2BVF | Genus

Total Genus 145

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	145
sequence length	453
structure length	453
Chain Sequence	KLATPLSIQGEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVGHLGGLDIAERDIARLRGLGRTVSDSIAVRSYDEVVALNAEVGSFEDGMSNLWIDREIAMPNARFAEAIAGNLDKFVSEPASGGSVKLEIEGMPFGNPKRTPARHRDAMGVLALAEWSGAAPGSEKYPELARELDAALLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNIDPE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfcb516be3d686e3379c552/pdb.gz

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidase
source organism	Arthrobacter nicotinovorans
publication title	Crystal Structure of 6-Hydroxy-D-Nicotine Oxidase from Arthrobacter Nicotinovorans. pubmed doi rcsb
molecule keywords	6-HYDROXY-D-NICOTINE OXIDASE
total genus	145
structure length	453
sequence length	453
chains with identical sequence	B
ec nomenclature	ec 1.5.3.6: (R)-6-hydroxynicotine oxidase.
pdb deposition date	2005-06-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF08031	BBE	Berberine and berberine like

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	2bvfA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	2bvfA02
3.40.462.20	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	Vanillyl-alcohol Oxidase; Chain A, domain 3	2bvfA03

3JS8A 4BBYA 2I0KA 2AXRA 2QKNA 2NQWA 1AHUA 3AMZA 1WYGA 5I1VA 1VAOA 2O3GA 1W1MA 4PWBA 3ETRB 1W1LA 5G5GB 2VAOA 1N60C 1DZNA 3PM9A 4EC3A 3B9JB 2R8DA 4PVHA 5K8EA 4PYTA 1W1QA 3LLBA 4JB1A 1MBTA 1JROA 3TSJA 4JAYA 1AHZA 1WVFA 1FIQB 5FXDA 5HMRA 2WDWA 2BVFA 1W1KA 1FFVC 1W1RA 1W1JA 1DIIA 1FFUC 4O95A 1E0YA 1W1OA 5AE1A 2P4PA 2GQTA 4PVJA 1ZR6A 1SB3B 1JRPA 2EXRA 2Q85A 2Y4GA 4ZOHB 3BW7A 2PLSA 3VTEA 1E8FA 2QPMA 3NVZB 5FXFA 2Y08A 2Y3SA 1E8HA 4OALA 4PZFA 3NVYB 3HSUA 5I1WA 3FW7A 3TSHA 3DQ0A 2MBRA 1F0XA 2Y3RA 4PVKA 2VFTA 3AN1A 3S1FA 5AE2A 2R2ZA 1QLUA 2W3RA 3PQBA 5G5HB 2W3SA 5L6GA 3FWAA 2BVGA 3W8ZA 4BC9A 3RJAA 3TX1A 2VFUA 1V97A 3NS1B 3NVVB 3S1CA 3NVWB 1ZXIC 3POPA 3HRDC 4PWCA 2VFRA 5HHZA 3SR6B 1QLTA 3FW8A 3AM9A 1N5WC 5L6FA 4DNSA 1WVEA 4HG0A 3W8WA 1HSKA 1N62C 1N61C 2VFVA 2IPIA 1RM6B 5FXEA 2VFSA 2W54A 4BCAA 2PLIA 3LAEA 4BC7A 3D2HA 2RK5A 1N63C 2E3TA 5AE3A 4XLOA 2P13A 1AHVA 3FW9A 3S1EA 4MLAA 3S1DA 3DEDA 4UD8A 3RJ8A 1T3QC 5HQXA 2YVSA 5FXPA 1N5XA 1I19A 1VDVA 3GSYA 3W8XA 3I99A 3KJMA 2Q4WA 1DIQA 2P3HA 1FO4A 3C0PA 3EUB3 2BVHA 3D2JA 5ADZA 1UXYA 2W55A 2GQUA 3NRZB 5D79A 4ML8A 5AWVA 1W1SA 3D2DA 2OAIA 1E8GA 1MBBA 4PVEA
chains in the Genus database with same CATH superfamily

3JS8A 4BBYA 2I0KA 2AXRA 2QKNA 2NQWA 1AHUA 3AMZA 1WYGA 5I1VA 1VAOA 2UUUA 2O3GA 1W1MA 4PWBA 3ETRB 1W1LA 5G5GB 2VAOA 1N60C 1DZNA 3PM9A 4EC3A 3B9JB 2R8DA 4PVHA 2UUVA 5K8EA 4PYTA 1W1QA 3LLBA 4JB1A 1MBTA 1JROA 3TSJA 4JAYA 1AHZA 1WVFA 1FIQB 5FXDA 5HMRA 2WDWA 3EJEB 2BVFA 1W1KA 1FFVC 1W1RA 1W1JA 1DIIA 1FFUC 4O95A 1E0YA 1W1OA 5AE1A 2P4PA 2GQTA 4PVJA 1ZR6A 1SB3B 1JRPA 2EXRA 2Q85A 2Y4GA 4ZOHB 3BW7A 2PLSA 3VTEA 1E8FA 2QPMA 3NVZB 5FXFA 2Y08A 2Y3SA 1E8HA 4OALA 3NVYB 4PZFA 3HSUA 5I1WA 3FW7A 3TSHA 3DQ0A 2MBRA 1F0XA 2Y3RA 4PVKA 2VFTA 3AN1A 3S1FA 5AE2A 2R2ZA 1QLUA 2W3RA 3PQBA 5G5HB 2W3SA 5L6GA 3FWAA 2BVGA 3W8ZA 4BC9A 3RJAA 3TX1A 2VFUA 1V97A 3NS1B 3NVVB 3S1CA 3NVWB 1ZXIC 3POPA 3HRDC 4PWCA 3EJDB 2VFRA 5HHZA 3SR6B 3EJBB 1QLTA 3FW8A 3AM9A 1N5WC 5L6FA 4DNSA 1WVEA 4HG0A 3W8WA 1HSKA 1N62C 1N61C 2VFVA 2IPIA 1RM6B 5FXEA 2VFSA 2W54A 4BCAA 2PLIA 3LAEA 4BC7A 3D2HA 2RK5A 1N63C 2E3TA 5AE3A 4XLOA 2P13A 1AHVA 3FW9A 3S1EA 4MLAA 3S1DA 3DEDA 4UD8A 3RJ8A 1T3QC 5HQXA 2YVSA 5FXPA 1N5XA 1I19A 1VDVA 3GSYA 3W8XA 3I99A 3KJMA 2Q4WA 1DIQA 2P3HA 1FO4A 3C0PA 3EUB3 2BVHA 3D2JA 5ADZA 1UXYA 2W55A 2GQUA 3NRZB 5D79A 4ML8A 5AWVA 1W1SA 3D2DA 2OAIA 1E8GA 1MBBA 4PVEA
chains in the Genus database with same CATH topology

3JS8A 4BBYA 2I0KA 2AXRA 2QKNA 2NQWA 1AHUA 3AMZA 1WYGA 5I1VA 1VAOA 2UUUA 2O3GA 1W1MA 4PWBA 3ETRB 1W1LA 5G5GB 2VAOA 1N60C 1DZNA 3PM9A 4EC3A 3B9JB 2R8DA 4PVHA 2UUVA 5K8EA 4PYTA 1W1QA 3LLBA 4JB1A 1MBTA 1JROA 3TSJA 4JAYA 1AHZA 1WVFA 1FIQB 5FXDA 5HMRA 2WDWA 2BVFA 1W1KA 1FFVC 1W1RA 1W1JA 1DIIA 1FFUC 4O95A 1E0YA 1W1OA 5AE1A 2P4PA 2GQTA 4PVJA 1ZR6A 1SB3B 1JRPA 2EXRA 2Q85A 2Y4GA 4ZOHB 3BW7A 2PLSA 3VTEA 1E8FA 2QPMA 3NVZB 5FXFA 2Y08A 2Y3SA 1E8HA 4OALA 4PZFA 3NVYB 3HSUA 5I1WA 3FW7A 3TSHA 3DQ0A 2MBRA 1F0XA 2Y3RA 4PVKA 2VFTA 3AN1A 3S1FA 5AE2A 2R2ZA 1QLUA 2W3RA 3PQBA 5G5HB 2W3SA 5L6GA 3FWAA 2BVGA 3W8ZA 4BC9A 3RJAA 3TX1A 2VFUA 1V97A 3NS1B 3NVVB 3S1CA 3NVWB 1ZXIC 3POPA 3HRDC 4PWCA 2VFRA 5HHZA 3SR6B 1QLTA 3FW8A 3AM9A 1N5WC 5L6FA 4DNSA 1WVEA 4HG0A 3W8WA 1HSKA 1N62C 1N61C 2VFVA 2IPIA 1RM6B 5FXEA 2VFSA 2W54A 4BCAA 2PLIA 3LAEA 4BC7A 3D2HA 2RK5A 1N63C 2E3TA 5AE3A 4XLOA 2P13A 1AHVA 3FW9A 3S1EA 4MLAA 3S1DA 3DEDA 4UD8A 3RJ8A 1T3QC 5HQXA 2YVSA 5FXPA 1N5XA 1I19A 1VDVA 3GSYA 3W8XA 3I99A 3KJMA 2Q4WA 1DIQA 2P3HA 1FO4A 3C0PA 3EUB3 2BVHA 3D2JA 5ADZA 1UXYA 2W55A 2GQUA 3NRZB 5D79A 4ML8A 5AWVA 1W1SA 3D2DA 2OAIA 1E8GA 1MBBA 4PVEA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3JS8 A;  4BBY A;  2I0K A;  2AXR A;  2QKN A;  2NQW A;  1AHU A;  3AMZ A;  1WYG A;  5I1V A;  1VAO A;  2O3G A;  1W1M A;  4PWB A;  3ETR B;  1W1L A;  5G5G B;  2VAO A;  1N60 C;  1DZN A;  3PM9 A;  4EC3 A;  3B9J B;  2R8D A;  4PVH A;  5K8E A;  4PYT A;  1W1Q A;  3LLB A;  4JB1 A;  1MBT A;  1JRO A;  3TSJ A;  4JAY A;  1AHZ A;  1WVF A;  1FIQ B;  5FXD A;  5HMR A;  2WDW A;  2BVF A;  1W1K A;  1FFV C;  1W1R A;  1W1J A;  1DII A;  1FFU C;  4O95 A;  1E0Y A;  1W1O A;  5AE1 A;  2P4P A;  2GQT A;  4PVJ A;  1ZR6 A;  1SB3 B;  1JRP A;  2EXR A;  2Q85 A;  2Y4G A;  4ZOH B;  3BW7 A;  2PLS A;  3VTE A;  1E8F A;  2QPM A;  3NVZ B;  5FXF A;  2Y08 A;  2Y3S A;  1E8H A;  4OAL A;  4PZF A;  3NVY B;  3HSU A;  5I1W A;  3FW7 A;  3TSH A;  3DQ0 A;  2MBR A;  1F0X A;  2Y3R A;  4PVK A;  2VFT A;  3AN1 A;  3S1F A;  5AE2 A;  2R2Z A;  1QLU A;  2W3R A;  3PQB A;  5G5H B;  2W3S A;  5L6G A;  3FWA A;  2BVG A;  3W8Z A;  4BC9 A;  3RJA A;  3TX1 A;  2VFU A;  1V97 A;  3NS1 B;  3NVV B;  3S1C A;  3NVW B;  1ZXI C;  3POP A;  3HRD C;  4PWC A;  2VFR A;  5HHZ A;  3SR6 B;  1QLT A;  3FW8 A;  3AM9 A;  1N5W C;  5L6F A;  4DNS A;  1WVE A;  4HG0 A;  3W8W A;  1HSK A;  1N62 C;  1N61 C;  2VFV A;  2IPI A;  1RM6 B;  5FXE A;  2VFS A;  2W54 A;  4BCA A;  2PLI A;  3LAE A;  4BC7 A;  3D2H A;  2RK5 A;  1N63 C;  2E3T A;  5AE3 A;  4XLO A;  2P13 A;  1AHV A;  3FW9 A;  3S1E A;  4MLA A;  3S1D A;  3DED A;  4UD8 A;  3RJ8 A;  1T3Q C;  5HQX A;  2YVS A;  5FXP A;  1N5X A;  1I19 A;  1VDV A;  3GSY A;  3W8X A;  3I99 A;  3KJM A;  2Q4W A;  1DIQ A;  2P3H A;  1FO4 A;  3C0P A;  3EUB 3;  2BVH A;  3D2J A;  5ADZ A;  1UXY A;  2W55 A;  2GQU A;  3NRZ B;  5D79 A;  4ML8 A;  5AWV A;  1W1S A;  3D2D A;  2OAI A;  1E8G A;  1MBB A;  4PVE A; 
#chains in the Genus database with same CATH topology
 3JS8 A;  4BBY A;  2I0K A;  2AXR A;  2QKN A;  2NQW A;  1AHU A;  3AMZ A;  1WYG A;  5I1V A;  1VAO A;  2UUU A;  2O3G A;  1W1M A;  4PWB A;  3ETR B;  1W1L A;  5G5G B;  2VAO A;  1N60 C;  1DZN A;  3PM9 A;  4EC3 A;  3B9J B;  2R8D A;  4PVH A;  2UUV A;  5K8E A;  4PYT A;  1W1Q A;  3LLB A;  4JB1 A;  1MBT A;  1JRO A;  3TSJ A;  4JAY A;  1AHZ A;  1WVF A;  1FIQ B;  5FXD A;  5HMR A;  2WDW A;  3EJE B;  2BVF A;  1W1K A;  1FFV C;  1W1R A;  1W1J A;  1DII A;  1FFU C;  4O95 A;  1E0Y A;  1W1O A;  5AE1 A;  2P4P A;  2GQT A;  4PVJ A;  1ZR6 A;  1SB3 B;  1JRP A;  2EXR A;  2Q85 A;  2Y4G A;  4ZOH B;  3BW7 A;  2PLS A;  3VTE A;  1E8F A;  2QPM A;  3NVZ B;  5FXF A;  2Y08 A;  2Y3S A;  1E8H A;  4OAL A;  3NVY B;  4PZF A;  3HSU A;  5I1W A;  3FW7 A;  3TSH A;  3DQ0 A;  2MBR A;  1F0X A;  2Y3R A;  4PVK A;  2VFT A;  3AN1 A;  3S1F A;  5AE2 A;  2R2Z A;  1QLU A;  2W3R A;  3PQB A;  5G5H B;  2W3S A;  5L6G A;  3FWA A;  2BVG A;  3W8Z A;  4BC9 A;  3RJA A;  3TX1 A;  2VFU A;  1V97 A;  3NS1 B;  3NVV B;  3S1C A;  3NVW B;  1ZXI C;  3POP A;  3HRD C;  4PWC A;  3EJD B;  2VFR A;  5HHZ A;  3SR6 B;  3EJB B;  1QLT A;  3FW8 A;  3AM9 A;  1N5W C;  5L6F A;  4DNS A;  1WVE A;  4HG0 A;  3W8W A;  1HSK A;  1N62 C;  1N61 C;  2VFV A;  2IPI A;  1RM6 B;  5FXE A;  2VFS A;  2W54 A;  4BCA A;  2PLI A;  3LAE A;  4BC7 A;  3D2H A;  2RK5 A;  1N63 C;  2E3T A;  5AE3 A;  4XLO A;  2P13 A;  1AHV A;  3FW9 A;  3S1E A;  4MLA A;  3S1D A;  3DED A;  4UD8 A;  3RJ8 A;  1T3Q C;  5HQX A;  2YVS A;  5FXP A;  1N5X A;  1I19 A;  1VDV A;  3GSY A;  3W8X A;  3I99 A;  3KJM A;  2Q4W A;  1DIQ A;  2P3H A;  1FO4 A;  3C0P A;  3EUB 3;  2BVH A;  3D2J A;  5ADZ A;  1UXY A;  2W55 A;  2GQU A;  3NRZ B;  5D79 A;  4ML8 A;  5AWV A;  1W1S A;  3D2D A;  2OAI A;  1E8G A;  1MBB A;  4PVE A; 
#chains in the Genus database with same CATH homology
 3JS8 A;  4BBY A;  2I0K A;  2AXR A;  2QKN A;  2NQW A;  1AHU A;  3AMZ A;  1WYG A;  5I1V A;  1VAO A;  2UUU A;  2O3G A;  1W1M A;  4PWB A;  3ETR B;  1W1L A;  5G5G B;  2VAO A;  1N60 C;  1DZN A;  3PM9 A;  4EC3 A;  3B9J B;  2R8D A;  4PVH A;  2UUV A;  5K8E A;  4PYT A;  1W1Q A;  3LLB A;  4JB1 A;  1MBT A;  1JRO A;  3TSJ A;  4JAY A;  1AHZ A;  1WVF A;  1FIQ B;  5FXD A;  5HMR A;  2WDW A;  2BVF A;  1W1K A;  1FFV C;  1W1R A;  1W1J A;  1DII A;  1FFU C;  4O95 A;  1E0Y A;  1W1O A;  5AE1 A;  2P4P A;  2GQT A;  4PVJ A;  1ZR6 A;  1SB3 B;  1JRP A;  2EXR A;  2Q85 A;  2Y4G A;  4ZOH B;  3BW7 A;  2PLS A;  3VTE A;  1E8F A;  2QPM A;  3NVZ B;  5FXF A;  2Y08 A;  2Y3S A;  1E8H A;  4OAL A;  4PZF A;  3NVY B;  3HSU A;  5I1W A;  3FW7 A;  3TSH A;  3DQ0 A;  2MBR A;  1F0X A;  2Y3R A;  4PVK A;  2VFT A;  3AN1 A;  3S1F A;  5AE2 A;  2R2Z A;  1QLU A;  2W3R A;  3PQB A;  5G5H B;  2W3S A;  5L6G A;  3FWA A;  2BVG A;  3W8Z A;  4BC9 A;  3RJA A;  3TX1 A;  2VFU A;  1V97 A;  3NS1 B;  3NVV B;  3S1C A;  3NVW B;  1ZXI C;  3POP A;  3HRD C;  4PWC A;  2VFR A;  5HHZ A;  3SR6 B;  1QLT A;  3FW8 A;  3AM9 A;  1N5W C;  5L6F A;  4DNS A;  1WVE A;  4HG0 A;  3W8W A;  1HSK A;  1N62 C;  1N61 C;  2VFV A;  2IPI A;  1RM6 B;  5FXE A;  2VFS A;  2W54 A;  4BCA A;  2PLI A;  3LAE A;  4BC7 A;  3D2H A;  2RK5 A;  1N63 C;  2E3T A;  5AE3 A;  4XLO A;  2P13 A;  1AHV A;  3FW9 A;  3S1E A;  4MLA A;  3S1D A;  3DED A;  4UD8 A;  3RJ8 A;  1T3Q C;  5HQX A;  2YVS A;  5FXP A;  1N5X A;  1I19 A;  1VDV A;  3GSY A;  3W8X A;  3I99 A;  3KJM A;  2Q4W A;  1DIQ A;  2P3H A;  1FO4 A;  3C0P A;  3EUB 3;  2BVH A;  3D2J A;  5ADZ A;  1UXY A;  2W55 A;  2GQU A;  3NRZ B;  5D79 A;  4ML8 A;  5AWV A;  1W1S A;  3D2D A;  2OAI A;  1E8G A;  1MBB A;  4PVE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BVFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations