2QKN | Genus

Total Genus 171

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	171
sequence length	502
structure length	496
Chain Sequence	PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Zea mays
publication title	Phenyl- and benzylurea cytokinins as competitive inhibitors of cytokinin oxidase/dehydrogenase: a structural study. pubmed doi rcsb
molecule keywords	Cytokinin dehydrogenase 1
total genus	171
structure length	496
sequence length	502
ec nomenclature	ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date	2007-07-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF09265	Cytokin-bind	Cytokinin dehydrogenase 1, FAD and cytokinin binding

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	2qknA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	2qknA02
3.40.462.10	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	FAD-linked oxidases, C-terminal domain	2qknA03

1V97A 4PVEA 3SR6B 3EUB3 5G5HB 3DQ0A 2AXRA 2BVGA 3AMZA 2YVSA 3AN1A 1F0XA 3D2DA 1AHZA 3C0PA 1I19A 1ZXIC 1AHUA 4PWBA 1UXYA 3W8ZA 1MBBA 4JB1A 4XLOA 3W8XA 3NS1B 2BVFA 2OAIA 1VAOA 1W1OA 3B9JB 2NQWA 4PVHA 4BCAA 2PLIA 4HG0A 2VFRA 5D79A 5FXEA 3DEDA 1N5WC 4BC9A 1W1LA 2E3TA 2VFTA 3BW7A 2R8DA 2PLSA 2QPMA 1W1SA 3FWAA 4O95A 2P13A 1N62C 1HSKA 2Q4WA 1N5XA 1W1QA 1ZR6A 1AHVA 2GQUA 3TSHA 1FO4A 3GSYA 4BC7A 3NVWB 3TX1A 3KJMA 2VFSA 1JRPA 1W1RA 1T3QC 3ETRB 3LAEA 3AM9A 4JAYA 2O3GA 2VFUA 3S1DA 1QLUA 3LLBA 5FXFA 1N63C 2W3SA 2QKNA 4PYTA 5FXPA 5AE1A 1DZNA 3D2JA 2R2ZA 1E0YA 1N60C 1W1JA 3NVZB 1WVFA 2EXRA 1N61C 2W3RA 1QLTA 2W55A 2P3HA 2I0KA 2P4PA 4BBYA 1W1KA 4ZOHB 1RM6B 3FW9A 1DIIA 4PVKA 4PVJA 2MBRA 3NRZB 3S1CA 1WVEA 2VAOA 1WYGA 1DIQA 4MLAA 5AE3A 3PM9A 5AE2A 3NVYB 3S1EA 1JROA 2RK5A 4ML8A 5HMRA 3W8WA 2Q85A 4DNSA 1SB3B 1W1MA 1VDVA 1E8FA 4PWCA 4UD8A 3TSJA 3I99A 3FW7A 2BVHA 5HQXA 1MBTA 5FXDA 3D2HA 3HRDC 5HHZA 3FW8A 1FFVC 5G5GB 2VFVA 4PZFA 3JS8A 3NVVB 3VTEA 5ADZA 2GQTA 1E8HA 1E8GA 4EC3A 2W54A 4OALA 1FIQB 3S1FA 1FFUC
chains in the Genus database with same CATH superfamily

1V97A 4PVEA 3SR6B 2Y3RA 3EUB3 5G5HB 3DQ0A 2AXRA 2BVGA 3AMZA 2YVSA 3AN1A 1F0XA 3D2DA 5L6FA 1AHZA 3C0PA 1I19A 1ZXIC 1AHUA 4PWBA 1UXYA 3W8ZA 1MBBA 4JB1A 3EJBB 4XLOA 3W8XA 3NS1B 2BVFA 2OAIA 1VAOA 1W1OA 3B9JB 2NQWA 3EJDB 4PVHA 4BCAA 2PLIA 2Y4GA 4HG0A 2VFRA 5D79A 2Y08A 5FXEA 3DEDA 1N5WC 4BC9A 1W1LA 2E3TA 2VFTA 3BW7A 2R8DA 2PLSA 3PQBA 2QPMA 1W1SA 3FWAA 4O95A 2P13A 1N62C 1HSKA 2Q4WA 1N5XA 1W1QA 1ZR6A 1AHVA 2GQUA 3TSHA 1FO4A 3RJ8A 3GSYA 3NVWB 4BC7A 3TX1A 3KJMA 5I1WA 2VFSA 1JRPA 1W1RA 1T3QC 3ETRB 3LAEA 3AM9A 4JAYA 2O3GA 2VFUA 2UUUA 3S1DA 1QLUA 5L6GA 3LLBA 5FXFA 2IPIA 1N63C 2W3SA 2QKNA 3POPA 4PYTA 5FXPA 5AE1A 1DZNA 3D2JA 2R2ZA 1E0YA 1N60C 1W1JA 3NVZB 1WVFA 2Y3SA 2EXRA 1N61C 2W3RA 1QLTA 2W55A 2P3HA 2WDWA 2I0KA 2P4PA 4BBYA 1W1KA 4ZOHB 1RM6B 3FW9A 1DIIA 4PVKA 4PVJA 2MBRA 3NRZB 3S1CA 1WVEA 2VAOA 1WYGA 1DIQA 4MLAA 5AE3A 3PM9A 5AE2A 3NVYB 3S1EA 3RJAA 1JROA 5AWVA 2RK5A 4ML8A 5HMRA 3W8WA 2Q85A 4DNSA 1SB3B 5I1VA 1W1MA 1VDVA 1E8FA 4PWCA 4UD8A 5K8EA 3TSJA 3I99A 3FW7A 2BVHA 5HQXA 1MBTA 5FXDA 2UUVA 3D2HA 3HRDC 5HHZA 3FW8A 1FFVC 5G5GB 2VFVA 4PZFA 3JS8A 3NVVB 3VTEA 5ADZA 2GQTA 1E8HA 1E8GA 4EC3A 3EJEB 2W54A 4OALA 3HSUA 1FIQB 3S1FA 1FFUC
chains in the Genus database with same CATH topology

1V97A 4PVEA 3SR6B 2Y3RA 3EUB3 5G5HB 3DQ0A 2AXRA 2BVGA 3AMZA 2YVSA 3AN1A 1F0XA 3D2DA 5L6FA 1AHZA 3C0PA 1I19A 1ZXIC 1AHUA 4PWBA 1UXYA 3W8ZA 1MBBA 4JB1A 4XLOA 3W8XA 3NS1B 2BVFA 2OAIA 1VAOA 1W1OA 3B9JB 2NQWA 4PVHA 4BCAA 2PLIA 2Y4GA 4HG0A 2VFRA 5D79A 2Y08A 5FXEA 3DEDA 1N5WC 4BC9A 1W1LA 2E3TA 2VFTA 3BW7A 2R8DA 2PLSA 3PQBA 2QPMA 1W1SA 3FWAA 4O95A 2P13A 1N62C 1HSKA 2Q4WA 1N5XA 1W1QA 1ZR6A 1AHVA 2GQUA 3TSHA 1FO4A 3RJ8A 3GSYA 4BC7A 3NVWB 3TX1A 3KJMA 5I1WA 2VFSA 1JRPA 1W1RA 1T3QC 3ETRB 3LAEA 3AM9A 4JAYA 2O3GA 2VFUA 2UUUA 3S1DA 1QLUA 5L6GA 3LLBA 5FXFA 2IPIA 1N63C 2W3SA 2QKNA 3POPA 4PYTA 5FXPA 5AE1A 1DZNA 3D2JA 2R2ZA 1E0YA 1N60C 1W1JA 3NVZB 1WVFA 2Y3SA 2EXRA 1N61C 2W3RA 1QLTA 2W55A 2P3HA 2WDWA 2I0KA 2P4PA 4BBYA 1W1KA 4ZOHB 1RM6B 3FW9A 1DIIA 4PVKA 4PVJA 2MBRA 3NRZB 3S1CA 1WVEA 2VAOA 1WYGA 1DIQA 4MLAA 5AE3A 3PM9A 5AE2A 3NVYB 3S1EA 3RJAA 1JROA 5AWVA 2RK5A 4ML8A 5HMRA 3W8WA 2Q85A 4DNSA 1SB3B 5I1VA 1W1MA 1VDVA 1E8FA 4PWCA 4UD8A 5K8EA 3TSJA 3I99A 3FW7A 2BVHA 5HQXA 1MBTA 5FXDA 2UUVA 3D2HA 3HRDC 5HHZA 3FW8A 1FFVC 5G5GB 2VFVA 4PZFA 3JS8A 3NVVB 3VTEA 5ADZA 2GQTA 1E8HA 1E8GA 4EC3A 2W54A 4OALA 3HSUA 1FIQB 3S1FA 1FFUC
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1V97 A;  4PVE A;  3SR6 B;  3EUB 3;  5G5H B;  3DQ0 A;  2AXR A;  2BVG A;  3AMZ A;  2YVS A;  3AN1 A;  1F0X A;  3D2D A;  1AHZ A;  3C0P A;  1I19 A;  1ZXI C;  1AHU A;  4PWB A;  1UXY A;  3W8Z A;  1MBB A;  4JB1 A;  4XLO A;  3W8X A;  3NS1 B;  2BVF A;  2OAI A;  1VAO A;  1W1O A;  3B9J B;  2NQW A;  4PVH A;  4BCA A;  2PLI A;  4HG0 A;  2VFR A;  5D79 A;  5FXE A;  3DED A;  1N5W C;  4BC9 A;  1W1L A;  2E3T A;  2VFT A;  3BW7 A;  2R8D A;  2PLS A;  2QPM A;  1W1S A;  3FWA A;  4O95 A;  2P13 A;  1N62 C;  1HSK A;  2Q4W A;  1N5X A;  1W1Q A;  1ZR6 A;  1AHV A;  2GQU A;  3TSH A;  1FO4 A;  3GSY A;  4BC7 A;  3NVW B;  3TX1 A;  3KJM A;  2VFS A;  1JRP A;  1W1R A;  1T3Q C;  3ETR B;  3LAE A;  3AM9 A;  4JAY A;  2O3G A;  2VFU A;  3S1D A;  1QLU A;  3LLB A;  5FXF A;  1N63 C;  2W3S A;  2QKN A;  4PYT A;  5FXP A;  5AE1 A;  1DZN A;  3D2J A;  2R2Z A;  1E0Y A;  1N60 C;  1W1J A;  3NVZ B;  1WVF A;  2EXR A;  1N61 C;  2W3R A;  1QLT A;  2W55 A;  2P3H A;  2I0K A;  2P4P A;  4BBY A;  1W1K A;  4ZOH B;  1RM6 B;  3FW9 A;  1DII A;  4PVK A;  4PVJ A;  2MBR A;  3NRZ B;  3S1C A;  1WVE A;  2VAO A;  1WYG A;  1DIQ A;  4MLA A;  5AE3 A;  3PM9 A;  5AE2 A;  3NVY B;  3S1E A;  1JRO A;  2RK5 A;  4ML8 A;  5HMR A;  3W8W A;  2Q85 A;  4DNS A;  1SB3 B;  1W1M A;  1VDV A;  1E8F A;  4PWC A;  4UD8 A;  3TSJ A;  3I99 A;  3FW7 A;  2BVH A;  5HQX A;  1MBT A;  5FXD A;  3D2H A;  3HRD C;  5HHZ A;  3FW8 A;  1FFV C;  5G5G B;  2VFV A;  4PZF A;  3JS8 A;  3NVV B;  3VTE A;  5ADZ A;  2GQT A;  1E8H A;  1E8G A;  4EC3 A;  2W54 A;  4OAL A;  1FIQ B;  3S1F A;  1FFU C; 
#chains in the Genus database with same CATH topology
 1V97 A;  4PVE A;  3SR6 B;  2Y3R A;  3EUB 3;  5G5H B;  3DQ0 A;  2AXR A;  2BVG A;  3AMZ A;  2YVS A;  3AN1 A;  1F0X A;  3D2D A;  5L6F A;  1AHZ A;  3C0P A;  1I19 A;  1ZXI C;  1AHU A;  4PWB A;  1UXY A;  3W8Z A;  1MBB A;  4JB1 A;  3EJB B;  4XLO A;  3W8X A;  3NS1 B;  2BVF A;  2OAI A;  1VAO A;  1W1O A;  3B9J B;  2NQW A;  3EJD B;  4PVH A;  4BCA A;  2PLI A;  2Y4G A;  4HG0 A;  2VFR A;  5D79 A;  2Y08 A;  5FXE A;  3DED A;  1N5W C;  4BC9 A;  1W1L A;  2E3T A;  2VFT A;  3BW7 A;  2R8D A;  2PLS A;  3PQB A;  2QPM A;  1W1S A;  3FWA A;  4O95 A;  2P13 A;  1N62 C;  1HSK A;  2Q4W A;  1N5X A;  1W1Q A;  1ZR6 A;  1AHV A;  2GQU A;  3TSH A;  1FO4 A;  3RJ8 A;  3GSY A;  3NVW B;  4BC7 A;  3TX1 A;  3KJM A;  5I1W A;  2VFS A;  1JRP A;  1W1R A;  1T3Q C;  3ETR B;  3LAE A;  3AM9 A;  4JAY A;  2O3G A;  2VFU A;  2UUU A;  3S1D A;  1QLU A;  5L6G A;  3LLB A;  5FXF A;  2IPI A;  1N63 C;  2W3S A;  2QKN A;  3POP A;  4PYT A;  5FXP A;  5AE1 A;  1DZN A;  3D2J A;  2R2Z A;  1E0Y A;  1N60 C;  1W1J A;  3NVZ B;  1WVF A;  2Y3S A;  2EXR A;  1N61 C;  2W3R A;  1QLT A;  2W55 A;  2P3H A;  2WDW A;  2I0K A;  2P4P A;  4BBY A;  1W1K A;  4ZOH B;  1RM6 B;  3FW9 A;  1DII A;  4PVK A;  4PVJ A;  2MBR A;  3NRZ B;  3S1C A;  1WVE A;  2VAO A;  1WYG A;  1DIQ A;  4MLA A;  5AE3 A;  3PM9 A;  5AE2 A;  3NVY B;  3S1E A;  3RJA A;  1JRO A;  5AWV A;  2RK5 A;  4ML8 A;  5HMR A;  3W8W A;  2Q85 A;  4DNS A;  1SB3 B;  5I1V A;  1W1M A;  1VDV A;  1E8F A;  4PWC A;  4UD8 A;  5K8E A;  3TSJ A;  3I99 A;  3FW7 A;  2BVH A;  5HQX A;  1MBT A;  5FXD A;  2UUV A;  3D2H A;  3HRD C;  5HHZ A;  3FW8 A;  1FFV C;  5G5G B;  2VFV A;  4PZF A;  3JS8 A;  3NVV B;  3VTE A;  5ADZ A;  2GQT A;  1E8H A;  1E8G A;  4EC3 A;  3EJE B;  2W54 A;  4OAL A;  3HSU A;  1FIQ B;  3S1F A;  1FFU C; 
#chains in the Genus database with same CATH homology
 1V97 A;  4PVE A;  3SR6 B;  2Y3R A;  3EUB 3;  5G5H B;  3DQ0 A;  2AXR A;  2BVG A;  3AMZ A;  2YVS A;  3AN1 A;  1F0X A;  3D2D A;  5L6F A;  1AHZ A;  3C0P A;  1I19 A;  1ZXI C;  1AHU A;  4PWB A;  1UXY A;  3W8Z A;  1MBB A;  4JB1 A;  4XLO A;  3W8X A;  3NS1 B;  2BVF A;  2OAI A;  1VAO A;  1W1O A;  3B9J B;  2NQW A;  4PVH A;  4BCA A;  2PLI A;  2Y4G A;  4HG0 A;  2VFR A;  5D79 A;  2Y08 A;  5FXE A;  3DED A;  1N5W C;  4BC9 A;  1W1L A;  2E3T A;  2VFT A;  3BW7 A;  2R8D A;  2PLS A;  3PQB A;  2QPM A;  1W1S A;  3FWA A;  4O95 A;  2P13 A;  1N62 C;  1HSK A;  2Q4W A;  1N5X A;  1W1Q A;  1ZR6 A;  1AHV A;  2GQU A;  3TSH A;  1FO4 A;  3RJ8 A;  3GSY A;  4BC7 A;  3NVW B;  3TX1 A;  3KJM A;  5I1W A;  2VFS A;  1JRP A;  1W1R A;  1T3Q C;  3ETR B;  3LAE A;  3AM9 A;  4JAY A;  2O3G A;  2VFU A;  2UUU A;  3S1D A;  1QLU A;  5L6G A;  3LLB A;  5FXF A;  2IPI A;  1N63 C;  2W3S A;  2QKN A;  3POP A;  4PYT A;  5FXP A;  5AE1 A;  1DZN A;  3D2J A;  2R2Z A;  1E0Y A;  1N60 C;  1W1J A;  3NVZ B;  1WVF A;  2Y3S A;  2EXR A;  1N61 C;  2W3R A;  1QLT A;  2W55 A;  2P3H A;  2WDW A;  2I0K A;  2P4P A;  4BBY A;  1W1K A;  4ZOH B;  1RM6 B;  3FW9 A;  1DII A;  4PVK A;  4PVJ A;  2MBR A;  3NRZ B;  3S1C A;  1WVE A;  2VAO A;  1WYG A;  1DIQ A;  4MLA A;  5AE3 A;  3PM9 A;  5AE2 A;  3NVY B;  3S1E A;  3RJA A;  1JRO A;  5AWV A;  2RK5 A;  4ML8 A;  5HMR A;  3W8W A;  2Q85 A;  4DNS A;  1SB3 B;  5I1V A;  1W1M A;  1VDV A;  1E8F A;  4PWC A;  4UD8 A;  5K8E A;  3TSJ A;  3I99 A;  3FW7 A;  2BVH A;  5HQX A;  1MBT A;  5FXD A;  2UUV A;  3D2H A;  3HRD C;  5HHZ A;  3FW8 A;  1FFV C;  5G5G B;  2VFV A;  4PZF A;  3JS8 A;  3NVV B;  3VTE A;  5ADZ A;  2GQT A;  1E8H A;  1E8G A;  4EC3 A;  2W54 A;  4OAL A;  3HSU A;  1FIQ B;  3S1F A;  1FFU C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2QKNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations