2OAIA

The structure of transporter associated domain corc_hlyc from a xylella fastidiosa temecula1 hemolysin.
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
87
structure length
79
Chain Sequence
EDALMVTREDGSFLIDGTLPIEELREVLGANNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDGARIDLLLQRLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin.
rcsb
molecule tags Toxin
source organism Xylella fastidiosa
molecule keywords Hemolysin
total genus 15
structure length 79
sequence length 87
ec nomenclature
pdb deposition date 2006-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2oaiA00
2MBRA 4BC9A 1E8FA 2W3RA 3HRDC 5G5GB 3BW7A 3AM9A 1FIQB 1HSKA 3AMZA 3JS8A 5FXEA 1ZXIC 5FXPA 1W1LA 2GQUA 4O95A 1T3QC 1FO4A 1N63C 3NVVB 3S1EA 2PLIA 1AHVA 4XLOA 2NQWA 1N5XA 1E0YA 3KJMA 2VFRA 2VFSA 1QLUA 1W1OA 3B9JB 2O3GA 1DIIA 1WYGA 4ZOHB 1F0XA 1WVEA 2P4PA 2VFTA 1SB3B 3EUB3 5HMRA 2P13A 3NVYB 3LAEA 1W1SA 2W3SA 3AN1A 2AXRA 1W1JA 3S1CA 1FFVC 1JRPA 4BC7A 1JROA 4MLAA 1W1KA 1AHUA 2QKNA 2W55A 3PM9A 2R8DA 3W8ZA 1ZR6A 2QPMA 2BVGA 5HHZA 3NVWB 1AHZA 4JAYA 1N61C 1W1QA 1V97A 2VFUA 3S1DA 2R2ZA 1N62C 3NRZB 2PLSA 4BCAA 1E8HA 2BVHA 3I99A 2P3HA 1QLTA 1FFUC 1N60C 1WVFA 1UXYA 5HQXA 5AE3A 4ML8A 1DZNA 2E3TA 3DEDA 2BVFA 3DQ0A 3TX1A 1VDVA 3LLBA 4HG0A 3NS1B 5AE1A 1E8GA 2VAOA 5FXDA 2VFVA 2W54A 4OALA 3SR6B 2GQTA 1W1MA 4PYTA 1N5WC 1MBTA 2Q85A 1W1RA 1RM6B 3C0PA 2I0KA 2EXRA 1VAOA 3W8XA 5AE2A 3S1FA 3W8WA 5ADZA 1MBBA 2YVSA 5G5HB 5FXFA 4JB1A 1I19A 1DIQA 3ETRB 2Q4WA 4BBYA 2OAIA 3NVZB 2RK5A
chains in the Genus database with same CATH superfamily
2MBRA 4BC9A 3POPA 1E8FA 2W3RA 3HRDC 5G5GB 3BW7A 3AM9A 4PZFA 1FIQB 1HSKA 3AMZA 3TSHA 5L6GA 3JS8A 5FXEA 3D2DA 3FW8A 1ZXIC 4PWCA 5FXPA 1W1LA 2GQUA 3D2JA 4O95A 1T3QC 1FO4A 1N63C 3NVVB 2Y3RA 3S1EA 3TSJA 2PLIA 1AHVA 3FWAA 4XLOA 2UUUA 2NQWA 1N5XA 1E0YA 3KJMA 2VFRA 2VFSA 1QLUA 1W1OA 3FW9A 3B9JB 2O3GA 1DIIA 1WYGA 4PVEA 4ZOHB 1F0XA 1WVEA 3D2HA 2P4PA 2VFTA 1SB3B 3EUB3 4PWBA 5HMRA 2P13A 4PVKA 3NVYB 3LAEA 1W1SA 2W3SA 3AN1A 2AXRA 1W1JA 2WDWA 3S1CA 1FFVC 1JRPA 4PVHA 4BC7A 1JROA 4MLAA 1W1KA 1AHUA 2QKNA 4UD8A 2W55A 3PM9A 2R8DA 2Y3SA 3W8ZA 1ZR6A 2QPMA 2BVGA 5HHZA 3NVWB 1AHZA 4JAYA 1N61C 1W1QA 1V97A 2VFUA 5D79A 3S1DA 2R2ZA 1N62C 3NRZB 2PLSA 4BCAA 1E8HA 5AWVA 3RJ8A 2BVHA 3I99A 4PVJA 2P3HA 1QLTA 5I1VA 1FFUC 1N60C 1WVFA 3HSUA 1UXYA 5HQXA 5AE3A 4ML8A 1DZNA 2UUVA 3PQBA 2E3TA 3DEDA 2BVFA 3DQ0A 3TX1A 2Y08A 1VDVA 3LLBA 4HG0A 3NS1B 5AE1A 2Y4GA 1E8GA 2VAOA 5FXDA 2VFVA 2W54A 4DNSA 4OALA 3SR6B 2GQTA 1W1MA 4PYTA 1N5WC 1MBTA 3VTEA 5I1WA 2Q85A 3GSYA 1W1RA 1RM6B 3C0PA 3RJAA 2IPIA 4EC3A 2I0KA 2EXRA 1VAOA 3FW7A 5L6FA 3W8XA 5AE2A 3S1FA 3W8WA 5ADZA 1MBBA 2YVSA 5K8EA 5G5HB 5FXFA 4JB1A 1I19A 1DIQA 3ETRB 2Q4WA 4BBYA 2OAIA 3NVZB 2RK5A
chains in the Genus database with same CATH topology
2MBRA 4BC9A 3POPA 1E8FA 2W3RA 3HRDC 5G5GB 3BW7A 3AM9A 4PZFA 1FIQB 1HSKA 3AMZA 3TSHA 5L6GA 3JS8A 5FXEA 3D2DA 3FW8A 1ZXIC 4PWCA 5FXPA 1W1LA 2GQUA 3D2JA 4O95A 1T3QC 1FO4A 1N63C 3NVVB 2Y3RA 3S1EA 3TSJA 2PLIA 1AHVA 3FWAA 4XLOA 2UUUA 2NQWA 1N5XA 1E0YA 3KJMA 2VFRA 2VFSA 1QLUA 1W1OA 3FW9A 3B9JB 2O3GA 1DIIA 1WYGA 4PVEA 4ZOHB 1F0XA 1WVEA 3D2HA 2P4PA 2VFTA 1SB3B 3EUB3 4PWBA 5HMRA 2P13A 4PVKA 3NVYB 3LAEA 1W1SA 2W3SA 3AN1A 2AXRA 1W1JA 2WDWA 3S1CA 1FFVC 1JRPA 4PVHA 4BC7A 1JROA 4MLAA 1W1KA 1AHUA 2QKNA 4UD8A 2W55A 3PM9A 2R8DA 2Y3SA 3W8ZA 1ZR6A 2QPMA 2BVGA 5HHZA 3NVWB 1AHZA 4JAYA 1N61C 1W1QA 1V97A 2VFUA 5D79A 3S1DA 2R2ZA 1N62C 3NRZB 2PLSA 4BCAA 1E8HA 5AWVA 3RJ8A 2BVHA 3I99A 4PVJA 2P3HA 1QLTA 5I1VA 1FFUC 1N60C 1WVFA 3HSUA 1UXYA 5HQXA 5AE3A 4ML8A 1DZNA 2UUVA 3PQBA 2E3TA 3DEDA 2BVFA 3DQ0A 3TX1A 2Y08A 1VDVA 3LLBA 4HG0A 3NS1B 5AE1A 2Y4GA 1E8GA 2VAOA 5FXDA 2VFVA 2W54A 4DNSA 4OALA 3SR6B 2GQTA 1W1MA 4PYTA 1N5WC 1MBTA 3VTEA 5I1WA 2Q85A 3GSYA 1W1RA 1RM6B 3C0PA 3RJAA 2IPIA 4EC3A 2I0KA 2EXRA 1VAOA 3FW7A 5L6FA 3W8XA 5AE2A 3S1FA 3W8WA 5ADZA 1MBBA 2YVSA 5K8EA 5G5HB 5FXFA 4JB1A 1I19A 1DIQA 3ETRB 2Q4WA 4BBYA 2OAIA 3NVZB 2RK5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MBR A;  4BC9 A;  1E8F A;  2W3R A;  3HRD C;  5G5G B;  3BW7 A;  3AM9 A;  1FIQ B;  1HSK A;  3AMZ A;  3JS8 A;  5FXE A;  1ZXI C;  5FXP A;  1W1L A;  2GQU A;  4O95 A;  1T3Q C;  1FO4 A;  1N63 C;  3NVV B;  3S1E A;  2PLI A;  1AHV A;  4XLO A;  2NQW A;  1N5X A;  1E0Y A;  3KJM A;  2VFR A;  2VFS A;  1QLU A;  1W1O A;  3B9J B;  2O3G A;  1DII A;  1WYG A;  4ZOH B;  1F0X A;  1WVE A;  2P4P A;  2VFT A;  1SB3 B;  3EUB 3;  5HMR A;  2P13 A;  3NVY B;  3LAE A;  1W1S A;  2W3S A;  3AN1 A;  2AXR A;  1W1J A;  3S1C A;  1FFV C;  1JRP A;  4BC7 A;  1JRO A;  4MLA A;  1W1K A;  1AHU A;  2QKN A;  2W55 A;  3PM9 A;  2R8D A;  3W8Z A;  1ZR6 A;  2QPM A;  2BVG A;  5HHZ A;  3NVW B;  1AHZ A;  4JAY A;  1N61 C;  1W1Q A;  1V97 A;  2VFU A;  3S1D A;  2R2Z A;  1N62 C;  3NRZ B;  2PLS A;  4BCA A;  1E8H A;  2BVH A;  3I99 A;  2P3H A;  1QLT A;  1FFU C;  1N60 C;  1WVF A;  1UXY A;  5HQX A;  5AE3 A;  4ML8 A;  1DZN A;  2E3T A;  3DED A;  2BVF A;  3DQ0 A;  3TX1 A;  1VDV A;  3LLB A;  4HG0 A;  3NS1 B;  5AE1 A;  1E8G A;  2VAO A;  5FXD A;  2VFV A;  2W54 A;  4OAL A;  3SR6 B;  2GQT A;  1W1M A;  4PYT A;  1N5W C;  1MBT A;  2Q85 A;  1W1R A;  1RM6 B;  3C0P A;  2I0K A;  2EXR A;  1VAO A;  3W8X A;  5AE2 A;  3S1F A;  3W8W A;  5ADZ A;  1MBB A;  2YVS A;  5G5H B;  5FXF A;  4JB1 A;  1I19 A;  1DIQ A;  3ETR B;  2Q4W A;  4BBY A;  2OAI A;  3NVZ B;  2RK5 A; 
#chains in the Genus database with same CATH topology
 2MBR A;  4BC9 A;  3POP A;  1E8F A;  2W3R A;  3HRD C;  5G5G B;  3BW7 A;  3AM9 A;  4PZF A;  1FIQ B;  1HSK A;  3AMZ A;  3TSH A;  5L6G A;  3JS8 A;  5FXE A;  3D2D A;  3FW8 A;  1ZXI C;  4PWC A;  5FXP A;  1W1L A;  2GQU A;  3D2J A;  4O95 A;  1T3Q C;  1FO4 A;  1N63 C;  3NVV B;  2Y3R A;  3S1E A;  3TSJ A;  2PLI A;  1AHV A;  3FWA A;  4XLO A;  2UUU A;  2NQW A;  1N5X A;  1E0Y A;  3KJM A;  2VFR A;  2VFS A;  1QLU A;  1W1O A;  3FW9 A;  3B9J B;  2O3G A;  1DII A;  1WYG A;  4PVE A;  4ZOH B;  1F0X A;  1WVE A;  3D2H A;  2P4P A;  2VFT A;  1SB3 B;  3EUB 3;  4PWB A;  5HMR A;  2P13 A;  4PVK A;  3NVY B;  3LAE A;  1W1S A;  2W3S A;  3AN1 A;  2AXR A;  1W1J A;  2WDW A;  3S1C A;  1FFV C;  1JRP A;  4PVH A;  4BC7 A;  1JRO A;  4MLA A;  1W1K A;  1AHU A;  2QKN A;  4UD8 A;  2W55 A;  3PM9 A;  2R8D A;  2Y3S A;  3W8Z A;  1ZR6 A;  2QPM A;  2BVG A;  5HHZ A;  3NVW B;  1AHZ A;  4JAY A;  1N61 C;  1W1Q A;  1V97 A;  2VFU A;  5D79 A;  3S1D A;  2R2Z A;  1N62 C;  3NRZ B;  2PLS A;  4BCA A;  1E8H A;  5AWV A;  3RJ8 A;  2BVH A;  3I99 A;  4PVJ A;  2P3H A;  1QLT A;  5I1V A;  1FFU C;  1N60 C;  1WVF A;  3HSU A;  1UXY A;  5HQX A;  5AE3 A;  4ML8 A;  1DZN A;  2UUV A;  3PQB A;  2E3T A;  3DED A;  2BVF A;  3DQ0 A;  3TX1 A;  2Y08 A;  1VDV A;  3LLB A;  4HG0 A;  3NS1 B;  5AE1 A;  2Y4G A;  1E8G A;  2VAO A;  5FXD A;  2VFV A;  2W54 A;  4DNS A;  4OAL A;  3SR6 B;  2GQT A;  1W1M A;  4PYT A;  1N5W C;  1MBT A;  3VTE A;  5I1W A;  2Q85 A;  3GSY A;  1W1R A;  1RM6 B;  3C0P A;  3RJA A;  2IPI A;  4EC3 A;  2I0K A;  2EXR A;  1VAO A;  3FW7 A;  5L6F A;  3W8X A;  5AE2 A;  3S1F A;  3W8W A;  5ADZ A;  1MBB A;  2YVS A;  5K8E A;  5G5H B;  5FXF A;  4JB1 A;  1I19 A;  1DIQ A;  3ETR B;  2Q4W A;  4BBY A;  2OAI A;  3NVZ B;  2RK5 A; 
#chains in the Genus database with same CATH homology
 2MBR A;  4BC9 A;  3POP A;  1E8F A;  2W3R A;  3HRD C;  5G5G B;  3BW7 A;  3AM9 A;  4PZF A;  1FIQ B;  1HSK A;  3AMZ A;  3TSH A;  5L6G A;  3JS8 A;  5FXE A;  3D2D A;  3FW8 A;  1ZXI C;  4PWC A;  5FXP A;  1W1L A;  2GQU A;  3D2J A;  4O95 A;  1T3Q C;  1FO4 A;  1N63 C;  3NVV B;  2Y3R A;  3S1E A;  3TSJ A;  2PLI A;  1AHV A;  3FWA A;  4XLO A;  2UUU A;  2NQW A;  1N5X A;  1E0Y A;  3KJM A;  2VFR A;  2VFS A;  1QLU A;  1W1O A;  3FW9 A;  3B9J B;  2O3G A;  1DII A;  1WYG A;  4PVE A;  4ZOH B;  1F0X A;  1WVE A;  3D2H A;  2P4P A;  2VFT A;  1SB3 B;  3EUB 3;  4PWB A;  5HMR A;  2P13 A;  4PVK A;  3NVY B;  3LAE A;  1W1S A;  2W3S A;  3AN1 A;  2AXR A;  1W1J A;  2WDW A;  3S1C A;  1FFV C;  1JRP A;  4PVH A;  4BC7 A;  1JRO A;  4MLA A;  1W1K A;  1AHU A;  2QKN A;  4UD8 A;  2W55 A;  3PM9 A;  2R8D A;  2Y3S A;  3W8Z A;  1ZR6 A;  2QPM A;  2BVG A;  5HHZ A;  3NVW B;  1AHZ A;  4JAY A;  1N61 C;  1W1Q A;  1V97 A;  2VFU A;  5D79 A;  3S1D A;  2R2Z A;  1N62 C;  3NRZ B;  2PLS A;  4BCA A;  1E8H A;  5AWV A;  3RJ8 A;  2BVH A;  3I99 A;  4PVJ A;  2P3H A;  1QLT A;  5I1V A;  1FFU C;  1N60 C;  1WVF A;  3HSU A;  1UXY A;  5HQX A;  5AE3 A;  4ML8 A;  1DZN A;  2UUV A;  3PQB A;  2E3T A;  3DED A;  2BVF A;  3DQ0 A;  3TX1 A;  2Y08 A;  1VDV A;  3LLB A;  4HG0 A;  3NS1 B;  5AE1 A;  2Y4G A;  1E8G A;  2VAO A;  5FXD A;  2VFV A;  2W54 A;  4DNS A;  4OAL A;  3SR6 B;  2GQT A;  1W1M A;  4PYT A;  1N5W C;  1MBT A;  3VTE A;  5I1W A;  2Q85 A;  3GSY A;  1W1R A;  1RM6 B;  3C0P A;  3RJA A;  2IPI A;  4EC3 A;  2I0K A;  2EXR A;  1VAO A;  3FW7 A;  5L6F A;  3W8X A;  5AE2 A;  3S1F A;  3W8W A;  5ADZ A;  1MBB A;  2YVS A;  5K8E A;  5G5H B;  5FXF A;  4JB1 A;  1I19 A;  1DIQ A;  3ETR B;  2Q4W A;  4BBY A;  2OAI A;  3NVZ B;  2RK5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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