2PLSA

Structural genomics, the crystal structure of the corc/hlyc transporter associated domain of a cbs domain protein from chlorobium tepidum tls
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
86
structure length
86
Chain Sequence
SNAVQREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENWRLEVIDMDSKRIDKVLATKID

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of the CorC/HlyC transporter associated domain of a CBS domain protein from Chlorobium tepidum TLS.
rcsb
molecule keywords CBS domain protein
molecule tags Structural genomics, unknown function
source organism Chlorobium tepidum tls
total genus 18
structure length 86
sequence length 86
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2007-04-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2plsA00
3I99A 5ADZA 2P4PA 1N61C 2AXRA 2EXRA 1E8FA 1QLUA 2Q4WA 2VFSA 4ML8A 2W3SA 2BVHA 2YVSA 2Q85A 2E3TA 1WYGA 1AHZA 4BBYA 5HHZA 4BCAA 1FFUC 3W8XA 1E0YA 1FO4A 3AMZA 4JB1A 1HSKA 2BVGA 1W1QA 3AN1A 4BC7A 2R8DA 1AHVA 2RK5A 3LAEA 4O95A 4XLOA 1N63C 3LLBA 1E8HA 1RM6B 3PM9A 3JS8A 4PYTA 1MBBA 2BVFA 1W1MA 5FXFA 2VAOA 1E8GA 1VDVA 5AE1A 3B9JB 3NVVB 1W1OA 2W54A 1QLTA 3NVYB 1W1RA 1JRPA 3DEDA 1N60C 2GQTA 2OAIA 3SR6B 2P3HA 2VFVA 2QKNA 4JAYA 1W1LA 5G5GB 4MLAA 1N5WC 2GQUA 3BW7A 1AHUA 1V97A 1DIQA 3NVZB 2W3RA 3W8ZA 5G5HB 1ZXIC 1T3QC 1UXYA 2PLSA 1W1SA 1WVFA 3NRZB 3S1FA 3C0PA 3S1EA 2R2ZA 1DZNA 3W8WA 1F0XA 3S1CA 1FFVC 2P13A 1W1KA 1SB3B 4OALA 1WVEA 2VFUA 5FXEA 3EUB3 3DQ0A 3S1DA 1MBTA 2VFTA 3ETRB 5HQXA 2I0KA 5AE3A 5FXPA 1N5XA 3TX1A 5FXDA 2O3GA 3AM9A 2NQWA 3KJMA 4ZOHB 1FIQB 3NS1B 1VAOA 1DIIA 5HMRA 1N62C 2PLIA 3NVWB 1ZR6A 4BC9A 2MBRA 5AE2A 2VFRA 1W1JA 4HG0A 1JROA 1I19A 2QPMA 3HRDC 2W55A
chains in the Genus database with same CATH superfamily
3I99A 5ADZA 2P4PA 1N61C 2Y08A 2AXRA 2EXRA 4DNSA 2UUVA 1E8FA 1QLUA 2Q4WA 2VFSA 4PZFA 4ML8A 2W3SA 3D2HA 4PVHA 2BVHA 2YVSA 3FW9A 3D2JA 2Q85A 2E3TA 1WYGA 1AHZA 4BBYA 5HHZA 4BCAA 1FFUC 3W8XA 1E0YA 1FO4A 3AMZA 4JB1A 1HSKA 3GSYA 2BVGA 1W1QA 3AN1A 4BC7A 2R8DA 2IPIA 1AHVA 2RK5A 3LAEA 3RJ8A 4O95A 4XLOA 1N63C 3LLBA 1E8HA 1RM6B 2Y3SA 3PM9A 3JS8A 4PYTA 5I1WA 1MBBA 2BVFA 2WDWA 1W1MA 5FXFA 2VAOA 5D79A 1E8GA 2UUUA 1VDVA 3FWAA 5AE1A 3B9JB 3NVVB 1W1OA 2W54A 3FW8A 1QLTA 3NVYB 4PVJA 1W1RA 5AWVA 1JRPA 3DEDA 1N60C 3POPA 5L6FA 2GQTA 2OAIA 3SR6B 2P3HA 2VFVA 2QKNA 4JAYA 1W1LA 5G5GB 3TSHA 4MLAA 1N5WC 3RJAA 2GQUA 3BW7A 1AHUA 1V97A 4PVKA 3TSJA 1DIQA 3NVZB 2W3RA 3W8ZA 5G5HB 1ZXIC 1T3QC 1UXYA 2PLSA 5L6GA 1W1SA 1WVFA 3NRZB 4PWCA 3S1FA 3FW7A 3C0PA 3S1EA 2R2ZA 3PQBA 1DZNA 3W8WA 1F0XA 3S1CA 1FFVC 4UD8A 2P13A 1W1KA 1SB3B 4OALA 1WVEA 2VFUA 2Y4GA 5FXEA 3EUB3 3DQ0A 3S1DA 1MBTA 2VFTA 3ETRB 5HQXA 3VTEA 2I0KA 5AE3A 5FXPA 4PVEA 1N5XA 3TX1A 5FXDA 2O3GA 3AM9A 2NQWA 3KJMA 4ZOHB 5I1VA 1FIQB 3NS1B 1VAOA 1DIIA 3D2DA 5HMRA 1N62C 2PLIA 3NVWB 2Y3RA 4PWBA 1ZR6A 4BC9A 2MBRA 5AE2A 2VFRA 1W1JA 4HG0A 5K8EA 1JROA 4EC3A 1I19A 2QPMA 3HRDC 2W55A 3HSUA
chains in the Genus database with same CATH topology
3I99A 5ADZA 2P4PA 1N61C 2Y08A 2AXRA 2EXRA 4DNSA 2UUVA 1E8FA 1QLUA 2Q4WA 2VFSA 4PZFA 4ML8A 2W3SA 3D2HA 4PVHA 2BVHA 2YVSA 3FW9A 3D2JA 2Q85A 2E3TA 1WYGA 1AHZA 4BBYA 5HHZA 4BCAA 1FFUC 3W8XA 1E0YA 1FO4A 3AMZA 4JB1A 1HSKA 3GSYA 2BVGA 1W1QA 3AN1A 4BC7A 2R8DA 2IPIA 1AHVA 2RK5A 3LAEA 3RJ8A 4O95A 4XLOA 1N63C 3LLBA 1E8HA 1RM6B 2Y3SA 3PM9A 3JS8A 4PYTA 5I1WA 1MBBA 2BVFA 2WDWA 1W1MA 5FXFA 2VAOA 5D79A 1E8GA 2UUUA 1VDVA 3FWAA 5AE1A 3B9JB 3NVVB 1W1OA 2W54A 3FW8A 1QLTA 3NVYB 4PVJA 1W1RA 5AWVA 1JRPA 3DEDA 1N60C 3POPA 5L6FA 2GQTA 2OAIA 3SR6B 2P3HA 2VFVA 2QKNA 4JAYA 1W1LA 5G5GB 3TSHA 4MLAA 1N5WC 3RJAA 2GQUA 3BW7A 1AHUA 1V97A 4PVKA 3TSJA 1DIQA 3NVZB 2W3RA 3W8ZA 5G5HB 1ZXIC 1T3QC 1UXYA 2PLSA 5L6GA 1W1SA 1WVFA 3NRZB 4PWCA 3S1FA 3FW7A 3C0PA 3S1EA 2R2ZA 3PQBA 1DZNA 3W8WA 1F0XA 3S1CA 1FFVC 4UD8A 2P13A 1W1KA 1SB3B 4OALA 1WVEA 2VFUA 2Y4GA 5FXEA 3EUB3 3DQ0A 3S1DA 1MBTA 2VFTA 3ETRB 5HQXA 3VTEA 2I0KA 5AE3A 5FXPA 4PVEA 1N5XA 3TX1A 5FXDA 2O3GA 3AM9A 2NQWA 3KJMA 4ZOHB 5I1VA 1FIQB 3NS1B 1VAOA 1DIIA 3D2DA 5HMRA 1N62C 2PLIA 3NVWB 2Y3RA 4PWBA 1ZR6A 4BC9A 2MBRA 5AE2A 2VFRA 1W1JA 4HG0A 5K8EA 1JROA 4EC3A 1I19A 2QPMA 3HRDC 2W55A 3HSUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I99 A;  5ADZ A;  2P4P A;  1N61 C;  2AXR A;  2EXR A;  1E8F A;  1QLU A;  2Q4W A;  2VFS A;  4ML8 A;  2W3S A;  2BVH A;  2YVS A;  2Q85 A;  2E3T A;  1WYG A;  1AHZ A;  4BBY A;  5HHZ A;  4BCA A;  1FFU C;  3W8X A;  1E0Y A;  1FO4 A;  3AMZ A;  4JB1 A;  1HSK A;  2BVG A;  1W1Q A;  3AN1 A;  4BC7 A;  2R8D A;  1AHV A;  2RK5 A;  3LAE A;  4O95 A;  4XLO A;  1N63 C;  3LLB A;  1E8H A;  1RM6 B;  3PM9 A;  3JS8 A;  4PYT A;  1MBB A;  2BVF A;  1W1M A;  5FXF A;  2VAO A;  1E8G A;  1VDV A;  5AE1 A;  3B9J B;  3NVV B;  1W1O A;  2W54 A;  1QLT A;  3NVY B;  1W1R A;  1JRP A;  3DED A;  1N60 C;  2GQT A;  2OAI A;  3SR6 B;  2P3H A;  2VFV A;  2QKN A;  4JAY A;  1W1L A;  5G5G B;  4MLA A;  1N5W C;  2GQU A;  3BW7 A;  1AHU A;  1V97 A;  1DIQ A;  3NVZ B;  2W3R A;  3W8Z A;  5G5H B;  1ZXI C;  1T3Q C;  1UXY A;  2PLS A;  1W1S A;  1WVF A;  3NRZ B;  3S1F A;  3C0P A;  3S1E A;  2R2Z A;  1DZN A;  3W8W A;  1F0X A;  3S1C A;  1FFV C;  2P13 A;  1W1K A;  1SB3 B;  4OAL A;  1WVE A;  2VFU A;  5FXE A;  3EUB 3;  3DQ0 A;  3S1D A;  1MBT A;  2VFT A;  3ETR B;  5HQX A;  2I0K A;  5AE3 A;  5FXP A;  1N5X A;  3TX1 A;  5FXD A;  2O3G A;  3AM9 A;  2NQW A;  3KJM A;  4ZOH B;  1FIQ B;  3NS1 B;  1VAO A;  1DII A;  5HMR A;  1N62 C;  2PLI A;  3NVW B;  1ZR6 A;  4BC9 A;  2MBR A;  5AE2 A;  2VFR A;  1W1J A;  4HG0 A;  1JRO A;  1I19 A;  2QPM A;  3HRD C;  2W55 A; 
#chains in the Genus database with same CATH topology
 3I99 A;  5ADZ A;  2P4P A;  1N61 C;  2Y08 A;  2AXR A;  2EXR A;  4DNS A;  2UUV A;  1E8F A;  1QLU A;  2Q4W A;  2VFS A;  4PZF A;  4ML8 A;  2W3S A;  3D2H A;  4PVH A;  2BVH A;  2YVS A;  3FW9 A;  3D2J A;  2Q85 A;  2E3T A;  1WYG A;  1AHZ A;  4BBY A;  5HHZ A;  4BCA A;  1FFU C;  3W8X A;  1E0Y A;  1FO4 A;  3AMZ A;  4JB1 A;  1HSK A;  3GSY A;  2BVG A;  1W1Q A;  3AN1 A;  4BC7 A;  2R8D A;  2IPI A;  1AHV A;  2RK5 A;  3LAE A;  3RJ8 A;  4O95 A;  4XLO A;  1N63 C;  3LLB A;  1E8H A;  1RM6 B;  2Y3S A;  3PM9 A;  3JS8 A;  4PYT A;  5I1W A;  1MBB A;  2BVF A;  2WDW A;  1W1M A;  5FXF A;  2VAO A;  5D79 A;  1E8G A;  2UUU A;  1VDV A;  3FWA A;  5AE1 A;  3B9J B;  3NVV B;  1W1O A;  2W54 A;  3FW8 A;  1QLT A;  3NVY B;  4PVJ A;  1W1R A;  5AWV A;  1JRP A;  3DED A;  1N60 C;  3POP A;  5L6F A;  2GQT A;  2OAI A;  3SR6 B;  2P3H A;  2VFV A;  2QKN A;  4JAY A;  1W1L A;  5G5G B;  3TSH A;  4MLA A;  1N5W C;  3RJA A;  2GQU A;  3BW7 A;  1AHU A;  1V97 A;  4PVK A;  3TSJ A;  1DIQ A;  3NVZ B;  2W3R A;  3W8Z A;  5G5H B;  1ZXI C;  1T3Q C;  1UXY A;  2PLS A;  5L6G A;  1W1S A;  1WVF A;  3NRZ B;  4PWC A;  3S1F A;  3FW7 A;  3C0P A;  3S1E A;  2R2Z A;  3PQB A;  1DZN A;  3W8W A;  1F0X A;  3S1C A;  1FFV C;  4UD8 A;  2P13 A;  1W1K A;  1SB3 B;  4OAL A;  1WVE A;  2VFU A;  2Y4G A;  5FXE A;  3EUB 3;  3DQ0 A;  3S1D A;  1MBT A;  2VFT A;  3ETR B;  5HQX A;  3VTE A;  2I0K A;  5AE3 A;  5FXP A;  4PVE A;  1N5X A;  3TX1 A;  5FXD A;  2O3G A;  3AM9 A;  2NQW A;  3KJM A;  4ZOH B;  5I1V A;  1FIQ B;  3NS1 B;  1VAO A;  1DII A;  3D2D A;  5HMR A;  1N62 C;  2PLI A;  3NVW B;  2Y3R A;  4PWB A;  1ZR6 A;  4BC9 A;  2MBR A;  5AE2 A;  2VFR A;  1W1J A;  4HG0 A;  5K8E A;  1JRO A;  4EC3 A;  1I19 A;  2QPM A;  3HRD C;  2W55 A;  3HSU A; 
#chains in the Genus database with same CATH homology
 3I99 A;  5ADZ A;  2P4P A;  1N61 C;  2Y08 A;  2AXR A;  2EXR A;  4DNS A;  2UUV A;  1E8F A;  1QLU A;  2Q4W A;  2VFS A;  4PZF A;  4ML8 A;  2W3S A;  3D2H A;  4PVH A;  2BVH A;  2YVS A;  3FW9 A;  3D2J A;  2Q85 A;  2E3T A;  1WYG A;  1AHZ A;  4BBY A;  5HHZ A;  4BCA A;  1FFU C;  3W8X A;  1E0Y A;  1FO4 A;  3AMZ A;  4JB1 A;  1HSK A;  3GSY A;  2BVG A;  1W1Q A;  3AN1 A;  4BC7 A;  2R8D A;  2IPI A;  1AHV A;  2RK5 A;  3LAE A;  3RJ8 A;  4O95 A;  4XLO A;  1N63 C;  3LLB A;  1E8H A;  1RM6 B;  2Y3S A;  3PM9 A;  3JS8 A;  4PYT A;  5I1W A;  1MBB A;  2BVF A;  2WDW A;  1W1M A;  5FXF A;  2VAO A;  5D79 A;  1E8G A;  2UUU A;  1VDV A;  3FWA A;  5AE1 A;  3B9J B;  3NVV B;  1W1O A;  2W54 A;  3FW8 A;  1QLT A;  3NVY B;  4PVJ A;  1W1R A;  5AWV A;  1JRP A;  3DED A;  1N60 C;  3POP A;  5L6F A;  2GQT A;  2OAI A;  3SR6 B;  2P3H A;  2VFV A;  2QKN A;  4JAY A;  1W1L A;  5G5G B;  3TSH A;  4MLA A;  1N5W C;  3RJA A;  2GQU A;  3BW7 A;  1AHU A;  1V97 A;  4PVK A;  3TSJ A;  1DIQ A;  3NVZ B;  2W3R A;  3W8Z A;  5G5H B;  1ZXI C;  1T3Q C;  1UXY A;  2PLS A;  5L6G A;  1W1S A;  1WVF A;  3NRZ B;  4PWC A;  3S1F A;  3FW7 A;  3C0P A;  3S1E A;  2R2Z A;  3PQB A;  1DZN A;  3W8W A;  1F0X A;  3S1C A;  1FFV C;  4UD8 A;  2P13 A;  1W1K A;  1SB3 B;  4OAL A;  1WVE A;  2VFU A;  2Y4G A;  5FXE A;  3EUB 3;  3DQ0 A;  3S1D A;  1MBT A;  2VFT A;  3ETR B;  5HQX A;  3VTE A;  2I0K A;  5AE3 A;  5FXP A;  4PVE A;  1N5X A;  3TX1 A;  5FXD A;  2O3G A;  3AM9 A;  2NQW A;  3KJM A;  4ZOH B;  5I1V A;  1FIQ B;  3NS1 B;  1VAO A;  1DII A;  3D2D A;  5HMR A;  1N62 C;  2PLI A;  3NVW B;  2Y3R A;  4PWB A;  1ZR6 A;  4BC9 A;  2MBR A;  5AE2 A;  2VFR A;  1W1J A;  4HG0 A;  5K8E A;  1JRO A;  4EC3 A;  1I19 A;  2QPM A;  3HRD C;  2W55 A;  3HSU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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