2P4PA

Crystal structure of a corc_hlyc domain from haemophilus ducreyi
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
84
structure length
78
Chain Sequence
NAMRRNEDSWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRIPTDFVLYDYFEIIDTENFRIDQLMVSFRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of a CorC_HlyC domain from Haemophilus ducreyi
rcsb
molecule tags Structural genomics, unknown function
source organism Haemophilus ducreyi
molecule keywords Hypothetical protein HD1797
total genus 9
structure length 78
sequence length 84
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2p4pA00
3AN1A 3KJMA 3W8ZA 1WVFA 4OALA 4JAYA 5AE3A 3AM9A 1QLUA 1VDVA 1VAOA 1WVEA 2Q85A 3C0PA 3EUB3 2W3RA 2NQWA 2VFUA 1N5WC 1RM6B 1ZXIC 3NRZB 4PYTA 2PLIA 1QLTA 2R2ZA 2VAOA 1F0XA 2VFRA 3PM9A 1MBTA 1AHUA 2AXRA 1WYGA 1ZR6A 5AE2A 1N5XA 5HQXA 3S1DA 1SB3B 1FFUC 5FXEA 1W1MA 1FO4A 2VFVA 4BCAA 4ZOHB 2E3TA 5AE1A 3S1EA 1W1LA 3LLBA 5G5GB 3DQ0A 3I99A 2VFSA 4ML8A 2BVGA 3ETRB 4BC9A 3SR6B 1E8FA 1FFVC 5ADZA 4BC7A 2W55A 1I19A 2P3HA 1W1SA 1N61C 3LAEA 1HSKA 2P13A 3B9JB 3W8WA 1UXYA 1V97A 3HRDC 1N60C 2I0KA 2MBRA 3S1FA 1DIIA 1DZNA 5FXPA 4O95A 2BVHA 2GQUA 2RK5A 3NVYB 2W54A 3NS1B 2P4PA 3AMZA 4MLAA 1W1OA 2EXRA 1JRPA 2QKNA 1E0YA 2VFTA 3S1CA 2O3GA 2R8DA 3NVZB 1N62C 1W1JA 2PLSA 3NVVB 1DIQA 1T3QC 2Q4WA 1N63C 3JS8A 1E8HA 2QPMA 2BVFA 2YVSA 1JROA 4XLOA 5FXDA 2W3SA 3W8XA 1E8GA 1FIQB 2OAIA 3BW7A 5FXFA 4BBYA 1MBBA 5G5HB 5HHZA 3DEDA 3NVWB 5HMRA 2GQTA 1AHVA 1W1QA 1W1RA 4HG0A 3TX1A 1AHZA 1W1KA 4JB1A
chains in the Genus database with same CATH superfamily
3AN1A 5D79A 3KJMA 4UD8A 3W8ZA 1WVFA 4PVEA 2WDWA 4OALA 4JAYA 3FW7A 5AE3A 3AM9A 1QLUA 1VDVA 1VAOA 1WVEA 3VTEA 2Q85A 3C0PA 4EC3A 4DNSA 3HSUA 3EUB3 2W3RA 2NQWA 2VFUA 1N5WC 1RM6B 3PQBA 1ZXIC 3NRZB 4PYTA 2PLIA 1QLTA 2R2ZA 2VAOA 1F0XA 2VFRA 3PM9A 1MBTA 1AHUA 2AXRA 1WYGA 3RJAA 1ZR6A 5AE2A 1N5XA 5HQXA 2UUUA 1SB3B 3S1DA 1FFUC 2IPIA 4PVHA 5FXEA 1W1MA 1FO4A 2VFVA 4BCAA 4ZOHB 2E3TA 5AE1A 3S1EA 1W1LA 3LLBA 5G5GB 3DQ0A 3I99A 2VFSA 4ML8A 2BVGA 3RJ8A 3ETRB 4BC9A 3SR6B 1E8FA 1FFVC 5ADZA 4BC7A 2W55A 1I19A 2P3HA 1W1SA 1N61C 3LAEA 3TSJA 1HSKA 2P13A 3B9JB 3D2DA 3W8WA 1UXYA 1V97A 3POPA 3HRDC 1N60C 2I0KA 2MBRA 3S1FA 3TSHA 1DIIA 1DZNA 5FXPA 2UUVA 4O95A 2BVHA 5L6GA 2Y3SA 2GQUA 2RK5A 3NVYB 2W54A 4PVJA 5K8EA 5I1WA 4PWCA 3NS1B 2P4PA 3FWAA 3AMZA 4MLAA 5AWVA 1W1OA 2EXRA 1JRPA 2QKNA 1E0YA 2VFTA 3D2JA 3S1CA 2O3GA 2R8DA 3NVZB 1N62C 1W1JA 3FW9A 2Y08A 2PLSA 3NVVB 1DIQA 1T3QC 2Q4WA 1N63C 3JS8A 1E8HA 2QPMA 2BVFA 2YVSA 1JROA 4XLOA 5FXDA 2W3SA 3W8XA 1E8GA 1FIQB 2OAIA 3BW7A 4PVKA 3GSYA 5FXFA 4BBYA 1MBBA 5G5HB 5HHZA 3DEDA 3NVWB 5HMRA 5I1VA 2GQTA 2Y3RA 1AHVA 2Y4GA 1W1QA 1W1RA 4PZFA 5L6FA 4HG0A 3FW8A 4PWBA 3D2HA 3TX1A 1AHZA 1W1KA 4JB1A
chains in the Genus database with same CATH topology
3AN1A 5D79A 3KJMA 4UD8A 3W8ZA 1WVFA 4PVEA 2WDWA 4OALA 4JAYA 3FW7A 5AE3A 3AM9A 1QLUA 1VDVA 1VAOA 1WVEA 3VTEA 2Q85A 3C0PA 4EC3A 4DNSA 3HSUA 3EUB3 2W3RA 2NQWA 2VFUA 1N5WC 1RM6B 3PQBA 1ZXIC 3NRZB 4PYTA 2PLIA 1QLTA 2R2ZA 2VAOA 1F0XA 2VFRA 3PM9A 1MBTA 1AHUA 2AXRA 1WYGA 3RJAA 1ZR6A 5AE2A 1N5XA 5HQXA 2UUUA 1SB3B 3S1DA 1FFUC 2IPIA 4PVHA 5FXEA 1W1MA 1FO4A 2VFVA 4BCAA 4ZOHB 2E3TA 5AE1A 3S1EA 1W1LA 3LLBA 5G5GB 3DQ0A 3I99A 2VFSA 4ML8A 2BVGA 3RJ8A 3ETRB 4BC9A 3SR6B 1E8FA 1FFVC 5ADZA 4BC7A 2W55A 1I19A 2P3HA 1W1SA 1N61C 3LAEA 3TSJA 1HSKA 2P13A 3B9JB 3D2DA 3W8WA 1UXYA 1V97A 3POPA 3HRDC 1N60C 2I0KA 2MBRA 3S1FA 3TSHA 1DIIA 1DZNA 5FXPA 2UUVA 4O95A 2BVHA 5L6GA 2Y3SA 2GQUA 2RK5A 3NVYB 2W54A 4PVJA 5K8EA 5I1WA 4PWCA 3NS1B 2P4PA 3FWAA 3AMZA 4MLAA 5AWVA 1W1OA 2EXRA 1JRPA 2QKNA 1E0YA 2VFTA 3D2JA 3S1CA 2O3GA 2R8DA 3NVZB 1N62C 1W1JA 3FW9A 2Y08A 2PLSA 3NVVB 1DIQA 1T3QC 2Q4WA 1N63C 3JS8A 1E8HA 2QPMA 2BVFA 2YVSA 1JROA 4XLOA 5FXDA 2W3SA 3W8XA 1E8GA 1FIQB 2OAIA 3BW7A 4PVKA 3GSYA 5FXFA 4BBYA 1MBBA 5G5HB 5HHZA 3DEDA 3NVWB 5HMRA 5I1VA 2GQTA 2Y3RA 1AHVA 2Y4GA 1W1QA 1W1RA 4PZFA 5L6FA 4HG0A 3FW8A 4PWBA 3D2HA 3TX1A 1AHZA 1W1KA 4JB1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AN1 A;  3KJM A;  3W8Z A;  1WVF A;  4OAL A;  4JAY A;  5AE3 A;  3AM9 A;  1QLU A;  1VDV A;  1VAO A;  1WVE A;  2Q85 A;  3C0P A;  3EUB 3;  2W3R A;  2NQW A;  2VFU A;  1N5W C;  1RM6 B;  1ZXI C;  3NRZ B;  4PYT A;  2PLI A;  1QLT A;  2R2Z A;  2VAO A;  1F0X A;  2VFR A;  3PM9 A;  1MBT A;  1AHU A;  2AXR A;  1WYG A;  1ZR6 A;  5AE2 A;  1N5X A;  5HQX A;  3S1D A;  1SB3 B;  1FFU C;  5FXE A;  1W1M A;  1FO4 A;  2VFV A;  4BCA A;  4ZOH B;  2E3T A;  5AE1 A;  3S1E A;  1W1L A;  3LLB A;  5G5G B;  3DQ0 A;  3I99 A;  2VFS A;  4ML8 A;  2BVG A;  3ETR B;  4BC9 A;  3SR6 B;  1E8F A;  1FFV C;  5ADZ A;  4BC7 A;  2W55 A;  1I19 A;  2P3H A;  1W1S A;  1N61 C;  3LAE A;  1HSK A;  2P13 A;  3B9J B;  3W8W A;  1UXY A;  1V97 A;  3HRD C;  1N60 C;  2I0K A;  2MBR A;  3S1F A;  1DII A;  1DZN A;  5FXP A;  4O95 A;  2BVH A;  2GQU A;  2RK5 A;  3NVY B;  2W54 A;  3NS1 B;  2P4P A;  3AMZ A;  4MLA A;  1W1O A;  2EXR A;  1JRP A;  2QKN A;  1E0Y A;  2VFT A;  3S1C A;  2O3G A;  2R8D A;  3NVZ B;  1N62 C;  1W1J A;  2PLS A;  3NVV B;  1DIQ A;  1T3Q C;  2Q4W A;  1N63 C;  3JS8 A;  1E8H A;  2QPM A;  2BVF A;  2YVS A;  1JRO A;  4XLO A;  5FXD A;  2W3S A;  3W8X A;  1E8G A;  1FIQ B;  2OAI A;  3BW7 A;  5FXF A;  4BBY A;  1MBB A;  5G5H B;  5HHZ A;  3DED A;  3NVW B;  5HMR A;  2GQT A;  1AHV A;  1W1Q A;  1W1R A;  4HG0 A;  3TX1 A;  1AHZ A;  1W1K A;  4JB1 A; 
#chains in the Genus database with same CATH topology
 3AN1 A;  5D79 A;  3KJM A;  4UD8 A;  3W8Z A;  1WVF A;  4PVE A;  2WDW A;  4OAL A;  4JAY A;  3FW7 A;  5AE3 A;  3AM9 A;  1QLU A;  1VDV A;  1VAO A;  1WVE A;  3VTE A;  2Q85 A;  3C0P A;  4EC3 A;  4DNS A;  3HSU A;  3EUB 3;  2W3R A;  2NQW A;  2VFU A;  1N5W C;  1RM6 B;  3PQB A;  1ZXI C;  3NRZ B;  4PYT A;  2PLI A;  1QLT A;  2R2Z A;  2VAO A;  1F0X A;  2VFR A;  3PM9 A;  1MBT A;  1AHU A;  2AXR A;  1WYG A;  3RJA A;  1ZR6 A;  5AE2 A;  1N5X A;  5HQX A;  2UUU A;  1SB3 B;  3S1D A;  1FFU C;  2IPI A;  4PVH A;  5FXE A;  1W1M A;  1FO4 A;  2VFV A;  4BCA A;  4ZOH B;  2E3T A;  5AE1 A;  3S1E A;  1W1L A;  3LLB A;  5G5G B;  3DQ0 A;  3I99 A;  2VFS A;  4ML8 A;  2BVG A;  3RJ8 A;  3ETR B;  4BC9 A;  3SR6 B;  1E8F A;  1FFV C;  5ADZ A;  4BC7 A;  2W55 A;  1I19 A;  2P3H A;  1W1S A;  1N61 C;  3LAE A;  3TSJ A;  1HSK A;  2P13 A;  3B9J B;  3D2D A;  3W8W A;  1UXY A;  1V97 A;  3POP A;  3HRD C;  1N60 C;  2I0K A;  2MBR A;  3S1F A;  3TSH A;  1DII A;  1DZN A;  5FXP A;  2UUV A;  4O95 A;  2BVH A;  5L6G A;  2Y3S A;  2GQU A;  2RK5 A;  3NVY B;  2W54 A;  4PVJ A;  5K8E A;  5I1W A;  4PWC A;  3NS1 B;  2P4P A;  3FWA A;  3AMZ A;  4MLA A;  5AWV A;  1W1O A;  2EXR A;  1JRP A;  2QKN A;  1E0Y A;  2VFT A;  3D2J A;  3S1C A;  2O3G A;  2R8D A;  3NVZ B;  1N62 C;  1W1J A;  3FW9 A;  2Y08 A;  2PLS A;  3NVV B;  1DIQ A;  1T3Q C;  2Q4W A;  1N63 C;  3JS8 A;  1E8H A;  2QPM A;  2BVF A;  2YVS A;  1JRO A;  4XLO A;  5FXD A;  2W3S A;  3W8X A;  1E8G A;  1FIQ B;  2OAI A;  3BW7 A;  4PVK A;  3GSY A;  5FXF A;  4BBY A;  1MBB A;  5G5H B;  5HHZ A;  3DED A;  3NVW B;  5HMR A;  5I1V A;  2GQT A;  2Y3R A;  1AHV A;  2Y4G A;  1W1Q A;  1W1R A;  4PZF A;  5L6F A;  4HG0 A;  3FW8 A;  4PWB A;  3D2H A;  3TX1 A;  1AHZ A;  1W1K A;  4JB1 A; 
#chains in the Genus database with same CATH homology
 3AN1 A;  5D79 A;  3KJM A;  4UD8 A;  3W8Z A;  1WVF A;  4PVE A;  2WDW A;  4OAL A;  4JAY A;  3FW7 A;  5AE3 A;  3AM9 A;  1QLU A;  1VDV A;  1VAO A;  1WVE A;  3VTE A;  2Q85 A;  3C0P A;  4EC3 A;  4DNS A;  3HSU A;  3EUB 3;  2W3R A;  2NQW A;  2VFU A;  1N5W C;  1RM6 B;  3PQB A;  1ZXI C;  3NRZ B;  4PYT A;  2PLI A;  1QLT A;  2R2Z A;  2VAO A;  1F0X A;  2VFR A;  3PM9 A;  1MBT A;  1AHU A;  2AXR A;  1WYG A;  3RJA A;  1ZR6 A;  5AE2 A;  1N5X A;  5HQX A;  2UUU A;  1SB3 B;  3S1D A;  1FFU C;  2IPI A;  4PVH A;  5FXE A;  1W1M A;  1FO4 A;  2VFV A;  4BCA A;  4ZOH B;  2E3T A;  5AE1 A;  3S1E A;  1W1L A;  3LLB A;  5G5G B;  3DQ0 A;  3I99 A;  2VFS A;  4ML8 A;  2BVG A;  3RJ8 A;  3ETR B;  4BC9 A;  3SR6 B;  1E8F A;  1FFV C;  5ADZ A;  4BC7 A;  2W55 A;  1I19 A;  2P3H A;  1W1S A;  1N61 C;  3LAE A;  3TSJ A;  1HSK A;  2P13 A;  3B9J B;  3D2D A;  3W8W A;  1UXY A;  1V97 A;  3POP A;  3HRD C;  1N60 C;  2I0K A;  2MBR A;  3S1F A;  3TSH A;  1DII A;  1DZN A;  5FXP A;  2UUV A;  4O95 A;  2BVH A;  5L6G A;  2Y3S A;  2GQU A;  2RK5 A;  3NVY B;  2W54 A;  4PVJ A;  5K8E A;  5I1W A;  4PWC A;  3NS1 B;  2P4P A;  3FWA A;  3AMZ A;  4MLA A;  5AWV A;  1W1O A;  2EXR A;  1JRP A;  2QKN A;  1E0Y A;  2VFT A;  3D2J A;  3S1C A;  2O3G A;  2R8D A;  3NVZ B;  1N62 C;  1W1J A;  3FW9 A;  2Y08 A;  2PLS A;  3NVV B;  1DIQ A;  1T3Q C;  2Q4W A;  1N63 C;  3JS8 A;  1E8H A;  2QPM A;  2BVF A;  2YVS A;  1JRO A;  4XLO A;  5FXD A;  2W3S A;  3W8X A;  1E8G A;  1FIQ B;  2OAI A;  3BW7 A;  4PVK A;  3GSY A;  5FXF A;  4BBY A;  1MBB A;  5G5H B;  5HHZ A;  3DED A;  3NVW B;  5HMR A;  5I1V A;  2GQT A;  2Y3R A;  1AHV A;  2Y4G A;  1W1Q A;  1W1R A;  4PZF A;  5L6F A;  4HG0 A;  3FW8 A;  4PWB A;  3D2H A;  3TX1 A;  1AHZ A;  1W1K A;  4JB1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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