2PLSA

Structural genomics, the crystal structure of the corc/hlyc transporter associated domain of a cbs domain protein from chlorobium tepidum tls
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
86
structure length
86
Chain Sequence
SNAVQREDGSWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENWRLEVIDMDSKRIDKVLATKID

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of the CorC/HlyC transporter associated domain of a CBS domain protein from Chlorobium tepidum TLS.
rcsb
molecule keywords CBS domain protein
molecule tags Structural genomics, unknown function
source organism Chlorobium tepidum tls
total genus 18
structure length 86
sequence length 86
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2007-04-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2plsA00
4MLAA 3LAEA 1V97A 2Q85A 4ML8A 1WYGA 1QLUA 1DIQA 1FIQB 4XLOA 3S1FA 5AE1A 2VFSA 1W1LA 3TX1A 1VDVA 3W8XA 2VFTA 1N60C 2BVFA 3AMZA 5G5HB 1VAOA 4PYTA 2W54A 3JS8A 1ZR6A 2PLIA 4BCAA 1MBBA 3DEDA 4JAYA 4OALA 3AN1A 2AXRA 5FXEA 3S1DA 2QKNA 3W8WA 5G5GB 2EXRA 5HQXA 3KJMA 2P3HA 1W1KA 4ZOHB 5HHZA 1F0XA 3C0PA 1E8GA 1E8HA 1N61C 1W1RA 1AHUA 2W3SA 1N63C 5FXDA 3HRDC 3AM9A 1QLTA 1RM6B 2QPMA 1N5XA 4JB1A 5ADZA 3PM9A 3B9JB 1N5WC 3DQ0A 1W1SA 2GQUA 5AE3A 2GQTA 2RK5A 3I99A 1FO4A 3ETRB 2VFVA 2BVGA 3S1CA 3BW7A 5AE2A 1AHVA 1HSKA 1W1MA 2PLSA 5FXFA 2OAIA 3S1EA 4BBYA 1I19A 2MBRA 5HMRA 4O95A 4BC7A 2W3RA 1E8FA 1DIIA 3EUB3 1W1OA 1W1QA 1ZXIC 3NS1B 1E0YA 4HG0A 1FFVC 1WVEA 2P13A 2VFRA 1AHZA 2P4PA 2W55A 1FFUC 2E3TA 2VFUA 2YVSA 2O3GA 2R2ZA 3NRZB 3NVZB 1N62C 2R8DA 1SB3B 2I0KA 1MBTA 2NQWA 2Q4WA 2BVHA 3SR6B 5FXPA 1WVFA 3NVYB 4BC9A 1UXYA 1JRPA 3W8ZA 3NVWB 1W1JA 3LLBA 1T3QC 3NVVB 2VAOA 1JROA 1DZNA
chains in the Genus database with same CATH superfamily
4MLAA 3LAEA 1V97A 2Q85A 4ML8A 1WYGA 1QLUA 4DNSA 2WDWA 1DIQA 1FIQB 4XLOA 3S1FA 3FW9A 5AE1A 2VFSA 3HSUA 1W1LA 3TX1A 1VDVA 3W8XA 3RJAA 2VFTA 1N60C 2BVFA 3AMZA 3TSHA 5G5HB 1VAOA 4PYTA 2W54A 5I1WA 3JS8A 1ZR6A 2PLIA 4BCAA 1MBBA 3DEDA 4JAYA 4OALA 3AN1A 3VTEA 2AXRA 3FWAA 5FXEA 3S1DA 2QKNA 3W8WA 5G5GB 3PQBA 2EXRA 5HQXA 3KJMA 2P3HA 1W1KA 4ZOHB 4PVJA 5HHZA 1F0XA 3C0PA 1E8GA 1E8HA 1N61C 1W1RA 1AHUA 2W3SA 1N63C 5FXDA 3HRDC 3GSYA 3D2JA 3AM9A 1QLTA 5D79A 1RM6B 2QPMA 1N5XA 4JB1A 3FW8A 4PZFA 5ADZA 3PM9A 3FW7A 3B9JB 1N5WC 3D2HA 3DQ0A 1W1SA 2GQUA 5AE3A 2GQTA 2RK5A 3I99A 1FO4A 3D2DA 3ETRB 2VFVA 3TSJA 2BVGA 3S1CA 3BW7A 5AE2A 1AHVA 1HSKA 1W1MA 5I1VA 2PLSA 5FXFA 2OAIA 3S1EA 4BBYA 1I19A 2MBRA 4PWCA 5L6FA 4PWBA 5HMRA 4O95A 4BC7A 2W3RA 2Y08A 1E8FA 1DIIA 3EUB3 1W1OA 2Y4GA 5AWVA 2Y3SA 1W1QA 1ZXIC 3NS1B 1E0YA 4HG0A 4PVEA 1FFVC 1WVEA 2P13A 2VFRA 1AHZA 2P4PA 2W55A 1FFUC 2E3TA 2VFUA 2YVSA 2O3GA 2R2ZA 3NRZB 3NVZB 1N62C 2R8DA 1SB3B 5K8EA 5L6GA 2I0KA 1MBTA 4PVHA 2NQWA 2Q4WA 2UUVA 2BVHA 2Y3RA 2IPIA 3SR6B 5FXPA 4PVKA 4UD8A 1WVFA 3NVYB 4BC9A 3RJ8A 1UXYA 1JRPA 3W8ZA 2UUUA 4EC3A 3NVWB 1W1JA 3LLBA 1T3QC 3POPA 3NVVB 2VAOA 1JROA 1DZNA
chains in the Genus database with same CATH topology
4MLAA 3LAEA 1V97A 2Q85A 4ML8A 1WYGA 1QLUA 4DNSA 2WDWA 1DIQA 1FIQB 4XLOA 3S1FA 3FW9A 5AE1A 2VFSA 3HSUA 1W1LA 3TX1A 1VDVA 3W8XA 3RJAA 2VFTA 1N60C 2BVFA 3AMZA 3TSHA 5G5HB 1VAOA 4PYTA 2W54A 5I1WA 3JS8A 1ZR6A 2PLIA 4BCAA 1MBBA 3DEDA 4JAYA 4OALA 3AN1A 3VTEA 2AXRA 3FWAA 5FXEA 3S1DA 2QKNA 3W8WA 5G5GB 3PQBA 2EXRA 5HQXA 3KJMA 2P3HA 1W1KA 4ZOHB 4PVJA 5HHZA 1F0XA 3C0PA 1E8GA 1E8HA 1N61C 1W1RA 1AHUA 2W3SA 1N63C 5FXDA 3HRDC 3GSYA 3D2JA 3AM9A 1QLTA 5D79A 1RM6B 2QPMA 1N5XA 4JB1A 3FW8A 4PZFA 5ADZA 3PM9A 3FW7A 3B9JB 1N5WC 3D2HA 3DQ0A 1W1SA 2GQUA 5AE3A 2GQTA 2RK5A 3I99A 1FO4A 3D2DA 3ETRB 2VFVA 3TSJA 2BVGA 3S1CA 3BW7A 5AE2A 1AHVA 1HSKA 1W1MA 5I1VA 2PLSA 5FXFA 2OAIA 3S1EA 4BBYA 1I19A 2MBRA 4PWCA 5L6FA 4PWBA 5HMRA 4O95A 4BC7A 2W3RA 2Y08A 1E8FA 1DIIA 3EUB3 1W1OA 2Y4GA 5AWVA 2Y3SA 1W1QA 1ZXIC 3NS1B 1E0YA 4HG0A 4PVEA 1FFVC 1WVEA 2P13A 2VFRA 1AHZA 2P4PA 2W55A 1FFUC 2E3TA 2VFUA 2YVSA 2O3GA 2R2ZA 3NRZB 3NVZB 1N62C 2R8DA 1SB3B 5K8EA 5L6GA 2I0KA 1MBTA 4PVHA 2NQWA 2Q4WA 2UUVA 2BVHA 2Y3RA 2IPIA 3SR6B 5FXPA 4PVKA 4UD8A 1WVFA 3NVYB 4BC9A 3RJ8A 1UXYA 1JRPA 3W8ZA 2UUUA 4EC3A 3NVWB 1W1JA 3LLBA 1T3QC 3POPA 3NVVB 2VAOA 1JROA 1DZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MLA A;  3LAE A;  1V97 A;  2Q85 A;  4ML8 A;  1WYG A;  1QLU A;  1DIQ A;  1FIQ B;  4XLO A;  3S1F A;  5AE1 A;  2VFS A;  1W1L A;  3TX1 A;  1VDV A;  3W8X A;  2VFT A;  1N60 C;  2BVF A;  3AMZ A;  5G5H B;  1VAO A;  4PYT A;  2W54 A;  3JS8 A;  1ZR6 A;  2PLI A;  4BCA A;  1MBB A;  3DED A;  4JAY A;  4OAL A;  3AN1 A;  2AXR A;  5FXE A;  3S1D A;  2QKN A;  3W8W A;  5G5G B;  2EXR A;  5HQX A;  3KJM A;  2P3H A;  1W1K A;  4ZOH B;  5HHZ A;  1F0X A;  3C0P A;  1E8G A;  1E8H A;  1N61 C;  1W1R A;  1AHU A;  2W3S A;  1N63 C;  5FXD A;  3HRD C;  3AM9 A;  1QLT A;  1RM6 B;  2QPM A;  1N5X A;  4JB1 A;  5ADZ A;  3PM9 A;  3B9J B;  1N5W C;  3DQ0 A;  1W1S A;  2GQU A;  5AE3 A;  2GQT A;  2RK5 A;  3I99 A;  1FO4 A;  3ETR B;  2VFV A;  2BVG A;  3S1C A;  3BW7 A;  5AE2 A;  1AHV A;  1HSK A;  1W1M A;  2PLS A;  5FXF A;  2OAI A;  3S1E A;  4BBY A;  1I19 A;  2MBR A;  5HMR A;  4O95 A;  4BC7 A;  2W3R A;  1E8F A;  1DII A;  3EUB 3;  1W1O A;  1W1Q A;  1ZXI C;  3NS1 B;  1E0Y A;  4HG0 A;  1FFV C;  1WVE A;  2P13 A;  2VFR A;  1AHZ A;  2P4P A;  2W55 A;  1FFU C;  2E3T A;  2VFU A;  2YVS A;  2O3G A;  2R2Z A;  3NRZ B;  3NVZ B;  1N62 C;  2R8D A;  1SB3 B;  2I0K A;  1MBT A;  2NQW A;  2Q4W A;  2BVH A;  3SR6 B;  5FXP A;  1WVF A;  3NVY B;  4BC9 A;  1UXY A;  1JRP A;  3W8Z A;  3NVW B;  1W1J A;  3LLB A;  1T3Q C;  3NVV B;  2VAO A;  1JRO A;  1DZN A; 
#chains in the Genus database with same CATH topology
 4MLA A;  3LAE A;  1V97 A;  2Q85 A;  4ML8 A;  1WYG A;  1QLU A;  4DNS A;  2WDW A;  1DIQ A;  1FIQ B;  4XLO A;  3S1F A;  3FW9 A;  5AE1 A;  2VFS A;  3HSU A;  1W1L A;  3TX1 A;  1VDV A;  3W8X A;  3RJA A;  2VFT A;  1N60 C;  2BVF A;  3AMZ A;  3TSH A;  5G5H B;  1VAO A;  4PYT A;  2W54 A;  5I1W A;  3JS8 A;  1ZR6 A;  2PLI A;  4BCA A;  1MBB A;  3DED A;  4JAY A;  4OAL A;  3AN1 A;  3VTE A;  2AXR A;  3FWA A;  5FXE A;  3S1D A;  2QKN A;  3W8W A;  5G5G B;  3PQB A;  2EXR A;  5HQX A;  3KJM A;  2P3H A;  1W1K A;  4ZOH B;  4PVJ A;  5HHZ A;  1F0X A;  3C0P A;  1E8G A;  1E8H A;  1N61 C;  1W1R A;  1AHU A;  2W3S A;  1N63 C;  5FXD A;  3HRD C;  3GSY A;  3D2J A;  3AM9 A;  1QLT A;  5D79 A;  1RM6 B;  2QPM A;  1N5X A;  4JB1 A;  3FW8 A;  4PZF A;  5ADZ A;  3PM9 A;  3FW7 A;  3B9J B;  1N5W C;  3D2H A;  3DQ0 A;  1W1S A;  2GQU A;  5AE3 A;  2GQT A;  2RK5 A;  3I99 A;  1FO4 A;  3D2D A;  3ETR B;  2VFV A;  3TSJ A;  2BVG A;  3S1C A;  3BW7 A;  5AE2 A;  1AHV A;  1HSK A;  1W1M A;  5I1V A;  2PLS A;  5FXF A;  2OAI A;  3S1E A;  4BBY A;  1I19 A;  2MBR A;  4PWC A;  5L6F A;  4PWB A;  5HMR A;  4O95 A;  4BC7 A;  2W3R A;  2Y08 A;  1E8F A;  1DII A;  3EUB 3;  1W1O A;  2Y4G A;  5AWV A;  2Y3S A;  1W1Q A;  1ZXI C;  3NS1 B;  1E0Y A;  4HG0 A;  4PVE A;  1FFV C;  1WVE A;  2P13 A;  2VFR A;  1AHZ A;  2P4P A;  2W55 A;  1FFU C;  2E3T A;  2VFU A;  2YVS A;  2O3G A;  2R2Z A;  3NRZ B;  3NVZ B;  1N62 C;  2R8D A;  1SB3 B;  5K8E A;  5L6G A;  2I0K A;  1MBT A;  4PVH A;  2NQW A;  2Q4W A;  2UUV A;  2BVH A;  2Y3R A;  2IPI A;  3SR6 B;  5FXP A;  4PVK A;  4UD8 A;  1WVF A;  3NVY B;  4BC9 A;  3RJ8 A;  1UXY A;  1JRP A;  3W8Z A;  2UUU A;  4EC3 A;  3NVW B;  1W1J A;  3LLB A;  1T3Q C;  3POP A;  3NVV B;  2VAO A;  1JRO A;  1DZN A; 
#chains in the Genus database with same CATH homology
 4MLA A;  3LAE A;  1V97 A;  2Q85 A;  4ML8 A;  1WYG A;  1QLU A;  4DNS A;  2WDW A;  1DIQ A;  1FIQ B;  4XLO A;  3S1F A;  3FW9 A;  5AE1 A;  2VFS A;  3HSU A;  1W1L A;  3TX1 A;  1VDV A;  3W8X A;  3RJA A;  2VFT A;  1N60 C;  2BVF A;  3AMZ A;  3TSH A;  5G5H B;  1VAO A;  4PYT A;  2W54 A;  5I1W A;  3JS8 A;  1ZR6 A;  2PLI A;  4BCA A;  1MBB A;  3DED A;  4JAY A;  4OAL A;  3AN1 A;  3VTE A;  2AXR A;  3FWA A;  5FXE A;  3S1D A;  2QKN A;  3W8W A;  5G5G B;  3PQB A;  2EXR A;  5HQX A;  3KJM A;  2P3H A;  1W1K A;  4ZOH B;  4PVJ A;  5HHZ A;  1F0X A;  3C0P A;  1E8G A;  1E8H A;  1N61 C;  1W1R A;  1AHU A;  2W3S A;  1N63 C;  5FXD A;  3HRD C;  3GSY A;  3D2J A;  3AM9 A;  1QLT A;  5D79 A;  1RM6 B;  2QPM A;  1N5X A;  4JB1 A;  3FW8 A;  4PZF A;  5ADZ A;  3PM9 A;  3FW7 A;  3B9J B;  1N5W C;  3D2H A;  3DQ0 A;  1W1S A;  2GQU A;  5AE3 A;  2GQT A;  2RK5 A;  3I99 A;  1FO4 A;  3D2D A;  3ETR B;  2VFV A;  3TSJ A;  2BVG A;  3S1C A;  3BW7 A;  5AE2 A;  1AHV A;  1HSK A;  1W1M A;  5I1V A;  2PLS A;  5FXF A;  2OAI A;  3S1E A;  4BBY A;  1I19 A;  2MBR A;  4PWC A;  5L6F A;  4PWB A;  5HMR A;  4O95 A;  4BC7 A;  2W3R A;  2Y08 A;  1E8F A;  1DII A;  3EUB 3;  1W1O A;  2Y4G A;  5AWV A;  2Y3S A;  1W1Q A;  1ZXI C;  3NS1 B;  1E0Y A;  4HG0 A;  4PVE A;  1FFV C;  1WVE A;  2P13 A;  2VFR A;  1AHZ A;  2P4P A;  2W55 A;  1FFU C;  2E3T A;  2VFU A;  2YVS A;  2O3G A;  2R2Z A;  3NRZ B;  3NVZ B;  1N62 C;  2R8D A;  1SB3 B;  5K8E A;  5L6G A;  2I0K A;  1MBT A;  4PVH A;  2NQW A;  2Q4W A;  2UUV A;  2BVH A;  2Y3R A;  2IPI A;  3SR6 B;  5FXP A;  4PVK A;  4UD8 A;  1WVF A;  3NVY B;  4BC9 A;  3RJ8 A;  1UXY A;  1JRP A;  3W8Z A;  2UUU A;  4EC3 A;  3NVW B;  1W1J A;  3LLB A;  1T3Q C;  3POP A;  3NVV B;  2VAO A;  1JRO A;  1DZN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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