1WVE | Genus

Total Genus 195

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	195
sequence length	515
structure length	515
Chain Sequence	AVLPKGVTQGEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGIDLNNDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 515 atoms

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515 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Pseudomonas putida
publication title	p-Cresol Methylhydroxylase: Alteration of the Structure of the Flavoprotein Subunit upon Its Binding to the Cytochrome Subunit pubmed doi rcsb
molecule keywords	4-cresol dehydrogenase [hydroxylating] flavoprotein subunit
total genus	195
structure length	515
sequence length	515
chains with identical sequence	B
ec nomenclature	ec 1.17.9.1: 4-methylphenol dehydrogenase (hydroxylating).
pdb deposition date	2004-12-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF02913	FAD-oxidase_C	FAD linked oxidases, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.45.10	Mainly Alpha	Orthogonal Bundle	Vanillyl-alcohol Oxidase; Chain A, domain 4	Vanillyl-alcohol Oxidase; Chain A, domain 4	1wveA04
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	1wveA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	1wveA02
3.40.462.10	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	FAD-linked oxidases, C-terminal domain	1wveA03

4XLOA 5AE3A 2EXRA 5G5GB 1FFUC 1AHZA 3AN1A 3KJMA 3I99A 2P3HA 1N63C 2OAIA 5FXFA 2I0KA 2BVGA 1FO4A 2VFSA 3NVVB 1E0YA 5G5HB 1N5WC 3EUB3 3PM9A 3TX1A 1HSKA 3LAEA 3TSHA 4OALA 1E8FA 3S1FA 4EC3A 1QLTA 1WVFA 2YVSA 1N62C 5AE2A 5AE1A 2GQTA 1QLUA 3W8WA 3HRDC 1WVEA 4JB1A 4PYTA 5FXDA 1SB3B 3NS1B 2NQWA 3NRZB 1N60C 1DZNA 3BW7A 3SR6B 3TSJA 1W1SA 1N5XA 1W1JA 2AXRA 1W1OA 3GSYA 3AMZA 1W1LA 4PVKA 2BVHA 3FW9A 4BC7A 1AHVA 1E8GA 3FW7A 2RK5A 4BCAA 2W3SA 3NVWB 5D79A 1ZR6A 3W8XA 4UD8A 3D2HA 1DIIA 4DNSA 1T3QC 4PWCA 4PVHA 2P13A 1VDVA 1E8HA 3S1EA 5HMRA 3DEDA 2Q85A 1WYGA 1N61C 1ZXIC 3AM9A 4PZFA 2PLSA 2R8DA 3B9JB 2W3RA 5FXEA 4PVEA 1DIQA 3DQ0A 3S1CA 4BC9A 1JROA 2PLIA 2R2ZA 1VAOA 2W55A 3NVZB 3FW8A 5HHZA 2Q4WA 1V97A 1W1KA 2VFRA 1MBBA 1W1MA 2VAOA 2W54A 1MBTA 1W1RA 2QPMA 5HQXA 2MBRA 4HG0A 3VTEA 4ML8A 3S1DA 2VFUA 3ETRB 3FWAA 3NVYB 1AHUA 2O3GA 3LLBA 4BBYA 1W1QA 5ADZA 2QKNA 4MLAA 1UXYA 4O95A 1JRPA 2VFTA 5FXPA 2E3TA 2P4PA 1F0XA 4JAYA 3C0PA 4PWBA 1FIQB 1FFVC 1I19A 4PVJA 4ZOHB 2BVFA 3D2JA 3D2DA 3W8ZA 2GQUA 3JS8A 1RM6B 2VFVA
chains in the Genus database with same CATH superfamily

4XLOA 5AE3A 2EXRA 5G5GB 1FFUC 1AHZA 3AN1A 3KJMA 3I99A 2P3HA 1N63C 2OAIA 5FXFA 5I1VA 3HSUA 2I0KA 2BVGA 1FO4A 2VFSA 3NVVB 1E0YA 5G5HB 1N5WC 3EUB3 3PM9A 3TX1A 1HSKA 3LAEA 3TSHA 4OALA 1E8FA 3S1FA 4EC3A 1QLTA 1WVFA 2YVSA 1N62C 5AE2A 5AE1A 2GQTA 1QLUA 3W8WA 3HRDC 1WVEA 4JB1A 4PYTA 3EJBB 5FXDA 1SB3B 3NS1B 2NQWA 3NRZB 1N60C 1DZNA 3BW7A 3SR6B 3TSJA 1W1SA 1N5XA 1W1JA 2AXRA 1W1OA 3GSYA 3AMZA 1W1LA 4PVKA 2BVHA 3FW9A 2Y3RA 5AWVA 4BC7A 1AHVA 2UUUA 1E8GA 5I1WA 3FW7A 2RK5A 4BCAA 2W3SA 3NVWB 5D79A 1ZR6A 3W8XA 4UD8A 3D2HA 2Y3SA 1DIIA 4DNSA 2Y4GA 1T3QC 4PWCA 4PVHA 2P13A 3PQBA 1VDVA 1E8HA 3S1EA 5HMRA 3DEDA 2Q85A 1WYGA 3RJ8A 1N61C 1ZXIC 3AM9A 4PZFA 2PLSA 2R8DA 3B9JB 2W3RA 5FXEA 4PVEA 1DIQA 3DQ0A 2WDWA 3S1CA 4BC9A 3RJAA 1JROA 2PLIA 2R2ZA 1VAOA 2W55A 3NVZB 3FW8A 5HHZA 2UUVA 2Q4WA 1V97A 3EJEB 1W1KA 2VFRA 1MBBA 1W1MA 3POPA 2VAOA 2W54A 5L6GA 1MBTA 1W1RA 2QPMA 5HQXA 2MBRA 4HG0A 3VTEA 4ML8A 3S1DA 2VFUA 3ETRB 3FWAA 3NVYB 1AHUA 2O3GA 3LLBA 4BBYA 1W1QA 5L6FA 5ADZA 2QKNA 4MLAA 5K8EA 1UXYA 4O95A 1JRPA 2VFTA 5FXPA 2E3TA 2P4PA 1F0XA 4JAYA 3C0PA 4PWBA 1FIQB 1FFVC 1I19A 4PVJA 4ZOHB 2BVFA 3D2JA 3D2DA 3W8ZA 2GQUA 3JS8A 2Y08A 2IPIA 1RM6B 3EJDB 2VFVA
chains in the Genus database with same CATH topology

4XLOA 5AE3A 2EXRA 5G5GB 1FFUC 1AHZA 3AN1A 3KJMA 3I99A 2P3HA 1N63C 2OAIA 5FXFA 5I1VA 3HSUA 2I0KA 2BVGA 1FO4A 2VFSA 3NVVB 1E0YA 5G5HB 1N5WC 3EUB3 3PM9A 3TX1A 1HSKA 3LAEA 3TSHA 4OALA 1E8FA 3S1FA 4EC3A 1QLTA 1WVFA 2YVSA 1N62C 5AE2A 5AE1A 2GQTA 1QLUA 3W8WA 3HRDC 1WVEA 4JB1A 4PYTA 5FXDA 1SB3B 3NS1B 2NQWA 3NRZB 1N60C 1DZNA 3BW7A 3SR6B 3TSJA 1W1SA 1N5XA 1W1JA 2AXRA 1W1OA 3GSYA 3AMZA 1W1LA 4PVKA 2BVHA 3FW9A 2Y3RA 5AWVA 4BC7A 1AHVA 2UUUA 1E8GA 5I1WA 3FW7A 2RK5A 4BCAA 2W3SA 3NVWB 5D79A 1ZR6A 3W8XA 4UD8A 3D2HA 2Y3SA 1DIIA 4DNSA 2Y4GA 1T3QC 4PWCA 4PVHA 2P13A 3PQBA 1VDVA 1E8HA 3S1EA 5HMRA 3DEDA 2Q85A 1WYGA 3RJ8A 1N61C 1ZXIC 3AM9A 4PZFA 2PLSA 2R8DA 3B9JB 2W3RA 5FXEA 4PVEA 1DIQA 3DQ0A 2WDWA 3S1CA 4BC9A 3RJAA 1JROA 2PLIA 2R2ZA 1VAOA 2W55A 3NVZB 3FW8A 5HHZA 2UUVA 2Q4WA 1V97A 1W1KA 2VFRA 1MBBA 1W1MA 3POPA 2VAOA 2W54A 5L6GA 1MBTA 1W1RA 2QPMA 5HQXA 2MBRA 4HG0A 3VTEA 4ML8A 3S1DA 2VFUA 3ETRB 3FWAA 3NVYB 1AHUA 2O3GA 3LLBA 4BBYA 1W1QA 5L6FA 5ADZA 2QKNA 4MLAA 5K8EA 1UXYA 4O95A 1JRPA 2VFTA 5FXPA 2E3TA 2P4PA 1F0XA 4JAYA 3C0PA 4PWBA 1FIQB 1FFVC 1I19A 4PVJA 4ZOHB 2BVFA 3D2JA 3D2DA 3W8ZA 2GQUA 3JS8A 2Y08A 2IPIA 1RM6B 2VFVA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4XLO A;  5AE3 A;  2EXR A;  5G5G B;  1FFU C;  1AHZ A;  3AN1 A;  3KJM A;  3I99 A;  2P3H A;  1N63 C;  2OAI A;  5FXF A;  2I0K A;  2BVG A;  1FO4 A;  2VFS A;  3NVV B;  1E0Y A;  5G5H B;  1N5W C;  3EUB 3;  3PM9 A;  3TX1 A;  1HSK A;  3LAE A;  3TSH A;  4OAL A;  1E8F A;  3S1F A;  4EC3 A;  1QLT A;  1WVF A;  2YVS A;  1N62 C;  5AE2 A;  5AE1 A;  2GQT A;  1QLU A;  3W8W A;  3HRD C;  1WVE A;  4JB1 A;  4PYT A;  5FXD A;  1SB3 B;  3NS1 B;  2NQW A;  3NRZ B;  1N60 C;  1DZN A;  3BW7 A;  3SR6 B;  3TSJ A;  1W1S A;  1N5X A;  1W1J A;  2AXR A;  1W1O A;  3GSY A;  3AMZ A;  1W1L A;  4PVK A;  2BVH A;  3FW9 A;  4BC7 A;  1AHV A;  1E8G A;  3FW7 A;  2RK5 A;  4BCA A;  2W3S A;  3NVW B;  5D79 A;  1ZR6 A;  3W8X A;  4UD8 A;  3D2H A;  1DII A;  4DNS A;  1T3Q C;  4PWC A;  4PVH A;  2P13 A;  1VDV A;  1E8H A;  3S1E A;  5HMR A;  3DED A;  2Q85 A;  1WYG A;  1N61 C;  1ZXI C;  3AM9 A;  4PZF A;  2PLS A;  2R8D A;  3B9J B;  2W3R A;  5FXE A;  4PVE A;  1DIQ A;  3DQ0 A;  3S1C A;  4BC9 A;  1JRO A;  2PLI A;  2R2Z A;  1VAO A;  2W55 A;  3NVZ B;  3FW8 A;  5HHZ A;  2Q4W A;  1V97 A;  1W1K A;  2VFR A;  1MBB A;  1W1M A;  2VAO A;  2W54 A;  1MBT A;  1W1R A;  2QPM A;  5HQX A;  2MBR A;  4HG0 A;  3VTE A;  4ML8 A;  3S1D A;  2VFU A;  3ETR B;  3FWA A;  3NVY B;  1AHU A;  2O3G A;  3LLB A;  4BBY A;  1W1Q A;  5ADZ A;  2QKN A;  4MLA A;  1UXY A;  4O95 A;  1JRP A;  2VFT A;  5FXP A;  2E3T A;  2P4P A;  1F0X A;  4JAY A;  3C0P A;  4PWB A;  1FIQ B;  1FFV C;  1I19 A;  4PVJ A;  4ZOH B;  2BVF A;  3D2J A;  3D2D A;  3W8Z A;  2GQU A;  3JS8 A;  1RM6 B;  2VFV A; 
#chains in the Genus database with same CATH topology
 4XLO A;  5AE3 A;  2EXR A;  5G5G B;  1FFU C;  1AHZ A;  3AN1 A;  3KJM A;  3I99 A;  2P3H A;  1N63 C;  2OAI A;  5FXF A;  5I1V A;  3HSU A;  2I0K A;  2BVG A;  1FO4 A;  2VFS A;  3NVV B;  1E0Y A;  5G5H B;  1N5W C;  3EUB 3;  3PM9 A;  3TX1 A;  1HSK A;  3LAE A;  3TSH A;  4OAL A;  1E8F A;  3S1F A;  4EC3 A;  1QLT A;  1WVF A;  2YVS A;  1N62 C;  5AE2 A;  5AE1 A;  2GQT A;  1QLU A;  3W8W A;  3HRD C;  1WVE A;  4JB1 A;  4PYT A;  3EJB B;  5FXD A;  1SB3 B;  3NS1 B;  2NQW A;  3NRZ B;  1N60 C;  1DZN A;  3BW7 A;  3SR6 B;  3TSJ A;  1W1S A;  1N5X A;  1W1J A;  2AXR A;  1W1O A;  3GSY A;  3AMZ A;  1W1L A;  4PVK A;  2BVH A;  3FW9 A;  2Y3R A;  5AWV A;  4BC7 A;  1AHV A;  2UUU A;  1E8G A;  5I1W A;  3FW7 A;  2RK5 A;  4BCA A;  2W3S A;  3NVW B;  5D79 A;  1ZR6 A;  3W8X A;  4UD8 A;  3D2H A;  2Y3S A;  1DII A;  4DNS A;  2Y4G A;  1T3Q C;  4PWC A;  4PVH A;  2P13 A;  3PQB A;  1VDV A;  1E8H A;  3S1E A;  5HMR A;  3DED A;  2Q85 A;  1WYG A;  3RJ8 A;  1N61 C;  1ZXI C;  3AM9 A;  4PZF A;  2PLS A;  2R8D A;  3B9J B;  2W3R A;  5FXE A;  4PVE A;  1DIQ A;  3DQ0 A;  2WDW A;  3S1C A;  4BC9 A;  3RJA A;  1JRO A;  2PLI A;  2R2Z A;  1VAO A;  2W55 A;  3NVZ B;  3FW8 A;  5HHZ A;  2UUV A;  2Q4W A;  1V97 A;  3EJE B;  1W1K A;  2VFR A;  1MBB A;  1W1M A;  3POP A;  2VAO A;  2W54 A;  5L6G A;  1MBT A;  1W1R A;  2QPM A;  5HQX A;  2MBR A;  4HG0 A;  3VTE A;  4ML8 A;  3S1D A;  2VFU A;  3ETR B;  3FWA A;  3NVY B;  1AHU A;  2O3G A;  3LLB A;  4BBY A;  1W1Q A;  5L6F A;  5ADZ A;  2QKN A;  4MLA A;  5K8E A;  1UXY A;  4O95 A;  1JRP A;  2VFT A;  5FXP A;  2E3T A;  2P4P A;  1F0X A;  4JAY A;  3C0P A;  4PWB A;  1FIQ B;  1FFV C;  1I19 A;  4PVJ A;  4ZOH B;  2BVF A;  3D2J A;  3D2D A;  3W8Z A;  2GQU A;  3JS8 A;  2Y08 A;  2IPI A;  1RM6 B;  3EJD B;  2VFV A; 
#chains in the Genus database with same CATH homology
 4XLO A;  5AE3 A;  2EXR A;  5G5G B;  1FFU C;  1AHZ A;  3AN1 A;  3KJM A;  3I99 A;  2P3H A;  1N63 C;  2OAI A;  5FXF A;  5I1V A;  3HSU A;  2I0K A;  2BVG A;  1FO4 A;  2VFS A;  3NVV B;  1E0Y A;  5G5H B;  1N5W C;  3EUB 3;  3PM9 A;  3TX1 A;  1HSK A;  3LAE A;  3TSH A;  4OAL A;  1E8F A;  3S1F A;  4EC3 A;  1QLT A;  1WVF A;  2YVS A;  1N62 C;  5AE2 A;  5AE1 A;  2GQT A;  1QLU A;  3W8W A;  3HRD C;  1WVE A;  4JB1 A;  4PYT A;  5FXD A;  1SB3 B;  3NS1 B;  2NQW A;  3NRZ B;  1N60 C;  1DZN A;  3BW7 A;  3SR6 B;  3TSJ A;  1W1S A;  1N5X A;  1W1J A;  2AXR A;  1W1O A;  3GSY A;  3AMZ A;  1W1L A;  4PVK A;  2BVH A;  3FW9 A;  2Y3R A;  5AWV A;  4BC7 A;  1AHV A;  2UUU A;  1E8G A;  5I1W A;  3FW7 A;  2RK5 A;  4BCA A;  2W3S A;  3NVW B;  5D79 A;  1ZR6 A;  3W8X A;  4UD8 A;  3D2H A;  2Y3S A;  1DII A;  4DNS A;  2Y4G A;  1T3Q C;  4PWC A;  4PVH A;  2P13 A;  3PQB A;  1VDV A;  1E8H A;  3S1E A;  5HMR A;  3DED A;  2Q85 A;  1WYG A;  3RJ8 A;  1N61 C;  1ZXI C;  3AM9 A;  4PZF A;  2PLS A;  2R8D A;  3B9J B;  2W3R A;  5FXE A;  4PVE A;  1DIQ A;  3DQ0 A;  2WDW A;  3S1C A;  4BC9 A;  3RJA A;  1JRO A;  2PLI A;  2R2Z A;  1VAO A;  2W55 A;  3NVZ B;  3FW8 A;  5HHZ A;  2UUV A;  2Q4W A;  1V97 A;  1W1K A;  2VFR A;  1MBB A;  1W1M A;  3POP A;  2VAO A;  2W54 A;  5L6G A;  1MBT A;  1W1R A;  2QPM A;  5HQX A;  2MBR A;  4HG0 A;  3VTE A;  4ML8 A;  3S1D A;  2VFU A;  3ETR B;  3FWA A;  3NVY B;  1AHU A;  2O3G A;  3LLB A;  4BBY A;  1W1Q A;  5L6F A;  5ADZ A;  2QKN A;  4MLA A;  5K8E A;  1UXY A;  4O95 A;  1JRP A;  2VFT A;  5FXP A;  2E3T A;  2P4P A;  1F0X A;  4JAY A;  3C0P A;  4PWB A;  1FIQ B;  1FFV C;  1I19 A;  4PVJ A;  4ZOH B;  2BVF A;  3D2J A;  3D2D A;  3W8Z A;  2GQU A;  3JS8 A;  2Y08 A;  2IPI A;  1RM6 B;  2VFV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WVEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations