA 1N5XA 1FFVC 1DIQA 4PVJA 1W1LA 2W54A 3BW7A 1FO4A 2P13A 2R8DA 2O3GA 1AHVA 3W8WA 4PWCA 2MBRA 2VFVA 5ADZA 1N60C 1FFUC 3HSUA 1W1KA 1E8FA 2VAOA 3ETRB 4MLAA 4BCAA 2GQTA 5G5GB 1W1MA 5FXFA 3S1FA 1I19A 2R2ZA 4PVHA 4UD8A 5AE2A 3RJ8A 1E8HA 3PM9A 2Q4WA 2Y3RA 4JB1A 3SR6B 1WVEA 2VFUA 4HG0A 5AE3A 5FXEA 1ZR6A 2AXRA 3LLBA 4DNSA 2Q85A 3S1EA 4ML8A 5HQXA 1N5WC 2VFTA 3B9JB 3TSHA 2BVHA 3FW9A 3NRZB 1W1RA 2BVFA 1E8GA 1ZXIC 2BVGA 4PVEA 2W3SA 3PQBA 2GQUA 1W1SA 2OAIA 1QLUA 3NVZB 5D79A 2Y4GA 4ZOHB 2UUVA 3C0PA 3FW8A 1T3QC 5AWVA 1QLTA 4EC3A 1DIIA 4BBYA 3S1CA 1W1QA 4BC9A 4OALA 4PZFA 1JROA 2UUUA 2P3HA 2YVSA 2W3RA 3D2JA 1SB3B 2E3TA 3NS1B 3DQ0A 3TSJA 3NVWB 4O95A 2Y3SA 4XLOA 4BC7A 3W8XA 2RK5A 1VAOA 5L6FA 1E0YA 3FW7A 5AE1A 1N63C 4PWBA 3S1DA 3FWAA 3W8ZA 2EXRA 1FIQB 1W1JA 1WYGA 1HSKA 1V97A 4JAYA 1UXYA 3VTEA 2PLIA 2Y08A 1N61C 1VDVA 5G5HB 1MBTA 3TX1A 1AHUA 1RM6B 3I99A 5I1VA 1N62C 2I0KA 2W55A 3KJMA 5HMRA 2P4PA 5FXDA 4PYTA 3LAEA 2IPIA 2VFRA 1AHZA 2PLSA 1MBBA 5FXPA 1F0XA 2WDWA 1DZNA 3AN1A 2QPMA 3D2HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WVF A;  3JS8 A;  2VFS A;  5HHZ A;  2QKN A;  3D2D A;  3NVY B;  3AMZ A;  3GSY A;  1JRP A;  3EUB 3;  4PVK A;  3HRD C;  2NQW A;  1W1O A;  3AM9 A;  3NVV B;  3DED A;  1N5X A;  1FFV C;  1DIQ A;  4PVJ A;  1W1L A;  2W54 A;  3BW7 A;  1FO4 A;  2P13 A;  2R8D A;  2O3G A;  1AHV A;  3W8W A;  4PWC A;  2MBR A;  2VFV A;  5ADZ A;  1N60 C;  1FFU C;  1W1K A;  1E8F A;  2VAO A;  3ETR B;  4MLA A;  4BCA A;  2GQT A;  5G5G B;  1W1M A;  5FXF A;  3S1F A;  1I19 A;  2R2Z A;  4PVH A;  4UD8 A;  5AE2 A;  1E8H A;  3PM9 A;  2Q4W A;  4JB1 A;  3SR6 B;  1WVE A;  2VFU A;  4HG0 A;  5AE3 A;  5FXE A;  1ZR6 A;  2AXR A;  3LLB A;  4DNS A;  2Q85 A;  3S1E A;  4ML8 A;  5HQX A;  1N5W C;  2VFT A;  3B9J B;  3TSH A;  2BVH A;  3FW9 A;  3NRZ B;  1W1R A;  2BVF A;  1E8G A;  1ZXI C;  2BVG A;  4PVE A;  2W3S A;  2GQU A;  1W1S A;  2OAI A;  1QLU A;  3NVZ B;  5D79 A;  4ZOH B;  3C0P A;  3FW8 A;  1T3Q C;  1QLT A;  4EC3 A;  1DII A;  4BBY A;  3S1C A;  1W1Q A;  4BC9 A;  4OAL A;  4PZF A;  1JRO A;  2P3H A;  2YVS A;  2W3R A;  3D2J A;  1SB3 B;  2E3T A;  3NS1 B;  3DQ0 A;  3TSJ A;  3NVW B;  4O95 A;  4XLO A;  4BC7 A;  3W8X A;  2RK5 A;  1VAO A;  1E0Y A;  3FW7 A;  5AE1 A;  1N63 C;  4PWB A;  3S1D A;  3FWA A;  3W8Z A;  2EXR A;  1FIQ B;  1W1J A;  1WYG A;  1HSK A;  1V97 A;  4JAY A;  1UXY A;  3VTE A;  2PLI A;  1N61 C;  1VDV A;  5G5H B;  1MBT A;  3TX1 A;  1AHU A;  1RM6 B;  3I99 A;  1N62 C;  2I0K A;  2W55 A;  3KJM A;  5HMR A;  2P4P A;  5FXD A;  4PYT A;  3LAE A;  2VFR A;  1AHZ A;  2PLS A;  1MBB A;  5FXP A;  1F0X A;  1DZN A;  3AN1 A;  2QPM A;  3D2H A; 
#chains in the Genus database with same CATH topology
 1WVF A;  3JS8 A;  2VFS A;  5I1W A;  5HHZ A;  3EJB B;  5L6G A;  2QKN A;  3POP A;  3D2D A;  3NVY B;  3AMZ A;  3RJA A;  3GSY A;  1JRP A;  3EUB 3;  4PVK A;  3HRD C;  2NQW A;  5K8E A;  1W1O A;  3AM9 A;  3NVV B;  3DED A;  1N5X A;  1FFV C;  1DIQ A;  4PVJ A;  1W1L A;  2W54 A;  3BW7 A;  1FO4 A;  2P13 A;  2R8D A;  2O3G A;  1AHV A;  3W8W A;  4PWC A;  2MBR A;  2VFV A;  5ADZ A;  1N60 C;  1FFU C;  3HSU A;  1W1K A;  1E8F A;  2VAO A;  3ETR B;  4MLA A;  4BCA A;  2GQT A;  5G5G B;  1W1M A;  5FXF A;  3S1F A;  1I19 A;  2R2Z A;  4PVH A;  4UD8 A;  5AE2 A;  3RJ8 A;  1E8H A;  3PM9 A;  2Q4W A;  2Y3R A;  4JB1 A;  3SR6 B;  1WVE A;  2VFU A;  4HG0 A;  5AE3 A;  5FXE A;  1ZR6 A;  2AXR A;  3LLB A;  4DNS A;  2Q85 A;  3S1E A;  4ML8 A;  5HQX A;  1N5W C;  2VFT A;  3B9J B;  3TSH A;  2BVH A;  3FW9 A;  3NRZ B;  1W1R A;  2BVF A;  1E8G A;  1ZXI C;  2BVG A;  4PVE A;  2W3S A;  3PQB A;  2GQU A;  1W1S A;  2OAI A;  1QLU A;  3NVZ B;  5D79 A;  2Y4G A;  4ZOH B;  2UUV A;  3C0P A;  3FW8 A;  1T3Q C;  5AWV A;  1QLT A;  4EC3 A;  1DII A;  4BBY A;  3S1C A;  1W1Q A;  4BC9 A;  4OAL A;  4PZF A;  1JRO A;  2UUU A;  2P3H A;  2YVS A;  2W3R A;  3D2J A;  1SB3 B;  2E3T A;  3NS1 B;  3DQ0 A;  3TSJ A;  3NVW B;  4O95 A;  2Y3S A;  4XLO A;  4BC7 A;  3W8X A;  2RK5 A;  1VAO A;  5L6F A;  1E0Y A;  3FW7 A;  5AE1 A;  1N63 C;  4PWB A;  3S1D A;  3FWA A;  3W8Z A;  2EXR A;  1FIQ B;  1W1J A;  1WYG A;  1HSK A;  1V97 A;  4JAY A;  1UXY A;  3VTE A;  2PLI A;  2Y08 A;  1N61 C;  1VDV A;  5G5H B;  1MBT A;  3EJE B;  3TX1 A;  1AHU A;  1RM6 B;  3I99 A;  5I1V A;  1N62 C;  2I0K A;  2W55 A;  3KJM A;  5HMR A;  2P4P A;  5FXD A;  4PYT A;  3LAE A;  3EJD B;  2IPI A;  2VFR A;  1AHZ A;  2PLS A;  1MBB A;  5FXP A;  1F0X A;  2WDW A;  1DZN A;  3AN1 A;  2QPM A;  3D2H A; 
#chains in the Genus database with same CATH homology
 1WVF A;  3JS8 A;  2VFS A;  5I1W A;  5HHZ A;  5L6G A;  2QKN A;  3POP A;  3D2D A;  3NVY B;  3AMZ A;  3RJA A;  3GSY A;  1JRP A;  3EUB 3;  4PVK A;  3HRD C;  2NQW A;  5K8E A;  1W1O A;  3AM9 A;  3NVV B;  3DED A;  1N5X A;  1FFV C;  1DIQ A;  4PVJ A;  1W1L A;  2W54 A;  3BW7 A;  1FO4 A;  2P13 A;  2R8D A;  2O3G A;  1AHV A;  3W8W A;  4PWC A;  2MBR A;  2VFV A;  5ADZ A;  1N60 C;  1FFU C;  3HSU A;  1W1K A;  1E8F A;  2VAO A;  3ETR B;  4MLA A;  4BCA A;  2GQT A;  5G5G B;  1W1M A;  5FXF A;  3S1F A;  1I19 A;  2R2Z A;  4PVH A;  4UD8 A;  5AE2 A;  3RJ8 A;  1E8H A;  3PM9 A;  2Q4W A;  2Y3R A;  4JB1 A;  3SR6 B;  1WVE A;  2VFU A;  4HG0 A;  5AE3 A;  5FXE A;  1ZR6 A;  2AXR A;  3LLB A;  4DNS A;  2Q85 A;  3S1E A;  4ML8 A;  5HQX A;  1N5W C;  2VFT A;  3B9J B;  3TSH A;  2BVH A;  3FW9 A;  3NRZ B;  1W1R A;  2BVF A;  1E8G A;  1ZXI C;  2BVG A;  4PVE A;  2W3S A;  3PQB A;  2GQU A;  1W1S A;  2OAI A;  1QLU A;  3NVZ B;  5D79 A;  2Y4G A;  4ZOH B;  2UUV A;  3C0P A;  3FW8 A;  1T3Q C;  5AWV A;  1QLT A;  4EC3 A;  1DII A;  4BBY A;  3S1C A;  1W1Q A;  4BC9 A;  4OAL A;  4PZF A;  1JRO A;  2UUU A;  2P3H A;  2YVS A;  2W3R A;  3D2J A;  1SB3 B;  2E3T A;  3NS1 B;  3DQ0 A;  3TSJ A;  3NVW B;  4O95 A;  2Y3S A;  4XLO A;  4BC7 A;  3W8X A;  2RK5 A;  1VAO A;  5L6F A;  1E0Y A;  3FW7 A;  5AE1 A;  1N63 C;  4PWB A;  3S1D A;  3FWA A;  3W8Z A;  2EXR A;  1FIQ B;  1W1J A;  1WYG A;  1HSK A;  1V97 A;  4JAY A;  1UXY A;  3VTE A;  2PLI A;  2Y08 A;  1N61 C;  1VDV A;  5G5H B;  1MBT A;  3TX1 A;  1AHU A;  1RM6 B;  3I99 A;  5I1V A;  1N62 C;  2I0K A;  2W55 A;  3KJM A;  5HMR A;  2P4P A;  5FXD A;  4PYT A;  3LAE A;  2IPI A;  2VFR A;  1AHZ A;  2PLS A;  1MBB A;  5FXP A;  1F0X A;  2WDW A;  1DZN A;  3AN1 A;  2QPM A;  3D2H A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.