1W1S | Genus

Total Genus 170

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	170
sequence length	495
structure length	479
Chain Sequence	ALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Zea mays
publication title	Structures of Michaelis and Product Complexes of Plant Cytokinin Dehydrogenase: Implications for Flavoenzyme Catalysis pubmed doi rcsb
molecule keywords	CYTOKININ DEHYDROGENASE
total genus	170
structure length	479
sequence length	495
ec nomenclature	ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date	2004-06-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF09265	Cytokin-bind	Cytokinin dehydrogenase 1, FAD and cytokinin binding

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	1w1sA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	1w1sA02
3.40.462.10	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	FAD-linked oxidases, C-terminal domain	1w1sA03

3D2JA 3I99A 2GQUA 1DIIA 2MBRA 4EC3A 2P13A 1N63C 2VFVA 3LLBA 2VFRA 4BBYA 1DZNA 1E8HA 1JROA 2W3RA 3JS8A 1W1LA 5AE1A 2RK5A 4PVJA 1N61C 1N60C 5G5GB 3D2HA 3FW8A 3SR6B 5AE3A 4PVEA 1F0XA 1W1QA 4ML8A 5HMRA 4JB1A 3KJMA 3HRDC 4XLOA 3TSJA 5HHZA 1W1KA 1W1JA 4JAYA 1E8FA 3B9JB 1W1SA 3W8WA 1HSKA 3W8XA 2EXRA 5ADZA 3NVWB 1FIQB 3S1DA 4PZFA 2QPMA 3NVZB 3GSYA 3DQ0A 2NQWA 1N5XA 1AHVA 2QKNA 2VFUA 1QLTA 3AMZA 2PLIA 2VFTA 4DNSA 5G5HB 2BVFA 1I19A 1W1RA 3TX1A 3ETRB 1WVEA 2E3TA 2BVGA 2P3HA 3FWAA 1FFVC 4O95A 1V97A 5AE2A 5HQXA 3NS1B 3VTEA 5FXPA 2VAOA 3S1EA 5FXFA 1FO4A 3AN1A 4BC7A 1W1MA 2W54A 1AHZA 3NVYB 3BW7A 3NVVB 3NRZB 1RM6B 4BCAA 5D79A 2P4PA 3FW7A 1FFUC 1JRPA 4UD8A 3W8ZA 1VAOA 1MBBA 4PVHA 1UXYA 3FW9A 1WVFA 2AXRA 2GQTA 1SB3B 2I0KA 2Q85A 3S1FA 2R8DA 2VFSA 3D2DA 1ZXIC 1N5WC 3TSHA 2BVHA 1AHUA 1W1OA 2R2ZA 1QLUA 1WYGA 1E0YA 1VDVA 3C0PA 4PWBA 1T3QC 4BC9A 2O3GA 2W55A 2Q4WA 2OAIA 2W3SA 3LAEA 1N62C 5FXEA 4OALA 1E8GA 3DEDA 3PM9A 4MLAA 1DIQA 2YVSA 4PYTA 4HG0A 1MBTA 3AM9A 4PWCA 3EUB3 5FXDA 3S1CA 4PVKA 4ZOHB 2PLSA 1ZR6A
chains in the Genus database with same CATH superfamily

3D2JA 3I99A 2GQUA 1DIIA 2MBRA 4EC3A 2P13A 1N63C 2VFVA 3LLBA 2VFRA 4BBYA 1DZNA 1E8HA 1JROA 3RJ8A 3EJEB 2W3RA 3JS8A 1W1LA 5AE1A 2Y4GA 2RK5A 4PVJA 1N61C 1N60C 5L6FA 5G5GB 3D2HA 3FW8A 3SR6B 5AE3A 2Y3RA 4PVEA 1F0XA 1W1QA 4ML8A 5HMRA 4JB1A 3KJMA 3HRDC 4XLOA 3TSJA 5HHZA 1W1KA 1W1JA 4JAYA 1E8FA 3B9JB 1W1SA 3W8WA 1HSKA 3EJBB 3W8XA 2EXRA 5ADZA 3NVWB 1FIQB 3S1DA 2Y08A 4PZFA 2QPMA 2IPIA 3NVZB 3GSYA 3DQ0A 2NQWA 1N5XA 1AHVA 2QKNA 2VFUA 1QLTA 3AMZA 2PLIA 2VFTA 4DNSA 5G5HB 2BVFA 1I19A 1W1RA 3TX1A 3ETRB 1WVEA 2E3TA 2BVGA 2P3HA 3FWAA 1FFVC 5I1VA 5K8EA 4O95A 1V97A 5AE2A 5HQXA 3NS1B 3VTEA 5FXPA 2Y3SA 2VAOA 3S1EA 5FXFA 1FO4A 3AN1A 4BC7A 5AWVA 1W1MA 2W54A 2UUUA 1AHZA 3NVYB 3BW7A 3NVVB 3NRZB 1RM6B 3HSUA 4BCAA 5D79A 2P4PA 3FW7A 1FFUC 1JRPA 4UD8A 3RJAA 3W8ZA 1VAOA 1MBBA 4PVHA 1UXYA 3FW9A 1WVFA 2AXRA 2WDWA 2GQTA 1SB3B 3PQBA 2I0KA 2Q85A 3S1FA 2R8DA 2VFSA 3D2DA 1ZXIC 1N5WC 3TSHA 2BVHA 1AHUA 5L6GA 1W1OA 2R2ZA 1QLUA 1WYGA 1E0YA 1VDVA 3C0PA 4PWBA 1T3QC 3EJDB 4BC9A 2O3GA 3POPA 2W55A 2Q4WA 2OAIA 2W3SA 3LAEA 1N62C 5FXEA 2UUVA 4OALA 1E8GA 3DEDA 3PM9A 4MLAA 1DIQA 2YVSA 4PYTA 4HG0A 5I1WA 1MBTA 3AM9A 4PWCA 3EUB3 5FXDA 3S1CA 4PVKA 4ZOHB 2PLSA 1ZR6A
chains in the Genus database with same CATH topology

3D2JA 3I99A 2GQUA 1DIIA 2MBRA 4EC3A 2P13A 1N63C 2VFVA 3LLBA 2VFRA 4BBYA 1DZNA 1E8HA 1JROA 3RJ8A 2W3RA 3JS8A 1W1LA 5AE1A 2Y4GA 2RK5A 4PVJA 1N61C 1N60C 5L6FA 5G5GB 3D2HA 3FW8A 3SR6B 5AE3A 2Y3RA 4PVEA 1F0XA 1W1QA 4ML8A 5HMRA 4JB1A 3KJMA 3HRDC 4XLOA 3TSJA 5HHZA 1W1KA 1W1JA 4JAYA 1E8FA 3B9JB 1W1SA 3W8WA 1HSKA 3W8XA 2EXRA 5ADZA 3NVWB 1FIQB 3S1DA 2Y08A 4PZFA 2QPMA 2IPIA 3NVZB 3GSYA 3DQ0A 2NQWA 1N5XA 1AHVA 2QKNA 2VFUA 1QLTA 3AMZA 2PLIA 2VFTA 4DNSA 5G5HB 2BVFA 1I19A 1W1RA 3TX1A 3ETRB 1WVEA 2E3TA 2BVGA 2P3HA 3FWAA 1FFVC 5I1VA 5K8EA 4O95A 1V97A 5AE2A 5HQXA 3NS1B 3VTEA 5FXPA 2Y3SA 2VAOA 3S1EA 5FXFA 1FO4A 3AN1A 4BC7A 5AWVA 1W1MA 2W54A 2UUUA 1AHZA 3NVYB 3BW7A 3NVVB 3NRZB 1RM6B 3HSUA 4BCAA 5D79A 2P4PA 3FW7A 1FFUC 1JRPA 4UD8A 3RJAA 3W8ZA 1VAOA 1MBBA 4PVHA 1UXYA 3FW9A 1WVFA 2AXRA 2WDWA 2GQTA 1SB3B 3PQBA 2I0KA 2Q85A 3S1FA 2R8DA 2VFSA 3D2DA 1ZXIC 1N5WC 3TSHA 2BVHA 1AHUA 5L6GA 1W1OA 2R2ZA 1QLUA 1WYGA 1E0YA 1VDVA 3C0PA 4PWBA 1T3QC 4BC9A 2O3GA 3POPA 2W55A 2Q4WA 2OAIA 2W3SA 3LAEA 1N62C 5FXEA 2UUVA 4OALA 1E8GA 3DEDA 3PM9A 4MLAA 1DIQA 2YVSA 4PYTA 4HG0A 5I1WA 1MBTA 3AM9A 4PWCA 3EUB3 5FXDA 3S1CA 4PVKA 4ZOHB 2PLSA 1ZR6A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3D2J A;  3I99 A;  2GQU A;  1DII A;  2MBR A;  4EC3 A;  2P13 A;  1N63 C;  2VFV A;  3LLB A;  2VFR A;  4BBY A;  1DZN A;  1E8H A;  1JRO A;  2W3R A;  3JS8 A;  1W1L A;  5AE1 A;  2RK5 A;  4PVJ A;  1N61 C;  1N60 C;  5G5G B;  3D2H A;  3FW8 A;  3SR6 B;  5AE3 A;  4PVE A;  1F0X A;  1W1Q A;  4ML8 A;  5HMR A;  4JB1 A;  3KJM A;  3HRD C;  4XLO A;  3TSJ A;  5HHZ A;  1W1K A;  1W1J A;  4JAY A;  1E8F A;  3B9J B;  1W1S A;  3W8W A;  1HSK A;  3W8X A;  2EXR A;  5ADZ A;  3NVW B;  1FIQ B;  3S1D A;  4PZF A;  2QPM A;  3NVZ B;  3GSY A;  3DQ0 A;  2NQW A;  1N5X A;  1AHV A;  2QKN A;  2VFU A;  1QLT A;  3AMZ A;  2PLI A;  2VFT A;  4DNS A;  5G5H B;  2BVF A;  1I19 A;  1W1R A;  3TX1 A;  3ETR B;  1WVE A;  2E3T A;  2BVG A;  2P3H A;  3FWA A;  1FFV C;  4O95 A;  1V97 A;  5AE2 A;  5HQX A;  3NS1 B;  3VTE A;  5FXP A;  2VAO A;  3S1E A;  5FXF A;  1FO4 A;  3AN1 A;  4BC7 A;  1W1M A;  2W54 A;  1AHZ A;  3NVY B;  3BW7 A;  3NVV B;  3NRZ B;  1RM6 B;  4BCA A;  5D79 A;  2P4P A;  3FW7 A;  1FFU C;  1JRP A;  4UD8 A;  3W8Z A;  1VAO A;  1MBB A;  4PVH A;  1UXY A;  3FW9 A;  1WVF A;  2AXR A;  2GQT A;  1SB3 B;  2I0K A;  2Q85 A;  3S1F A;  2R8D A;  2VFS A;  3D2D A;  1ZXI C;  1N5W C;  3TSH A;  2BVH A;  1AHU A;  1W1O A;  2R2Z A;  1QLU A;  1WYG A;  1E0Y A;  1VDV A;  3C0P A;  4PWB A;  1T3Q C;  4BC9 A;  2O3G A;  2W55 A;  2Q4W A;  2OAI A;  2W3S A;  3LAE A;  1N62 C;  5FXE A;  4OAL A;  1E8G A;  3DED A;  3PM9 A;  4MLA A;  1DIQ A;  2YVS A;  4PYT A;  4HG0 A;  1MBT A;  3AM9 A;  4PWC A;  3EUB 3;  5FXD A;  3S1C A;  4PVK A;  4ZOH B;  2PLS A;  1ZR6 A; 
#chains in the Genus database with same CATH topology
 3D2J A;  3I99 A;  2GQU A;  1DII A;  2MBR A;  4EC3 A;  2P13 A;  1N63 C;  2VFV A;  3LLB A;  2VFR A;  4BBY A;  1DZN A;  1E8H A;  1JRO A;  3RJ8 A;  3EJE B;  2W3R A;  3JS8 A;  1W1L A;  5AE1 A;  2Y4G A;  2RK5 A;  4PVJ A;  1N61 C;  1N60 C;  5L6F A;  5G5G B;  3D2H A;  3FW8 A;  3SR6 B;  5AE3 A;  2Y3R A;  4PVE A;  1F0X A;  1W1Q A;  4ML8 A;  5HMR A;  4JB1 A;  3KJM A;  3HRD C;  4XLO A;  3TSJ A;  5HHZ A;  1W1K A;  1W1J A;  4JAY A;  1E8F A;  3B9J B;  1W1S A;  3W8W A;  1HSK A;  3EJB B;  3W8X A;  2EXR A;  5ADZ A;  3NVW B;  1FIQ B;  3S1D A;  2Y08 A;  4PZF A;  2QPM A;  2IPI A;  3NVZ B;  3GSY A;  3DQ0 A;  2NQW A;  1N5X A;  1AHV A;  2QKN A;  2VFU A;  1QLT A;  3AMZ A;  2PLI A;  2VFT A;  4DNS A;  5G5H B;  2BVF A;  1I19 A;  1W1R A;  3TX1 A;  3ETR B;  1WVE A;  2E3T A;  2BVG A;  2P3H A;  3FWA A;  1FFV C;  5I1V A;  5K8E A;  4O95 A;  1V97 A;  5AE2 A;  5HQX A;  3NS1 B;  3VTE A;  5FXP A;  2Y3S A;  2VAO A;  3S1E A;  5FXF A;  1FO4 A;  3AN1 A;  4BC7 A;  5AWV A;  1W1M A;  2W54 A;  2UUU A;  1AHZ A;  3NVY B;  3BW7 A;  3NVV B;  3NRZ B;  1RM6 B;  3HSU A;  4BCA A;  5D79 A;  2P4P A;  3FW7 A;  1FFU C;  1JRP A;  4UD8 A;  3RJA A;  3W8Z A;  1VAO A;  1MBB A;  4PVH A;  1UXY A;  3FW9 A;  1WVF A;  2AXR A;  2WDW A;  2GQT A;  1SB3 B;  3PQB A;  2I0K A;  2Q85 A;  3S1F A;  2R8D A;  2VFS A;  3D2D A;  1ZXI C;  1N5W C;  3TSH A;  2BVH A;  1AHU A;  5L6G A;  1W1O A;  2R2Z A;  1QLU A;  1WYG A;  1E0Y A;  1VDV A;  3C0P A;  4PWB A;  1T3Q C;  3EJD B;  4BC9 A;  2O3G A;  3POP A;  2W55 A;  2Q4W A;  2OAI A;  2W3S A;  3LAE A;  1N62 C;  5FXE A;  2UUV A;  4OAL A;  1E8G A;  3DED A;  3PM9 A;  4MLA A;  1DIQ A;  2YVS A;  4PYT A;  4HG0 A;  5I1W A;  1MBT A;  3AM9 A;  4PWC A;  3EUB 3;  5FXD A;  3S1C A;  4PVK A;  4ZOH B;  2PLS A;  1ZR6 A; 
#chains in the Genus database with same CATH homology
 3D2J A;  3I99 A;  2GQU A;  1DII A;  2MBR A;  4EC3 A;  2P13 A;  1N63 C;  2VFV A;  3LLB A;  2VFR A;  4BBY A;  1DZN A;  1E8H A;  1JRO A;  3RJ8 A;  2W3R A;  3JS8 A;  1W1L A;  5AE1 A;  2Y4G A;  2RK5 A;  4PVJ A;  1N61 C;  1N60 C;  5L6F A;  5G5G B;  3D2H A;  3FW8 A;  3SR6 B;  5AE3 A;  2Y3R A;  4PVE A;  1F0X A;  1W1Q A;  4ML8 A;  5HMR A;  4JB1 A;  3KJM A;  3HRD C;  4XLO A;  3TSJ A;  5HHZ A;  1W1K A;  1W1J A;  4JAY A;  1E8F A;  3B9J B;  1W1S A;  3W8W A;  1HSK A;  3W8X A;  2EXR A;  5ADZ A;  3NVW B;  1FIQ B;  3S1D A;  2Y08 A;  4PZF A;  2QPM A;  2IPI A;  3NVZ B;  3GSY A;  3DQ0 A;  2NQW A;  1N5X A;  1AHV A;  2QKN A;  2VFU A;  1QLT A;  3AMZ A;  2PLI A;  2VFT A;  4DNS A;  5G5H B;  2BVF A;  1I19 A;  1W1R A;  3TX1 A;  3ETR B;  1WVE A;  2E3T A;  2BVG A;  2P3H A;  3FWA A;  1FFV C;  5I1V A;  5K8E A;  4O95 A;  1V97 A;  5AE2 A;  5HQX A;  3NS1 B;  3VTE A;  5FXP A;  2Y3S A;  2VAO A;  3S1E A;  5FXF A;  1FO4 A;  3AN1 A;  4BC7 A;  5AWV A;  1W1M A;  2W54 A;  2UUU A;  1AHZ A;  3NVY B;  3BW7 A;  3NVV B;  3NRZ B;  1RM6 B;  3HSU A;  4BCA A;  5D79 A;  2P4P A;  3FW7 A;  1FFU C;  1JRP A;  4UD8 A;  3RJA A;  3W8Z A;  1VAO A;  1MBB A;  4PVH A;  1UXY A;  3FW9 A;  1WVF A;  2AXR A;  2WDW A;  2GQT A;  1SB3 B;  3PQB A;  2I0K A;  2Q85 A;  3S1F A;  2R8D A;  2VFS A;  3D2D A;  1ZXI C;  1N5W C;  3TSH A;  2BVH A;  1AHU A;  5L6G A;  1W1O A;  2R2Z A;  1QLU A;  1WYG A;  1E0Y A;  1VDV A;  3C0P A;  4PWB A;  1T3Q C;  4BC9 A;  2O3G A;  3POP A;  2W55 A;  2Q4W A;  2OAI A;  2W3S A;  3LAE A;  1N62 C;  5FXE A;  2UUV A;  4OAL A;  1E8G A;  3DED A;  3PM9 A;  4MLA A;  1DIQ A;  2YVS A;  4PYT A;  4HG0 A;  5I1W A;  1MBT A;  3AM9 A;  4PWC A;  3EUB 3;  5FXD A;  3S1C A;  4PVK A;  4ZOH B;  2PLS A;  1ZR6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1W1SA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations