2NQWA

Structure of the transporter associated domain from pg_0272, a cbs domain protein from porphyromonas gingivalis
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
87
structure length
87
Chain Sequence
LPFKVLGDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPFRFQVTQMDKRRIIEIKIFPFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the transporter associated domain from PG_0272, a CBS domain protein from Porphyromonas gingivalis.
rcsb
molecule tags Structural genomics, unknown function
source organism Porphyromonas gingivalis
molecule keywords CBS domain protein
total genus 20
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2006-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2nqwA00
5FXFA 1N61C 5G5HB 4OALA 1MBBA 2VFTA 1E0YA 3LAEA 1N5WC 2VAOA 1V97A 1W1QA 2VFUA 4JAYA 4PYTA 3S1DA 2P13A 3B9JB 3W8XA 1W1SA 2BVFA 2PLSA 5HHZA 1QLUA 3W8ZA 3AM9A 2RK5A 2R2ZA 1UXYA 2W54A 2VFRA 4BC7A 3NVWB 3S1EA 1FIQB 3KJMA 2YVSA 3BW7A 3NS1B 1JRPA 2GQUA 1WVFA 5FXEA 1HSKA 3AMZA 5ADZA 3PM9A 3C0PA 3S1FA 1MBTA 2R8DA 1FFVC 2MBRA 1N63C 4O95A 2AXRA 3NVVB 2VFVA 1W1JA 2VFSA 3SR6B 1WVEA 2W3RA 5FXDA 4XLOA 1E8GA 1FFUC 1W1LA 4JB1A 3S1CA 3JS8A 1E8HA 3W8WA 1N60C 2Q85A 1VDVA 3DQ0A 1DIQA 1FO4A 1F0XA 2QKNA 1E8FA 2BVGA 3NVYB 2W55A 1QLTA 2W3SA 2EXRA 2NQWA 3LLBA 4HG0A 4ML8A 3I99A 3EUB3 5HMRA 1ZR6A 1W1OA 3ETRB 1AHUA 5AE3A 1N62C 3AN1A 1VAOA 2P3HA 1W1KA 2E3TA 2QPMA 1ZXIC 3DEDA 1SB3B 3HRDC 2P4PA 4BC9A 1AHVA 2I0KA 1AHZA 2Q4WA 1N5XA 1W1RA 5AE2A 2GQTA 3TX1A 5AE1A 1DZNA 1WYGA 4MLAA 2O3GA 1RM6B 2BVHA 1JROA 1T3QC 1W1MA 2PLIA 1DIIA 4BCAA 5G5GB 5FXPA 5HQXA 2OAIA 4ZOHB 3NVZB 1I19A 4BBYA 3NRZB
chains in the Genus database with same CATH superfamily
5FXFA 5I1VA 1N61C 5G5HB 4OALA 1MBBA 2VFTA 1E0YA 3LAEA 4PVEA 1N5WC 2VAOA 1V97A 1W1QA 2VFUA 4JAYA 4PYTA 2Y3SA 2P13A 3B9JB 3S1DA 3RJ8A 3W8XA 1W1SA 2BVFA 2PLSA 3D2JA 3FW8A 5HHZA 1QLUA 3W8ZA 3AM9A 2RK5A 2Y4GA 3FW9A 4PWCA 2R2ZA 1UXYA 2W54A 2VFRA 4BC7A 3GSYA 2Y3RA 3NVWB 3S1EA 1FIQB 3KJMA 2YVSA 3BW7A 3NS1B 1JRPA 2GQUA 1WVFA 5FXEA 1HSKA 3FWAA 3AMZA 3VTEA 5ADZA 3PM9A 3C0PA 3PQBA 1MBTA 3S1FA 2R8DA 3FW7A 5I1WA 1FFVC 2MBRA 1N63C 2IPIA 4O95A 3D2DA 2Y08A 2AXRA 3NVVB 2VFVA 1W1JA 2VFSA 5L6FA 3SR6B 1WVEA 2W3RA 5FXDA 4XLOA 1E8GA 1FFUC 1W1LA 4PVHA 2UUVA 4JB1A 3S1CA 3JS8A 1E8HA 3W8WA 1N60C 2Q85A 1VDVA 3DQ0A 1DIQA 3TSHA 1FO4A 1F0XA 2QKNA 1E8FA 3POPA 2BVGA 3NVYB 2W55A 1QLTA 2UUUA 2W3SA 3TSJA 2EXRA 5D79A 2NQWA 3LLBA 4UD8A 4HG0A 4ML8A 3I99A 3EUB3 5HMRA 1ZR6A 1W1OA 3ETRB 1AHUA 5AE3A 1N62C 3AN1A 1VAOA 2P3HA 1W1KA 2E3TA 3D2HA 2QPMA 1ZXIC 3DEDA 1SB3B 4PWBA 3HRDC 2P4PA 4PVJA 5L6GA 4BC9A 4PZFA 1AHVA 2I0KA 1AHZA 2Q4WA 1N5XA 1W1RA 5AE2A 2GQTA 5AWVA 3TX1A 5AE1A 1DZNA 1WYGA 4MLAA 2O3GA 3HSUA 1RM6B 2BVHA 1JROA 1T3QC 3RJAA 1W1MA 2PLIA 1DIIA 4PVKA 5G5GB 4BCAA 2WDWA 5FXPA 5HQXA 2OAIA 5K8EA 4ZOHB 3NVZB 1I19A 4EC3A 4DNSA 4BBYA 3NRZB
chains in the Genus database with same CATH topology
5FXFA 5I1VA 1N61C 5G5HB 4OALA 1MBBA 2VFTA 1E0YA 3LAEA 4PVEA 1N5WC 2VAOA 1V97A 1W1QA 2VFUA 4JAYA 4PYTA 2Y3SA 2P13A 3B9JB 3S1DA 3RJ8A 3W8XA 1W1SA 2BVFA 2PLSA 3D2JA 3FW8A 5HHZA 1QLUA 3W8ZA 3AM9A 2RK5A 2Y4GA 3FW9A 4PWCA 2R2ZA 1UXYA 2W54A 2VFRA 4BC7A 3GSYA 2Y3RA 3NVWB 3S1EA 1FIQB 3KJMA 2YVSA 3BW7A 3NS1B 1JRPA 2GQUA 1WVFA 5FXEA 1HSKA 3FWAA 3AMZA 3VTEA 5ADZA 3PM9A 3C0PA 3PQBA 1MBTA 3S1FA 2R8DA 3FW7A 5I1WA 1FFVC 2MBRA 1N63C 2IPIA 4O95A 3D2DA 2Y08A 2AXRA 3NVVB 2VFVA 1W1JA 2VFSA 5L6FA 3SR6B 1WVEA 2W3RA 5FXDA 4XLOA 1E8GA 1FFUC 1W1LA 4PVHA 2UUVA 4JB1A 3S1CA 3JS8A 1E8HA 3W8WA 1N60C 2Q85A 1VDVA 3DQ0A 1DIQA 3TSHA 1FO4A 1F0XA 2QKNA 1E8FA 3POPA 2BVGA 3NVYB 2W55A 1QLTA 2UUUA 2W3SA 3TSJA 2EXRA 5D79A 2NQWA 3LLBA 4UD8A 4HG0A 4ML8A 3I99A 3EUB3 5HMRA 1ZR6A 1W1OA 3ETRB 1AHUA 5AE3A 1N62C 3AN1A 1VAOA 2P3HA 1W1KA 2E3TA 3D2HA 2QPMA 1ZXIC 3DEDA 1SB3B 4PWBA 3HRDC 2P4PA 4PVJA 5L6GA 4BC9A 4PZFA 1AHVA 2I0KA 1AHZA 2Q4WA 1N5XA 1W1RA 5AE2A 2GQTA 5AWVA 3TX1A 5AE1A 1DZNA 1WYGA 4MLAA 2O3GA 3HSUA 1RM6B 2BVHA 1JROA 1T3QC 3RJAA 1W1MA 2PLIA 1DIIA 4PVKA 5G5GB 4BCAA 2WDWA 5FXPA 5HQXA 2OAIA 5K8EA 4ZOHB 3NVZB 1I19A 4EC3A 4DNSA 4BBYA 3NRZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FXF A;  1N61 C;  5G5H B;  4OAL A;  1MBB A;  2VFT A;  1E0Y A;  3LAE A;  1N5W C;  2VAO A;  1V97 A;  1W1Q A;  2VFU A;  4JAY A;  4PYT A;  3S1D A;  2P13 A;  3B9J B;  3W8X A;  1W1S A;  2BVF A;  2PLS A;  5HHZ A;  1QLU A;  3W8Z A;  3AM9 A;  2RK5 A;  2R2Z A;  1UXY A;  2W54 A;  2VFR A;  4BC7 A;  3NVW B;  3S1E A;  1FIQ B;  3KJM A;  2YVS A;  3BW7 A;  3NS1 B;  1JRP A;  2GQU A;  1WVF A;  5FXE A;  1HSK A;  3AMZ A;  5ADZ A;  3PM9 A;  3C0P A;  3S1F A;  1MBT A;  2R8D A;  1FFV C;  2MBR A;  1N63 C;  4O95 A;  2AXR A;  3NVV B;  2VFV A;  1W1J A;  2VFS A;  3SR6 B;  1WVE A;  2W3R A;  5FXD A;  4XLO A;  1E8G A;  1FFU C;  1W1L A;  4JB1 A;  3S1C A;  3JS8 A;  1E8H A;  3W8W A;  1N60 C;  2Q85 A;  1VDV A;  3DQ0 A;  1DIQ A;  1FO4 A;  1F0X A;  2QKN A;  1E8F A;  2BVG A;  3NVY B;  2W55 A;  1QLT A;  2W3S A;  2EXR A;  2NQW A;  3LLB A;  4HG0 A;  4ML8 A;  3I99 A;  3EUB 3;  5HMR A;  1ZR6 A;  1W1O A;  3ETR B;  1AHU A;  5AE3 A;  1N62 C;  3AN1 A;  1VAO A;  2P3H A;  1W1K A;  2E3T A;  2QPM A;  1ZXI C;  3DED A;  1SB3 B;  3HRD C;  2P4P A;  4BC9 A;  1AHV A;  2I0K A;  1AHZ A;  2Q4W A;  1N5X A;  1W1R A;  5AE2 A;  2GQT A;  3TX1 A;  5AE1 A;  1DZN A;  1WYG A;  4MLA A;  2O3G A;  1RM6 B;  2BVH A;  1JRO A;  1T3Q C;  1W1M A;  2PLI A;  1DII A;  4BCA A;  5G5G B;  5FXP A;  5HQX A;  2OAI A;  4ZOH B;  3NVZ B;  1I19 A;  4BBY A;  3NRZ B; 
#chains in the Genus database with same CATH topology
 5FXF A;  5I1V A;  1N61 C;  5G5H B;  4OAL A;  1MBB A;  2VFT A;  1E0Y A;  3LAE A;  4PVE A;  1N5W C;  2VAO A;  1V97 A;  1W1Q A;  2VFU A;  4JAY A;  4PYT A;  2Y3S A;  2P13 A;  3B9J B;  3S1D A;  3RJ8 A;  3W8X A;  1W1S A;  2BVF A;  2PLS A;  3D2J A;  3FW8 A;  5HHZ A;  1QLU A;  3W8Z A;  3AM9 A;  2RK5 A;  2Y4G A;  3FW9 A;  4PWC A;  2R2Z A;  1UXY A;  2W54 A;  2VFR A;  4BC7 A;  3GSY A;  2Y3R A;  3NVW B;  3S1E A;  1FIQ B;  3KJM A;  2YVS A;  3BW7 A;  3NS1 B;  1JRP A;  2GQU A;  1WVF A;  5FXE A;  1HSK A;  3FWA A;  3AMZ A;  3VTE A;  5ADZ A;  3PM9 A;  3C0P A;  3PQB A;  1MBT A;  3S1F A;  2R8D A;  3FW7 A;  5I1W A;  1FFV C;  2MBR A;  1N63 C;  2IPI A;  4O95 A;  3D2D A;  2Y08 A;  2AXR A;  3NVV B;  2VFV A;  1W1J A;  2VFS A;  5L6F A;  3SR6 B;  1WVE A;  2W3R A;  5FXD A;  4XLO A;  1E8G A;  1FFU C;  1W1L A;  4PVH A;  2UUV A;  4JB1 A;  3S1C A;  3JS8 A;  1E8H A;  3W8W A;  1N60 C;  2Q85 A;  1VDV A;  3DQ0 A;  1DIQ A;  3TSH A;  1FO4 A;  1F0X A;  2QKN A;  1E8F A;  3POP A;  2BVG A;  3NVY B;  2W55 A;  1QLT A;  2UUU A;  2W3S A;  3TSJ A;  2EXR A;  5D79 A;  2NQW A;  3LLB A;  4UD8 A;  4HG0 A;  4ML8 A;  3I99 A;  3EUB 3;  5HMR A;  1ZR6 A;  1W1O A;  3ETR B;  1AHU A;  5AE3 A;  1N62 C;  3AN1 A;  1VAO A;  2P3H A;  1W1K A;  2E3T A;  3D2H A;  2QPM A;  1ZXI C;  3DED A;  1SB3 B;  4PWB A;  3HRD C;  2P4P A;  4PVJ A;  5L6G A;  4BC9 A;  4PZF A;  1AHV A;  2I0K A;  1AHZ A;  2Q4W A;  1N5X A;  1W1R A;  5AE2 A;  2GQT A;  5AWV A;  3TX1 A;  5AE1 A;  1DZN A;  1WYG A;  4MLA A;  2O3G A;  3HSU A;  1RM6 B;  2BVH A;  1JRO A;  1T3Q C;  3RJA A;  1W1M A;  2PLI A;  1DII A;  4PVK A;  5G5G B;  4BCA A;  2WDW A;  5FXP A;  5HQX A;  2OAI A;  5K8E A;  4ZOH B;  3NVZ B;  1I19 A;  4EC3 A;  4DNS A;  4BBY A;  3NRZ B; 
#chains in the Genus database with same CATH homology
 5FXF A;  5I1V A;  1N61 C;  5G5H B;  4OAL A;  1MBB A;  2VFT A;  1E0Y A;  3LAE A;  4PVE A;  1N5W C;  2VAO A;  1V97 A;  1W1Q A;  2VFU A;  4JAY A;  4PYT A;  2Y3S A;  2P13 A;  3B9J B;  3S1D A;  3RJ8 A;  3W8X A;  1W1S A;  2BVF A;  2PLS A;  3D2J A;  3FW8 A;  5HHZ A;  1QLU A;  3W8Z A;  3AM9 A;  2RK5 A;  2Y4G A;  3FW9 A;  4PWC A;  2R2Z A;  1UXY A;  2W54 A;  2VFR A;  4BC7 A;  3GSY A;  2Y3R A;  3NVW B;  3S1E A;  1FIQ B;  3KJM A;  2YVS A;  3BW7 A;  3NS1 B;  1JRP A;  2GQU A;  1WVF A;  5FXE A;  1HSK A;  3FWA A;  3AMZ A;  3VTE A;  5ADZ A;  3PM9 A;  3C0P A;  3PQB A;  1MBT A;  3S1F A;  2R8D A;  3FW7 A;  5I1W A;  1FFV C;  2MBR A;  1N63 C;  2IPI A;  4O95 A;  3D2D A;  2Y08 A;  2AXR A;  3NVV B;  2VFV A;  1W1J A;  2VFS A;  5L6F A;  3SR6 B;  1WVE A;  2W3R A;  5FXD A;  4XLO A;  1E8G A;  1FFU C;  1W1L A;  4PVH A;  2UUV A;  4JB1 A;  3S1C A;  3JS8 A;  1E8H A;  3W8W A;  1N60 C;  2Q85 A;  1VDV A;  3DQ0 A;  1DIQ A;  3TSH A;  1FO4 A;  1F0X A;  2QKN A;  1E8F A;  3POP A;  2BVG A;  3NVY B;  2W55 A;  1QLT A;  2UUU A;  2W3S A;  3TSJ A;  2EXR A;  5D79 A;  2NQW A;  3LLB A;  4UD8 A;  4HG0 A;  4ML8 A;  3I99 A;  3EUB 3;  5HMR A;  1ZR6 A;  1W1O A;  3ETR B;  1AHU A;  5AE3 A;  1N62 C;  3AN1 A;  1VAO A;  2P3H A;  1W1K A;  2E3T A;  3D2H A;  2QPM A;  1ZXI C;  3DED A;  1SB3 B;  4PWB A;  3HRD C;  2P4P A;  4PVJ A;  5L6G A;  4BC9 A;  4PZF A;  1AHV A;  2I0K A;  1AHZ A;  2Q4W A;  1N5X A;  1W1R A;  5AE2 A;  2GQT A;  5AWV A;  3TX1 A;  5AE1 A;  1DZN A;  1WYG A;  4MLA A;  2O3G A;  3HSU A;  1RM6 B;  2BVH A;  1JRO A;  1T3Q C;  3RJA A;  1W1M A;  2PLI A;  1DII A;  4PVK A;  5G5G B;  4BCA A;  2WDW A;  5FXP A;  5HQX A;  2OAI A;  5K8E A;  4ZOH B;  3NVZ B;  1I19 A;  4EC3 A;  4DNS A;  4BBY A;  3NRZ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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