2P13 | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	85
structure length	85
Chain Sequence	EKVVAEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHNIGKVRVHRT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Structural genomics, unknown function
source organism	Nitrosomonas europaea
publication title	The crystal structure of the transporter associated domain CorC_HlyC from Nitrosomonas europaea rcsb
molecule keywords	CBS domain
total genus	21
structure length	85
sequence length	85
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-03-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03471	CorC_HlyC	Transporter associated domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	2p13A00

4PYTA 1UXYA 1W1JA 2MBRA 1ZXIC 2VFVA 1MBTA 3I99A 3W8WA 2VFSA 3NVVB 2VAOA 2QPMA 3AM9A 3S1CA 2BVGA 5FXFA 1QLTA 1WYGA 3JS8A 2AXRA 2Q4WA 3ETRB 1N62C 1W1RA 1VAOA 2QKNA 2W55A 1FFVC 1RM6B 4JAYA 3DQ0A 1W1LA 2OAIA 1W1QA 5AE1A 2VFUA 4BC7A 3NVYB 1W1MA 1JRPA 1MBBA 1WVFA 1E8GA 3SR6B 5ADZA 5HHZA 2PLSA 4ML8A 4O95A 1AHZA 2GQTA 1W1SA 4JB1A 2RK5A 3C0PA 2P3HA 3EUB3 1V97A 4OALA 2P4PA 1FO4A 1ZR6A 3TX1A 1SB3B 1E0YA 4XLOA 2YVSA 1HSKA 2W3RA 5AE2A 1DIIA 2Q85A 5FXPA 2GQUA 4BCAA 5HQXA 1AHUA 4ZOHB 1T3QC 2VFTA 1N63C 1DZNA 4MLAA 1VDVA 1N60C 1QLUA 3KJMA 3NS1B 1F0XA 3B9JB 1W1OA 3S1EA 2PLIA 1WVEA 3DEDA 1FIQB 3S1DA 2NQWA 1E8HA 2P13A 5FXDA 5G5HB 5AE3A 1N61C 3NRZB 3W8ZA 1W1KA 1DIQA 1I19A 5FXEA 3PM9A 3BW7A 2EXRA 4BBYA 3NVZB 2BVHA 3LAEA 2E3TA 2W54A 1E8FA 2VFRA 3AMZA 1N5XA 1FFUC 1AHVA 2BVFA 1N5WC 2R8DA 4HG0A 1JROA 4BC9A 2I0KA 2W3SA 5G5GB 3NVWB 2O3GA 2R2ZA 3LLBA 3W8XA 5HMRA 3HRDC 3S1FA 3AN1A
chains in the Genus database with same CATH superfamily

4PYTA 1UXYA 1W1JA 2MBRA 1ZXIC 2VFVA 1MBTA 3GSYA 3I99A 3W8WA 3RJAA 2VFSA 3NVVB 2VAOA 3TSJA 2QPMA 3AM9A 3S1CA 2BVGA 5FXFA 5I1WA 1QLTA 3TSHA 5AWVA 4DNSA 1WYGA 5I1VA 3JS8A 3PQBA 2AXRA 2Q4WA 3ETRB 1N62C 1W1RA 1VAOA 2QKNA 2W55A 1FFVC 1RM6B 4JAYA 3DQ0A 3FWAA 1W1LA 2OAIA 4PVEA 4EC3A 1W1QA 4UD8A 2VFUA 4BC7A 5AE1A 3NVYB 2Y4GA 1W1MA 1JRPA 1MBBA 1WVFA 1E8GA 3SR6B 5ADZA 5HHZA 2Y3SA 2PLSA 4ML8A 4O95A 1AHZA 4PZFA 2GQTA 1W1SA 4JB1A 2RK5A 3C0PA 3HSUA 4PWCA 2P3HA 3EUB3 1V97A 4OALA 2P4PA 1FO4A 1ZR6A 3TX1A 4PVJA 1SB3B 1E0YA 5K8EA 4PWBA 4XLOA 2YVSA 1HSKA 2W3RA 5AE2A 1DIIA 2Q85A 5FXPA 2GQUA 4BCAA 5HQXA 1AHUA 4ZOHB 1T3QC 2VFTA 1N63C 2WDWA 3D2DA 5L6FA 2UUUA 1DZNA 4MLAA 1VDVA 3FW7A 1N60C 5L6GA 1QLUA 3KJMA 3NS1B 1F0XA 3B9JB 1W1OA 3S1EA 2PLIA 1WVEA 3DEDA 1FIQB 3S1DA 3POPA 2NQWA 1E8HA 2P13A 5D79A 5FXDA 5G5HB 5AE3A 1N61C 3NRZB 3FW9A 3W8ZA 1W1KA 1DIQA 1I19A 5FXEA 2Y08A 3PM9A 3BW7A 2EXRA 3FW8A 4BBYA 3NVZB 2BVHA 3LAEA 2E3TA 2IPIA 2W54A 1E8FA 4PVHA 2VFRA 3RJ8A 3AMZA 1N5XA 1FFUC 1AHVA 2BVFA 2UUVA 2Y3RA 1N5WC 2R8DA 4HG0A 1JROA 4BC9A 3D2HA 2I0KA 3VTEA 2W3SA 5G5GB 4PVKA 3NVWB 2O3GA 2R2ZA 3D2JA 3LLBA 3W8XA 5HMRA 3HRDC 3S1FA 3AN1A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4PYT A;  1UXY A;  1W1J A;  2MBR A;  1ZXI C;  2VFV A;  1MBT A;  3I99 A;  3W8W A;  2VFS A;  3NVV B;  2VAO A;  2QPM A;  3AM9 A;  3S1C A;  2BVG A;  5FXF A;  1QLT A;  1WYG A;  3JS8 A;  2AXR A;  2Q4W A;  3ETR B;  1N62 C;  1W1R A;  1VAO A;  2QKN A;  2W55 A;  1FFV C;  1RM6 B;  4JAY A;  3DQ0 A;  1W1L A;  2OAI A;  1W1Q A;  5AE1 A;  2VFU A;  4BC7 A;  3NVY B;  1W1M A;  1JRP A;  1MBB A;  1WVF A;  1E8G A;  3SR6 B;  5ADZ A;  5HHZ A;  2PLS A;  4ML8 A;  4O95 A;  1AHZ A;  2GQT A;  1W1S A;  4JB1 A;  2RK5 A;  3C0P A;  2P3H A;  3EUB 3;  1V97 A;  4OAL A;  2P4P A;  1FO4 A;  1ZR6 A;  3TX1 A;  1SB3 B;  1E0Y A;  4XLO A;  2YVS A;  1HSK A;  2W3R A;  5AE2 A;  1DII A;  2Q85 A;  5FXP A;  2GQU A;  4BCA A;  5HQX A;  1AHU A;  4ZOH B;  1T3Q C;  2VFT A;  1N63 C;  1DZN A;  4MLA A;  1VDV A;  1N60 C;  1QLU A;  3KJM A;  3NS1 B;  1F0X A;  3B9J B;  1W1O A;  3S1E A;  2PLI A;  1WVE A;  3DED A;  1FIQ B;  3S1D A;  2NQW A;  1E8H A;  2P13 A;  5FXD A;  5G5H B;  5AE3 A;  1N61 C;  3NRZ B;  3W8Z A;  1W1K A;  1DIQ A;  1I19 A;  5FXE A;  3PM9 A;  3BW7 A;  2EXR A;  4BBY A;  3NVZ B;  2BVH A;  3LAE A;  2E3T A;  2W54 A;  1E8F A;  2VFR A;  3AMZ A;  1N5X A;  1FFU C;  1AHV A;  2BVF A;  1N5W C;  2R8D A;  4HG0 A;  1JRO A;  4BC9 A;  2I0K A;  2W3S A;  5G5G B;  3NVW B;  2O3G A;  2R2Z A;  3LLB A;  3W8X A;  5HMR A;  3HRD C;  3S1F A;  3AN1 A; 
#chains in the Genus database with same CATH topology
 4PYT A;  1UXY A;  1W1J A;  2MBR A;  1ZXI C;  2VFV A;  1MBT A;  3GSY A;  3I99 A;  3W8W A;  3RJA A;  2VFS A;  3NVV B;  2VAO A;  3TSJ A;  2QPM A;  3AM9 A;  3S1C A;  2BVG A;  5FXF A;  5I1W A;  1QLT A;  3TSH A;  5AWV A;  4DNS A;  1WYG A;  5I1V A;  3JS8 A;  3PQB A;  2AXR A;  2Q4W A;  3ETR B;  1N62 C;  1W1R A;  1VAO A;  2QKN A;  2W55 A;  1FFV C;  1RM6 B;  4JAY A;  3DQ0 A;  3FWA A;  1W1L A;  2OAI A;  4PVE A;  4EC3 A;  1W1Q A;  4UD8 A;  2VFU A;  4BC7 A;  5AE1 A;  3NVY B;  2Y4G A;  1W1M A;  1JRP A;  1MBB A;  1WVF A;  1E8G A;  3SR6 B;  5ADZ A;  5HHZ A;  2Y3S A;  2PLS A;  4ML8 A;  4O95 A;  1AHZ A;  4PZF A;  2GQT A;  1W1S A;  4JB1 A;  2RK5 A;  3C0P A;  3HSU A;  4PWC A;  2P3H A;  3EUB 3;  1V97 A;  4OAL A;  2P4P A;  1FO4 A;  1ZR6 A;  3TX1 A;  4PVJ A;  1SB3 B;  1E0Y A;  5K8E A;  4PWB A;  4XLO A;  2YVS A;  1HSK A;  2W3R A;  5AE2 A;  1DII A;  2Q85 A;  5FXP A;  2GQU A;  4BCA A;  5HQX A;  1AHU A;  4ZOH B;  1T3Q C;  2VFT A;  1N63 C;  2WDW A;  3D2D A;  5L6F A;  2UUU A;  1DZN A;  4MLA A;  1VDV A;  3FW7 A;  1N60 C;  5L6G A;  1QLU A;  3KJM A;  3NS1 B;  1F0X A;  3B9J B;  1W1O A;  3S1E A;  2PLI A;  1WVE A;  3DED A;  1FIQ B;  3S1D A;  3POP A;  2NQW A;  1E8H A;  2P13 A;  5D79 A;  5FXD A;  5G5H B;  5AE3 A;  1N61 C;  3NRZ B;  3FW9 A;  3W8Z A;  1W1K A;  1DIQ A;  1I19 A;  5FXE A;  2Y08 A;  3PM9 A;  3BW7 A;  2EXR A;  3FW8 A;  4BBY A;  3NVZ B;  2BVH A;  3LAE A;  2E3T A;  2IPI A;  2W54 A;  1E8F A;  4PVH A;  2VFR A;  3RJ8 A;  3AMZ A;  1N5X A;  1FFU C;  1AHV A;  2BVF A;  2UUV A;  2Y3R A;  1N5W C;  2R8D A;  4HG0 A;  1JRO A;  4BC9 A;  3D2H A;  2I0K A;  3VTE A;  2W3S A;  5G5G B;  4PVK A;  3NVW B;  2O3G A;  2R2Z A;  3D2J A;  3LLB A;  3W8X A;  5HMR A;  3HRD C;  3S1F A;  3AN1 A; 
#chains in the Genus database with same CATH homology
 4PYT A;  1UXY A;  1W1J A;  2MBR A;  1ZXI C;  2VFV A;  1MBT A;  3GSY A;  3I99 A;  3W8W A;  3RJA A;  2VFS A;  3NVV B;  2VAO A;  3TSJ A;  2QPM A;  3AM9 A;  3S1C A;  2BVG A;  5FXF A;  5I1W A;  1QLT A;  3TSH A;  5AWV A;  4DNS A;  1WYG A;  5I1V A;  3JS8 A;  3PQB A;  2AXR A;  2Q4W A;  3ETR B;  1N62 C;  1W1R A;  1VAO A;  2QKN A;  2W55 A;  1FFV C;  1RM6 B;  4JAY A;  3DQ0 A;  3FWA A;  1W1L A;  2OAI A;  4PVE A;  4EC3 A;  1W1Q A;  4UD8 A;  2VFU A;  4BC7 A;  5AE1 A;  3NVY B;  2Y4G A;  1W1M A;  1JRP A;  1MBB A;  1WVF A;  1E8G A;  3SR6 B;  5ADZ A;  5HHZ A;  2Y3S A;  2PLS A;  4ML8 A;  4O95 A;  1AHZ A;  4PZF A;  2GQT A;  1W1S A;  4JB1 A;  2RK5 A;  3C0P A;  3HSU A;  4PWC A;  2P3H A;  3EUB 3;  1V97 A;  4OAL A;  2P4P A;  1FO4 A;  1ZR6 A;  3TX1 A;  4PVJ A;  1SB3 B;  1E0Y A;  5K8E A;  4PWB A;  4XLO A;  2YVS A;  1HSK A;  2W3R A;  5AE2 A;  1DII A;  2Q85 A;  5FXP A;  2GQU A;  4BCA A;  5HQX A;  1AHU A;  4ZOH B;  1T3Q C;  2VFT A;  1N63 C;  2WDW A;  3D2D A;  5L6F A;  2UUU A;  1DZN A;  4MLA A;  1VDV A;  3FW7 A;  1N60 C;  5L6G A;  1QLU A;  3KJM A;  3NS1 B;  1F0X A;  3B9J B;  1W1O A;  3S1E A;  2PLI A;  1WVE A;  3DED A;  1FIQ B;  3S1D A;  3POP A;  2NQW A;  1E8H A;  2P13 A;  5D79 A;  5FXD A;  5G5H B;  5AE3 A;  1N61 C;  3NRZ B;  3FW9 A;  3W8Z A;  1W1K A;  1DIQ A;  1I19 A;  5FXE A;  2Y08 A;  3PM9 A;  3BW7 A;  2EXR A;  3FW8 A;  4BBY A;  3NVZ B;  2BVH A;  3LAE A;  2E3T A;  2IPI A;  2W54 A;  1E8F A;  4PVH A;  2VFR A;  3RJ8 A;  3AMZ A;  1N5X A;  1FFU C;  1AHV A;  2BVF A;  2UUV A;  2Y3R A;  1N5W C;  2R8D A;  4HG0 A;  1JRO A;  4BC9 A;  3D2H A;  2I0K A;  3VTE A;  2W3S A;  5G5G B;  4PVK A;  3NVW B;  2O3G A;  2R2Z A;  3D2J A;  3LLB A;  3W8X A;  5HMR A;  3HRD C;  3S1F A;  3AN1 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2P13A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations