1W1RA

Plant cytokinin dehydrogenase in complex with trans-zeatin
Total Genus 167
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
495
structure length
479
Chain Sequence
ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Zea mays
publication title Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis
pubmed doi rcsb
molecule keywords CYTOKININ DEHYDROGENASE 1
total genus 167
structure length 479
sequence length 495
ec nomenclature ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date 2004-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF09265 Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1w1rA01
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1w1rA02
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1w1rA03
1DIQA 3W8XA 1AHUA 3D2DA 2OAIA 2VFVA 5FXDA 3D2JA 1N5XA 3S1DA 1E8HA 2QPMA 5AE1A 4BCAA 1N60C 4PWCA 1AHZA 5AE2A 1E8FA 1RM6B 3SR6B 1N63C 5FXPA 5HMRA 4PVKA 1W1JA 5G5HB 2O3GA 2W55A 4BBYA 1WYGA 4PYTA 1ZR6A 5HHZA 1DIIA 1T3QC 3S1CA 2QKNA 3VTEA 2GQUA 1WVEA 2E3TA 2BVHA 3DQ0A 3DEDA 3NVWB 5ADZA 2BVFA 3S1FA 2YVSA 4ML8A 1WVFA 3AN1A 3TX1A 1W1RA 2Q85A 4JAYA 2VFUA 2RK5A 1E0YA 3FWAA 3S1EA 3W8WA 3EUB3 4PZFA 1JRPA 1ZXIC 4OALA 1N61C 1VDVA 3LLBA 2GQTA 1JROA 5FXEA 2AXRA 2MBRA 3HRDC 1W1OA 1FFUC 4ZOHB 2W3SA 3NVZB 3PM9A 4BC7A 2P4PA 1V97A 1QLUA 1N62C 1FFVC 3FW9A 4O95A 2W3RA 3W8ZA 2P13A 2PLIA 5G5GB 1I19A 1AHVA 1W1MA 5FXFA 1SB3B 3JS8A 4UD8A 4PVJA 2W54A 2R2ZA 3NRZB 1UXYA 1VAOA 3AMZA 3D2HA 3BW7A 4XLOA 2VFSA 3NVVB 1W1KA 3ETRB 3B9JB 3NS1B 5HQXA 1FO4A 3LAEA 1DZNA 1FIQB 2VFRA 3GSYA 4PVHA 3AM9A 2P3HA 2BVGA 1W1LA 4BC9A 3NVYB 3FW7A 2NQWA 1W1QA 4DNSA 5AE3A 2VFTA 4PWBA 1N5WC 2VAOA 1E8GA 2I0KA 3TSJA 3C0PA 4MLAA 3KJMA 1MBBA 1F0XA 4PVEA 2R8DA 3FW8A 2PLSA 4HG0A 2EXRA 3I99A 1MBTA 1QLTA 5D79A 4JB1A 1W1SA 3TSHA 2Q4WA 1HSKA 4EC3A
chains in the Genus database with same CATH superfamily
1DIQA 3W8XA 1AHUA 3D2DA 2OAIA 2VFVA 5L6GA 5FXDA 3D2JA 5K8EA 1N5XA 3S1DA 1E8HA 2QPMA 5AE1A 4BCAA 1N60C 4PWCA 1AHZA 5AE2A 3HSUA 1E8FA 1RM6B 3SR6B 1N63C 5FXPA 5HMRA 4PVKA 1W1JA 5G5HB 2O3GA 2W55A 4BBYA 2Y3SA 1WYGA 4PYTA 1ZR6A 3RJAA 5HHZA 1DIIA 1T3QC 3EJDB 3S1CA 5I1VA 2QKNA 3EJEB 3VTEA 2GQUA 1WVEA 2E3TA 2BVHA 3DQ0A 3DEDA 3NVWB 5ADZA 2BVFA 3S1FA 2YVSA 4ML8A 1WVFA 3AN1A 3TX1A 1W1RA 2Q85A 4JAYA 2VFUA 2WDWA 2RK5A 1E0YA 3FWAA 2Y08A 3S1EA 3W8WA 3EUB3 4PZFA 1JRPA 1ZXIC 4OALA 1N61C 1VDVA 3LLBA 3PQBA 5I1WA 2GQTA 1JROA 5FXEA 2AXRA 2MBRA 3HRDC 1W1OA 2UUVA 3POPA 1FFUC 4ZOHB 2W3SA 3NVZB 3PM9A 4BC7A 2P4PA 1V97A 1QLUA 1N62C 1FFVC 3FW9A 4O95A 2W3RA 3W8ZA 2P13A 2PLIA 5G5GB 1I19A 1AHVA 1W1MA 3RJ8A 5FXFA 1SB3B 3JS8A 4UD8A 4PVJA 2W54A 2Y3RA 2R2ZA 3NRZB 1UXYA 2Y4GA 1VAOA 5L6FA 3AMZA 3D2HA 3BW7A 4XLOA 2VFSA 3NVVB 1W1KA 3ETRB 3B9JB 3NS1B 5HQXA 1FO4A 3LAEA 1DZNA 1FIQB 2VFRA 3GSYA 4PVHA 3AM9A 2P3HA 2BVGA 1W1LA 4BC9A 3EJBB 3FW7A 3NVYB 2NQWA 1W1QA 4DNSA 5AE3A 2VFTA 4PWBA 1N5WC 2VAOA 1E8GA 2I0KA 3TSJA 3C0PA 4MLAA 3KJMA 1MBBA 1F0XA 4PVEA 2R8DA 3FW8A 2PLSA 4HG0A 2EXRA 2IPIA 5AWVA 3I99A 1MBTA 1QLTA 5D79A 4JB1A 1W1SA 2UUUA 3TSHA 2Q4WA 1HSKA 4EC3A
chains in the Genus database with same CATH topology
1DIQA 3W8XA 1AHUA 3D2DA 2OAIA 2VFVA 5L6GA 5FXDA 3D2JA 5K8EA 1N5XA 3S1DA 1E8HA 2QPMA 5AE1A 4BCAA 1N60C 4PWCA 1AHZA 5AE2A 3HSUA 1E8FA 1RM6B 3SR6B 1N63C 5FXPA 5HMRA 4PVKA 1W1JA 5G5HB 2O3GA 2W55A 4BBYA 2Y3SA 1WYGA 4PYTA 1ZR6A 3RJAA 5HHZA 1DIIA 1T3QC 3S1CA 5I1VA 2QKNA 3VTEA 2GQUA 1WVEA 2E3TA 2BVHA 3DQ0A 3DEDA 3NVWB 5ADZA 2BVFA 3S1FA 2YVSA 4ML8A 1WVFA 3AN1A 3TX1A 1W1RA 2Q85A 4JAYA 2VFUA 2WDWA 2RK5A 1E0YA 3FWAA 2Y08A 3S1EA 3W8WA 3EUB3 4PZFA 1JRPA 1ZXIC 4OALA 1N61C 1VDVA 3LLBA 3PQBA 5I1WA 2GQTA 1JROA 5FXEA 2AXRA 2MBRA 3HRDC 1W1OA 2UUVA 3POPA 1FFUC 4ZOHB 2W3SA 3NVZB 3PM9A 4BC7A 2P4PA 1V97A 1QLUA 1N62C 1FFVC 3FW9A 4O95A 2W3RA 3W8ZA 2P13A 2PLIA 5G5GB 1I19A 1AHVA 1W1MA 3RJ8A 5FXFA 1SB3B 3JS8A 4UD8A 4PVJA 2W54A 2Y3RA 2R2ZA 3NRZB 1UXYA 2Y4GA 1VAOA 5L6FA 3AMZA 3D2HA 3BW7A 4XLOA 2VFSA 3NVVB 1W1KA 3ETRB 3B9JB 3NS1B 5HQXA 1FO4A 3LAEA 1DZNA 1FIQB 2VFRA 3GSYA 4PVHA 3AM9A 2P3HA 2BVGA 1W1LA 4BC9A 3NVYB 3FW7A 2NQWA 1W1QA 4DNSA 5AE3A 2VFTA 4PWBA 1N5WC 2VAOA 1E8GA 2I0KA 3TSJA 3C0PA 4MLAA 3KJMA 1MBBA 1F0XA 4PVEA 2R8DA 3FW8A 2PLSA 4HG0A 2EXRA 2IPIA 5AWVA 3I99A 1MBTA 1QLTA 5D79A 4JB1A 1W1SA 2UUUA 3TSHA 2Q4WA 1HSKA 4EC3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DIQ A;  3W8X A;  1AHU A;  3D2D A;  2OAI A;  2VFV A;  5FXD A;  3D2J A;  1N5X A;  3S1D A;  1E8H A;  2QPM A;  5AE1 A;  4BCA A;  1N60 C;  4PWC A;  1AHZ A;  5AE2 A;  1E8F A;  1RM6 B;  3SR6 B;  1N63 C;  5FXP A;  5HMR A;  4PVK A;  1W1J A;  5G5H B;  2O3G A;  2W55 A;  4BBY A;  1WYG A;  4PYT A;  1ZR6 A;  5HHZ A;  1DII A;  1T3Q C;  3S1C A;  2QKN A;  3VTE A;  2GQU A;  1WVE A;  2E3T A;  2BVH A;  3DQ0 A;  3DED A;  3NVW B;  5ADZ A;  2BVF A;  3S1F A;  2YVS A;  4ML8 A;  1WVF A;  3AN1 A;  3TX1 A;  1W1R A;  2Q85 A;  4JAY A;  2VFU A;  2RK5 A;  1E0Y A;  3FWA A;  3S1E A;  3W8W A;  3EUB 3;  4PZF A;  1JRP A;  1ZXI C;  4OAL A;  1N61 C;  1VDV A;  3LLB A;  2GQT A;  1JRO A;  5FXE A;  2AXR A;  2MBR A;  3HRD C;  1W1O A;  1FFU C;  4ZOH B;  2W3S A;  3NVZ B;  3PM9 A;  4BC7 A;  2P4P A;  1V97 A;  1QLU A;  1N62 C;  1FFV C;  3FW9 A;  4O95 A;  2W3R A;  3W8Z A;  2P13 A;  2PLI A;  5G5G B;  1I19 A;  1AHV A;  1W1M A;  5FXF A;  1SB3 B;  3JS8 A;  4UD8 A;  4PVJ A;  2W54 A;  2R2Z A;  3NRZ B;  1UXY A;  1VAO A;  3AMZ A;  3D2H A;  3BW7 A;  4XLO A;  2VFS A;  3NVV B;  1W1K A;  3ETR B;  3B9J B;  3NS1 B;  5HQX A;  1FO4 A;  3LAE A;  1DZN A;  1FIQ B;  2VFR A;  3GSY A;  4PVH A;  3AM9 A;  2P3H A;  2BVG A;  1W1L A;  4BC9 A;  3NVY B;  3FW7 A;  2NQW A;  1W1Q A;  4DNS A;  5AE3 A;  2VFT A;  4PWB A;  1N5W C;  2VAO A;  1E8G A;  2I0K A;  3TSJ A;  3C0P A;  4MLA A;  3KJM A;  1MBB A;  1F0X A;  4PVE A;  2R8D A;  3FW8 A;  2PLS A;  4HG0 A;  2EXR A;  3I99 A;  1MBT A;  1QLT A;  5D79 A;  4JB1 A;  1W1S A;  3TSH A;  2Q4W A;  1HSK A;  4EC3 A; 
#chains in the Genus database with same CATH topology
 1DIQ A;  3W8X A;  1AHU A;  3D2D A;  2OAI A;  2VFV A;  5L6G A;  5FXD A;  3D2J A;  5K8E A;  1N5X A;  3S1D A;  1E8H A;  2QPM A;  5AE1 A;  4BCA A;  1N60 C;  4PWC A;  1AHZ A;  5AE2 A;  3HSU A;  1E8F A;  1RM6 B;  3SR6 B;  1N63 C;  5FXP A;  5HMR A;  4PVK A;  1W1J A;  5G5H B;  2O3G A;  2W55 A;  4BBY A;  2Y3S A;  1WYG A;  4PYT A;  1ZR6 A;  3RJA A;  5HHZ A;  1DII A;  1T3Q C;  3EJD B;  3S1C A;  5I1V A;  2QKN A;  3EJE B;  3VTE A;  2GQU A;  1WVE A;  2E3T A;  2BVH A;  3DQ0 A;  3DED A;  3NVW B;  5ADZ A;  2BVF A;  3S1F A;  2YVS A;  4ML8 A;  1WVF A;  3AN1 A;  3TX1 A;  1W1R A;  2Q85 A;  4JAY A;  2VFU A;  2WDW A;  2RK5 A;  1E0Y A;  3FWA A;  2Y08 A;  3S1E A;  3W8W A;  3EUB 3;  4PZF A;  1JRP A;  1ZXI C;  4OAL A;  1N61 C;  1VDV A;  3LLB A;  3PQB A;  5I1W A;  2GQT A;  1JRO A;  5FXE A;  2AXR A;  2MBR A;  3HRD C;  1W1O A;  2UUV A;  3POP A;  1FFU C;  4ZOH B;  2W3S A;  3NVZ B;  3PM9 A;  4BC7 A;  2P4P A;  1V97 A;  1QLU A;  1N62 C;  1FFV C;  3FW9 A;  4O95 A;  2W3R A;  3W8Z A;  2P13 A;  2PLI A;  5G5G B;  1I19 A;  1AHV A;  1W1M A;  3RJ8 A;  5FXF A;  1SB3 B;  3JS8 A;  4UD8 A;  4PVJ A;  2W54 A;  2Y3R A;  2R2Z A;  3NRZ B;  1UXY A;  2Y4G A;  1VAO A;  5L6F A;  3AMZ A;  3D2H A;  3BW7 A;  4XLO A;  2VFS A;  3NVV B;  1W1K A;  3ETR B;  3B9J B;  3NS1 B;  5HQX A;  1FO4 A;  3LAE A;  1DZN A;  1FIQ B;  2VFR A;  3GSY A;  4PVH A;  3AM9 A;  2P3H A;  2BVG A;  1W1L A;  4BC9 A;  3EJB B;  3FW7 A;  3NVY B;  2NQW A;  1W1Q A;  4DNS A;  5AE3 A;  2VFT A;  4PWB A;  1N5W C;  2VAO A;  1E8G A;  2I0K A;  3TSJ A;  3C0P A;  4MLA A;  3KJM A;  1MBB A;  1F0X A;  4PVE A;  2R8D A;  3FW8 A;  2PLS A;  4HG0 A;  2EXR A;  2IPI A;  5AWV A;  3I99 A;  1MBT A;  1QLT A;  5D79 A;  4JB1 A;  1W1S A;  2UUU A;  3TSH A;  2Q4W A;  1HSK A;  4EC3 A; 
#chains in the Genus database with same CATH homology
 1DIQ A;  3W8X A;  1AHU A;  3D2D A;  2OAI A;  2VFV A;  5L6G A;  5FXD A;  3D2J A;  5K8E A;  1N5X A;  3S1D A;  1E8H A;  2QPM A;  5AE1 A;  4BCA A;  1N60 C;  4PWC A;  1AHZ A;  5AE2 A;  3HSU A;  1E8F A;  1RM6 B;  3SR6 B;  1N63 C;  5FXP A;  5HMR A;  4PVK A;  1W1J A;  5G5H B;  2O3G A;  2W55 A;  4BBY A;  2Y3S A;  1WYG A;  4PYT A;  1ZR6 A;  3RJA A;  5HHZ A;  1DII A;  1T3Q C;  3S1C A;  5I1V A;  2QKN A;  3VTE A;  2GQU A;  1WVE A;  2E3T A;  2BVH A;  3DQ0 A;  3DED A;  3NVW B;  5ADZ A;  2BVF A;  3S1F A;  2YVS A;  4ML8 A;  1WVF A;  3AN1 A;  3TX1 A;  1W1R A;  2Q85 A;  4JAY A;  2VFU A;  2WDW A;  2RK5 A;  1E0Y A;  3FWA A;  2Y08 A;  3S1E A;  3W8W A;  3EUB 3;  4PZF A;  1JRP A;  1ZXI C;  4OAL A;  1N61 C;  1VDV A;  3LLB A;  3PQB A;  5I1W A;  2GQT A;  1JRO A;  5FXE A;  2AXR A;  2MBR A;  3HRD C;  1W1O A;  2UUV A;  3POP A;  1FFU C;  4ZOH B;  2W3S A;  3NVZ B;  3PM9 A;  4BC7 A;  2P4P A;  1V97 A;  1QLU A;  1N62 C;  1FFV C;  3FW9 A;  4O95 A;  2W3R A;  3W8Z A;  2P13 A;  2PLI A;  5G5G B;  1I19 A;  1AHV A;  1W1M A;  3RJ8 A;  5FXF A;  1SB3 B;  3JS8 A;  4UD8 A;  4PVJ A;  2W54 A;  2Y3R A;  2R2Z A;  3NRZ B;  1UXY A;  2Y4G A;  1VAO A;  5L6F A;  3AMZ A;  3D2H A;  3BW7 A;  4XLO A;  2VFS A;  3NVV B;  1W1K A;  3ETR B;  3B9J B;  3NS1 B;  5HQX A;  1FO4 A;  3LAE A;  1DZN A;  1FIQ B;  2VFR A;  3GSY A;  4PVH A;  3AM9 A;  2P3H A;  2BVG A;  1W1L A;  4BC9 A;  3NVY B;  3FW7 A;  2NQW A;  1W1Q A;  4DNS A;  5AE3 A;  2VFT A;  4PWB A;  1N5W C;  2VAO A;  1E8G A;  2I0K A;  3TSJ A;  3C0P A;  4MLA A;  3KJM A;  1MBB A;  1F0X A;  4PVE A;  2R8D A;  3FW8 A;  2PLS A;  4HG0 A;  2EXR A;  2IPI A;  5AWV A;  3I99 A;  1MBT A;  1QLT A;  5D79 A;  4JB1 A;  1W1S A;  2UUU A;  3TSH A;  2Q4W A;  1HSK A;  4EC3 A; 
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