2OAIA

The structure of transporter associated domain corc_hlyc from a xylella fastidiosa temecula1 hemolysin.
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
87
structure length
79
Chain Sequence
EDALMVTREDGSFLIDGTLPIEELREVLGANNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDGARIDLLLQRLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin.
rcsb
molecule tags Toxin
source organism Xylella fastidiosa
molecule keywords Hemolysin
total genus 15
structure length 79
sequence length 87
ec nomenclature
pdb deposition date 2006-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2oaiA00
1SB3B 1DZNA 1E8FA 2NQWA 1E8HA 2YVSA 3EUB3 1F0XA 3PM9A 1QLTA 1HSKA 4OALA 5AE3A 2MBRA 5AE1A 1MBTA 3DQ0A 3NVWB 4BBYA 2VAOA 2QKNA 3NRZB 2PLSA 3I99A 5FXDA 1DIIA 1VAOA 4JAYA 1E0YA 3NVVB 1W1RA 2GQTA 1WVFA 2VFTA 2PLIA 1WVEA 2VFRA 1QLUA 1N62C 4O95A 4BCAA 2P3HA 3AMZA 2R8DA 1ZR6A 2VFVA 1FFUC 3S1EA 1WYGA 1MBBA 3S1FA 2Q4WA 1W1MA 2BVHA 3S1DA 2AXRA 1JROA 3AN1A 3DEDA 1N5WC 2BVGA 1VDVA 3ETRB 1N5XA 4MLAA 3SR6B 1I19A 1AHZA 1W1QA 5G5GB 3LLBA 1UXYA 5FXFA 2I0KA 4ZOHB 3W8ZA 5AE2A 2VFUA 3NVZB 3BW7A 2VFSA 2W55A 3AM9A 5HMRA 2BVFA 3NS1B 5HQXA 1FIQB 3NVYB 4BC7A 2W54A 5G5HB 1ZXIC 3B9JB 2EXRA 2W3SA 1FFVC 1W1KA 3S1CA 3W8XA 5FXPA 3HRDC 4JB1A 1W1SA 2P4PA 3JS8A 1T3QC 3W8WA 5HHZA 1FO4A 1W1LA 1AHVA 1N60C 2W3RA 1RM6B 1N61C 4HG0A 5ADZA 1DIQA 5FXEA 2Q85A 4BC9A 2QPMA 3TX1A 2OAIA 4XLOA 1AHUA 1JRPA 1W1JA 3C0PA 4ML8A 3KJMA 2P13A 1V97A 2R2ZA 3LAEA 2E3TA 2RK5A 2GQUA 4PYTA 1N63C 1E8GA 2O3GA 1W1OA
chains in the Genus database with same CATH superfamily
1SB3B 1DZNA 1E8FA 2NQWA 3D2DA 1E8HA 2YVSA 2UUVA 3EUB3 1F0XA 3PM9A 2UUUA 1QLTA 1HSKA 4OALA 5AE3A 2MBRA 3PQBA 1MBTA 2Y3SA 5AE1A 3DQ0A 3NVWB 4BBYA 2VAOA 4PVEA 2QKNA 3FW8A 3NRZB 2PLSA 3I99A 3FWAA 5FXDA 1DIIA 1VAOA 4JAYA 1E0YA 3NVVB 3TSJA 1W1RA 2GQTA 1WVFA 2VFTA 2PLIA 1WVEA 2VFRA 1QLUA 1N62C 4O95A 4BCAA 3GSYA 2P3HA 4UD8A 3AMZA 2R8DA 5I1VA 1ZR6A 2VFVA 1FFUC 4PZFA 3S1EA 3FW7A 5L6FA 1WYGA 4PVKA 1MBBA 3S1FA 2Q4WA 1W1MA 2BVHA 5K8EA 3S1DA 2AXRA 1JROA 3AN1A 3DEDA 1N5WC 2BVGA 1VDVA 3ETRB 2Y3RA 1N5XA 5I1WA 4MLAA 3SR6B 1I19A 1AHZA 1W1QA 5G5GB 3LLBA 2Y08A 1UXYA 4EC3A 3HSUA 5FXFA 2I0KA 4ZOHB 4PWBA 3W8ZA 5AE2A 2VFUA 2WDWA 3FW9A 3NVZB 3BW7A 2IPIA 2VFSA 2W55A 3AM9A 5HMRA 2BVFA 3NS1B 5HQXA 1FIQB 4DNSA 3NVYB 4BC7A 2W54A 3RJ8A 5G5HB 1ZXIC 3B9JB 2EXRA 2W3SA 1FFVC 1W1KA 3S1CA 3W8XA 5FXPA 3HRDC 4JB1A 4PWCA 1W1SA 2P4PA 3JS8A 3D2JA 1T3QC 5D79A 3W8WA 3RJAA 5HHZA 1FO4A 1W1LA 1AHVA 5AWVA 1N60C 4PVJA 3POPA 2W3RA 1RM6B 1N61C 3TSHA 4HG0A 5ADZA 1DIQA 5FXEA 2Q85A 4BC9A 3D2HA 2Y4GA 4PVHA 2QPMA 3TX1A 2OAIA 4XLOA 5L6GA 1AHUA 1JRPA 1W1JA 3C0PA 4ML8A 3KJMA 3VTEA 2P13A 1V97A 2R2ZA 3LAEA 2E3TA 2RK5A 2GQUA 4PYTA 1N63C 1E8GA 2O3GA 1W1OA
chains in the Genus database with same CATH topology
1SB3B 1DZNA 1E8FA 2NQWA 3D2DA 1E8HA 2YVSA 2UUVA 3EUB3 1F0XA 3PM9A 2UUUA 1QLTA 1HSKA 4OALA 5AE3A 2MBRA 3PQBA 1MBTA 2Y3SA 5AE1A 3DQ0A 3NVWB 4BBYA 2VAOA 4PVEA 2QKNA 3FW8A 3NRZB 2PLSA 3I99A 3FWAA 5FXDA 1DIIA 1VAOA 4JAYA 1E0YA 3NVVB 3TSJA 1W1RA 2GQTA 1WVFA 2VFTA 2PLIA 1WVEA 2VFRA 1QLUA 1N62C 4O95A 4BCAA 3GSYA 2P3HA 4UD8A 3AMZA 2R8DA 5I1VA 1ZR6A 2VFVA 1FFUC 4PZFA 3S1EA 3FW7A 5L6FA 1WYGA 4PVKA 1MBBA 3S1FA 2Q4WA 1W1MA 2BVHA 5K8EA 3S1DA 2AXRA 1JROA 3AN1A 3DEDA 1N5WC 2BVGA 1VDVA 3ETRB 2Y3RA 1N5XA 5I1WA 4MLAA 3SR6B 1I19A 1AHZA 1W1QA 5G5GB 3LLBA 2Y08A 1UXYA 4EC3A 3HSUA 5FXFA 2I0KA 4ZOHB 4PWBA 3W8ZA 5AE2A 2VFUA 2WDWA 3FW9A 3NVZB 3BW7A 2IPIA 2VFSA 2W55A 3AM9A 5HMRA 2BVFA 3NS1B 5HQXA 1FIQB 4DNSA 3NVYB 4BC7A 2W54A 3RJ8A 5G5HB 1ZXIC 3B9JB 2EXRA 2W3SA 1FFVC 1W1KA 3S1CA 3W8XA 5FXPA 3HRDC 4JB1A 4PWCA 1W1SA 2P4PA 3JS8A 3D2JA 1T3QC 5D79A 3W8WA 3RJAA 5HHZA 1FO4A 1W1LA 1AHVA 5AWVA 1N60C 4PVJA 3POPA 2W3RA 1RM6B 1N61C 3TSHA 4HG0A 5ADZA 1DIQA 5FXEA 2Q85A 4BC9A 3D2HA 2Y4GA 4PVHA 2QPMA 3TX1A 2OAIA 4XLOA 5L6GA 1AHUA 1JRPA 1W1JA 3C0PA 4ML8A 3KJMA 3VTEA 2P13A 1V97A 2R2ZA 3LAEA 2E3TA 2RK5A 2GQUA 4PYTA 1N63C 1E8GA 2O3GA 1W1OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SB3 B;  1DZN A;  1E8F A;  2NQW A;  1E8H A;  2YVS A;  3EUB 3;  1F0X A;  3PM9 A;  1QLT A;  1HSK A;  4OAL A;  5AE3 A;  2MBR A;  5AE1 A;  1MBT A;  3DQ0 A;  3NVW B;  4BBY A;  2VAO A;  2QKN A;  3NRZ B;  2PLS A;  3I99 A;  5FXD A;  1DII A;  1VAO A;  4JAY A;  1E0Y A;  3NVV B;  1W1R A;  2GQT A;  1WVF A;  2VFT A;  2PLI A;  1WVE A;  2VFR A;  1QLU A;  1N62 C;  4O95 A;  4BCA A;  2P3H A;  3AMZ A;  2R8D A;  1ZR6 A;  2VFV A;  1FFU C;  3S1E A;  1WYG A;  1MBB A;  3S1F A;  2Q4W A;  1W1M A;  2BVH A;  3S1D A;  2AXR A;  1JRO A;  3AN1 A;  3DED A;  1N5W C;  2BVG A;  1VDV A;  3ETR B;  1N5X A;  4MLA A;  3SR6 B;  1I19 A;  1AHZ A;  1W1Q A;  5G5G B;  3LLB A;  1UXY A;  5FXF A;  2I0K A;  4ZOH B;  3W8Z A;  5AE2 A;  2VFU A;  3NVZ B;  3BW7 A;  2VFS A;  2W55 A;  3AM9 A;  5HMR A;  2BVF A;  3NS1 B;  5HQX A;  1FIQ B;  3NVY B;  4BC7 A;  2W54 A;  5G5H B;  1ZXI C;  3B9J B;  2EXR A;  2W3S A;  1FFV C;  1W1K A;  3S1C A;  3W8X A;  5FXP A;  3HRD C;  4JB1 A;  1W1S A;  2P4P A;  3JS8 A;  1T3Q C;  3W8W A;  5HHZ A;  1FO4 A;  1W1L A;  1AHV A;  1N60 C;  2W3R A;  1RM6 B;  1N61 C;  4HG0 A;  5ADZ A;  1DIQ A;  5FXE A;  2Q85 A;  4BC9 A;  2QPM A;  3TX1 A;  2OAI A;  4XLO A;  1AHU A;  1JRP A;  1W1J A;  3C0P A;  4ML8 A;  3KJM A;  2P13 A;  1V97 A;  2R2Z A;  3LAE A;  2E3T A;  2RK5 A;  2GQU A;  4PYT A;  1N63 C;  1E8G A;  2O3G A;  1W1O A; 
#chains in the Genus database with same CATH topology
 1SB3 B;  1DZN A;  1E8F A;  2NQW A;  3D2D A;  1E8H A;  2YVS A;  2UUV A;  3EUB 3;  1F0X A;  3PM9 A;  2UUU A;  1QLT A;  1HSK A;  4OAL A;  5AE3 A;  2MBR A;  3PQB A;  1MBT A;  2Y3S A;  5AE1 A;  3DQ0 A;  3NVW B;  4BBY A;  2VAO A;  4PVE A;  2QKN A;  3FW8 A;  3NRZ B;  2PLS A;  3I99 A;  3FWA A;  5FXD A;  1DII A;  1VAO A;  4JAY A;  1E0Y A;  3NVV B;  3TSJ A;  1W1R A;  2GQT A;  1WVF A;  2VFT A;  2PLI A;  1WVE A;  2VFR A;  1QLU A;  1N62 C;  4O95 A;  4BCA A;  3GSY A;  2P3H A;  4UD8 A;  3AMZ A;  2R8D A;  5I1V A;  1ZR6 A;  2VFV A;  1FFU C;  4PZF A;  3S1E A;  3FW7 A;  5L6F A;  1WYG A;  4PVK A;  1MBB A;  3S1F A;  2Q4W A;  1W1M A;  2BVH A;  5K8E A;  3S1D A;  2AXR A;  1JRO A;  3AN1 A;  3DED A;  1N5W C;  2BVG A;  1VDV A;  3ETR B;  2Y3R A;  1N5X A;  5I1W A;  4MLA A;  3SR6 B;  1I19 A;  1AHZ A;  1W1Q A;  5G5G B;  3LLB A;  2Y08 A;  1UXY A;  4EC3 A;  3HSU A;  5FXF A;  2I0K A;  4ZOH B;  4PWB A;  3W8Z A;  5AE2 A;  2VFU A;  2WDW A;  3FW9 A;  3NVZ B;  3BW7 A;  2IPI A;  2VFS A;  2W55 A;  3AM9 A;  5HMR A;  2BVF A;  3NS1 B;  5HQX A;  1FIQ B;  4DNS A;  3NVY B;  4BC7 A;  2W54 A;  3RJ8 A;  5G5H B;  1ZXI C;  3B9J B;  2EXR A;  2W3S A;  1FFV C;  1W1K A;  3S1C A;  3W8X A;  5FXP A;  3HRD C;  4JB1 A;  4PWC A;  1W1S A;  2P4P A;  3JS8 A;  3D2J A;  1T3Q C;  5D79 A;  3W8W A;  3RJA A;  5HHZ A;  1FO4 A;  1W1L A;  1AHV A;  5AWV A;  1N60 C;  4PVJ A;  3POP A;  2W3R A;  1RM6 B;  1N61 C;  3TSH A;  4HG0 A;  5ADZ A;  1DIQ A;  5FXE A;  2Q85 A;  4BC9 A;  3D2H A;  2Y4G A;  4PVH A;  2QPM A;  3TX1 A;  2OAI A;  4XLO A;  5L6G A;  1AHU A;  1JRP A;  1W1J A;  3C0P A;  4ML8 A;  3KJM A;  3VTE A;  2P13 A;  1V97 A;  2R2Z A;  3LAE A;  2E3T A;  2RK5 A;  2GQU A;  4PYT A;  1N63 C;  1E8G A;  2O3G A;  1W1O A; 
#chains in the Genus database with same CATH homology
 1SB3 B;  1DZN A;  1E8F A;  2NQW A;  3D2D A;  1E8H A;  2YVS A;  2UUV A;  3EUB 3;  1F0X A;  3PM9 A;  2UUU A;  1QLT A;  1HSK A;  4OAL A;  5AE3 A;  2MBR A;  3PQB A;  1MBT A;  2Y3S A;  5AE1 A;  3DQ0 A;  3NVW B;  4BBY A;  2VAO A;  4PVE A;  2QKN A;  3FW8 A;  3NRZ B;  2PLS A;  3I99 A;  3FWA A;  5FXD A;  1DII A;  1VAO A;  4JAY A;  1E0Y A;  3NVV B;  3TSJ A;  1W1R A;  2GQT A;  1WVF A;  2VFT A;  2PLI A;  1WVE A;  2VFR A;  1QLU A;  1N62 C;  4O95 A;  4BCA A;  3GSY A;  2P3H A;  4UD8 A;  3AMZ A;  2R8D A;  5I1V A;  1ZR6 A;  2VFV A;  1FFU C;  4PZF A;  3S1E A;  3FW7 A;  5L6F A;  1WYG A;  4PVK A;  1MBB A;  3S1F A;  2Q4W A;  1W1M A;  2BVH A;  5K8E A;  3S1D A;  2AXR A;  1JRO A;  3AN1 A;  3DED A;  1N5W C;  2BVG A;  1VDV A;  3ETR B;  2Y3R A;  1N5X A;  5I1W A;  4MLA A;  3SR6 B;  1I19 A;  1AHZ A;  1W1Q A;  5G5G B;  3LLB A;  2Y08 A;  1UXY A;  4EC3 A;  3HSU A;  5FXF A;  2I0K A;  4ZOH B;  4PWB A;  3W8Z A;  5AE2 A;  2VFU A;  2WDW A;  3FW9 A;  3NVZ B;  3BW7 A;  2IPI A;  2VFS A;  2W55 A;  3AM9 A;  5HMR A;  2BVF A;  3NS1 B;  5HQX A;  1FIQ B;  4DNS A;  3NVY B;  4BC7 A;  2W54 A;  3RJ8 A;  5G5H B;  1ZXI C;  3B9J B;  2EXR A;  2W3S A;  1FFV C;  1W1K A;  3S1C A;  3W8X A;  5FXP A;  3HRD C;  4JB1 A;  4PWC A;  1W1S A;  2P4P A;  3JS8 A;  3D2J A;  1T3Q C;  5D79 A;  3W8W A;  3RJA A;  5HHZ A;  1FO4 A;  1W1L A;  1AHV A;  5AWV A;  1N60 C;  4PVJ A;  3POP A;  2W3R A;  1RM6 B;  1N61 C;  3TSH A;  4HG0 A;  5ADZ A;  1DIQ A;  5FXE A;  2Q85 A;  4BC9 A;  3D2H A;  2Y4G A;  4PVH A;  2QPM A;  3TX1 A;  2OAI A;  4XLO A;  5L6G A;  1AHU A;  1JRP A;  1W1J A;  3C0P A;  4ML8 A;  3KJM A;  3VTE A;  2P13 A;  1V97 A;  2R2Z A;  3LAE A;  2E3T A;  2RK5 A;  2GQU A;  4PYT A;  1N63 C;  1E8G A;  2O3G A;  1W1O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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