2QPM | Genus

Total Genus 171

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	171
sequence length	502
structure length	496
Chain Sequence	PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRSFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYAARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__628895463465945__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__628895463465945__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2QPM/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__628895463465945__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"628895463465945","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2QPM/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__628895463465945__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Zea mays
publication title	Phenyl- and benzylurea cytokinins as competitive inhibitors of cytokinin oxidase/dehydrogenase: a structural study. pubmed doi rcsb
molecule keywords	Cytokinin dehydrogenase 1
total genus	171
structure length	496
sequence length	502
ec nomenclature	ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date	2007-07-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF09265	Cytokin-bind	Cytokinin dehydrogenase 1, FAD and cytokinin binding

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	2qpmA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	2qpmA02
3.40.462.10	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	FAD-linked oxidases, C-terminal domain	2qpmA03

2GQUA 2W54A 2GQTA 2Q4WA 5HMRA 3B9JB 2YVSA 4PWBA 1FO4A 3NVVB 3HRDC 3ETRB 2VFVA 1ZXIC 1N63C 3NVZB 4PWCA 5G5HB 3FWAA 2VFRA 3S1EA 2W3RA 3VTEA 4OALA 1ZR6A 4BC9A 1DIIA 4JAYA 3W8XA 1W1KA 2W3SA 1W1QA 2VAOA 3FW7A 4EC3A 3TSHA 1E8FA 2EXRA 3PM9A 1E0YA 3BW7A 1QLUA 1N5WC 3LAEA 3S1DA 3D2HA 2BVGA 4O95A 3DEDA 1UXYA 3JS8A 1N62C 1MBBA 3FW8A 4PVEA 1DIQA 3SR6B 4MLAA 1N5XA 2PLSA 2I0KA 1V97A 5HHZA 2BVHA 4ML8A 1VDVA 1W1RA 2QPMA 4BCAA 4HG0A 3S1FA 4PZFA 4DNSA 1W1OA 5AE1A 1N60C 1QLTA 4PVJA 1WYGA 5AE2A 1VAOA 1F0XA 1T3QC 3C0PA 5FXDA 3EUB3 5HQXA 2VFTA 2VFSA 4PYTA 3NVWB 1AHZA 5FXEA 5AE3A 4BC7A 3LLBA 1E8GA 3GSYA 2MBRA 1DZNA 3W8WA 2E3TA 1SB3B 2QKNA 3NVYB 5ADZA 2OAIA 1FFVC 3FW9A 4ZOHB 1FFUC 5FXPA 1E8HA 3TSJA 1W1MA 2O3GA 4JB1A 1JRPA 3AM9A 3AMZA 4UD8A 4PVKA 4PVHA 1N61C 1W1JA 2Q85A 2R8DA 2AXRA 3NS1B 1MBTA 1WVEA 1W1SA 1JROA 1HSKA 1AHUA 3D2DA 3NRZB 2W55A 1AHVA 2VFUA 2P13A 3S1CA 2P4PA 3AN1A 4XLOA 3W8ZA 1FIQB 3I99A 3D2JA 5D79A 5FXFA 3DQ0A 5G5GB 2PLIA 1W1LA 2BVFA 3KJMA 3TX1A 2NQWA 1I19A 2R2ZA 4BBYA 2P3HA 1RM6B 2RK5A 1WVFA
chains in the Genus database with same CATH superfamily

2GQUA 5L6FA 2W54A 2GQTA 3POPA 2Q4WA 5HMRA 3B9JB 2YVSA 3NVVB 4PWBA 1FO4A 3HRDC 3PQBA 3ETRB 2VFVA 1ZXIC 1N63C 3NVZB 4PWCA 5G5HB 3FWAA 2VFRA 3S1EA 2W3RA 3VTEA 4OALA 1ZR6A 4BC9A 2IPIA 1DIIA 4JAYA 3W8XA 1W1KA 2W3SA 1W1QA 2VAOA 3FW7A 4EC3A 3TSHA 1E8FA 2EXRA 3PM9A 1E0YA 3BW7A 1QLUA 5I1WA 1N5WC 3LAEA 3S1DA 3D2HA 2BVGA 4O95A 3DEDA 1UXYA 3JS8A 1N62C 1MBBA 3FW8A 4PVEA 1DIQA 3SR6B 4MLAA 1N5XA 2PLSA 2I0KA 1V97A 5HHZA 2BVHA 4ML8A 1VDVA 1W1RA 2QPMA 4BCAA 4HG0A 3S1FA 4PZFA 3RJ8A 4DNSA 1W1OA 5AE1A 1N60C 1QLTA 3HSUA 4PVJA 1WYGA 5AE2A 1VAOA 1F0XA 1T3QC 2Y4GA 3C0PA 5FXDA 3EUB3 5HQXA 2VFTA 2VFSA 2UUVA 2Y3RA 4PYTA 3NVWB 1AHZA 5FXEA 5AE3A 4BC7A 3LLBA 1E8GA 3GSYA 2MBRA 1DZNA 3W8WA 2E3TA 3EJEB 1SB3B 2QKNA 5I1VA 3NVYB 3EJBB 5ADZA 2OAIA 1FFVC 3FW9A 4ZOHB 1FFUC 5FXPA 1E8HA 3TSJA 1W1MA 2O3GA 2WDWA 4JB1A 1JRPA 3AM9A 3AMZA 4UD8A 4PVKA 2Y3SA 4PVHA 1N61C 1W1JA 2Q85A 2R8DA 2AXRA 3NS1B 3EJDB 1MBTA 3RJAA 1WVEA 5L6GA 1W1SA 1JROA 1HSKA 1AHUA 3D2DA 3NRZB 2W55A 5AWVA 1AHVA 2VFUA 2P13A 3S1CA 2P4PA 3AN1A 4XLOA 3W8ZA 1FIQB 3I99A 3D2JA 5D79A 5FXFA 3DQ0A 5G5GB 2PLIA 1W1LA 2BVFA 3KJMA 3TX1A 2NQWA 1I19A 2R2ZA 4BBYA 2P3HA 5K8EA 1RM6B 2UUUA 2RK5A 2Y08A 1WVFA
chains in the Genus database with same CATH topology

2GQUA 5L6FA 2W54A 2GQTA 3POPA 2Q4WA 5HMRA 3B9JB 2YVSA 4PWBA 1FO4A 3NVVB 3HRDC 3PQBA 3ETRB 2VFVA 1ZXIC 1N63C 3NVZB 4PWCA 5G5HB 3FWAA 2VFRA 3S1EA 2W3RA 3VTEA 4OALA 1ZR6A 4BC9A 2IPIA 1DIIA 4JAYA 3W8XA 1W1KA 2W3SA 1W1QA 2VAOA 3FW7A 4EC3A 3TSHA 1E8FA 2EXRA 3PM9A 1E0YA 3BW7A 1QLUA 5I1WA 1N5WC 3LAEA 3S1DA 3D2HA 2BVGA 4O95A 3DEDA 1UXYA 3JS8A 1N62C 1MBBA 3FW8A 4PVEA 1DIQA 3SR6B 4MLAA 1N5XA 2PLSA 2I0KA 1V97A 5HHZA 2BVHA 4ML8A 1VDVA 1W1RA 2QPMA 4BCAA 4HG0A 3S1FA 4PZFA 3RJ8A 4DNSA 1W1OA 5AE1A 1N60C 1QLTA 3HSUA 4PVJA 1WYGA 5AE2A 1VAOA 1F0XA 1T3QC 2Y4GA 3C0PA 5FXDA 3EUB3 5HQXA 2VFTA 2VFSA 2UUVA 2Y3RA 4PYTA 3NVWB 1AHZA 5FXEA 5AE3A 4BC7A 3LLBA 1E8GA 3GSYA 2MBRA 1DZNA 3W8WA 2E3TA 1SB3B 2QKNA 5I1VA 3NVYB 5ADZA 2OAIA 1FFVC 3FW9A 4ZOHB 1FFUC 5FXPA 1E8HA 3TSJA 1W1MA 2O3GA 2WDWA 4JB1A 1JRPA 3AM9A 3AMZA 4UD8A 4PVKA 2Y3SA 4PVHA 1N61C 1W1JA 2Q85A 2R8DA 2AXRA 3NS1B 1MBTA 3RJAA 1WVEA 5L6GA 1W1SA 1JROA 1HSKA 1AHUA 3D2DA 3NRZB 2W55A 5AWVA 1AHVA 2VFUA 2P13A 3S1CA 2P4PA 3AN1A 4XLOA 3W8ZA 1FIQB 3I99A 3D2JA 5D79A 5FXFA 3DQ0A 5G5GB 2PLIA 1W1LA 2BVFA 3KJMA 3TX1A 2NQWA 1I19A 2R2ZA 4BBYA 2P3HA 5K8EA 1RM6B 2UUUA 2RK5A 2Y08A 1WVFA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2GQU A;  2W54 A;  2GQT A;  2Q4W A;  5HMR A;  3B9J B;  2YVS A;  4PWB A;  1FO4 A;  3NVV B;  3HRD C;  3ETR B;  2VFV A;  1ZXI C;  1N63 C;  3NVZ B;  4PWC A;  5G5H B;  3FWA A;  2VFR A;  3S1E A;  2W3R A;  3VTE A;  4OAL A;  1ZR6 A;  4BC9 A;  1DII A;  4JAY A;  3W8X A;  1W1K A;  2W3S A;  1W1Q A;  2VAO A;  3FW7 A;  4EC3 A;  3TSH A;  1E8F A;  2EXR A;  3PM9 A;  1E0Y A;  3BW7 A;  1QLU A;  1N5W C;  3LAE A;  3S1D A;  3D2H A;  2BVG A;  4O95 A;  3DED A;  1UXY A;  3JS8 A;  1N62 C;  1MBB A;  3FW8 A;  4PVE A;  1DIQ A;  3SR6 B;  4MLA A;  1N5X A;  2PLS A;  2I0K A;  1V97 A;  5HHZ A;  2BVH A;  4ML8 A;  1VDV A;  1W1R A;  2QPM A;  4BCA A;  4HG0 A;  3S1F A;  4PZF A;  4DNS A;  1W1O A;  5AE1 A;  1N60 C;  1QLT A;  4PVJ A;  1WYG A;  5AE2 A;  1VAO A;  1F0X A;  1T3Q C;  3C0P A;  5FXD A;  3EUB 3;  5HQX A;  2VFT A;  2VFS A;  4PYT A;  3NVW B;  1AHZ A;  5FXE A;  5AE3 A;  4BC7 A;  3LLB A;  1E8G A;  3GSY A;  2MBR A;  1DZN A;  3W8W A;  2E3T A;  1SB3 B;  2QKN A;  3NVY B;  5ADZ A;  2OAI A;  1FFV C;  3FW9 A;  4ZOH B;  1FFU C;  5FXP A;  1E8H A;  3TSJ A;  1W1M A;  2O3G A;  4JB1 A;  1JRP A;  3AM9 A;  3AMZ A;  4UD8 A;  4PVK A;  4PVH A;  1N61 C;  1W1J A;  2Q85 A;  2R8D A;  2AXR A;  3NS1 B;  1MBT A;  1WVE A;  1W1S A;  1JRO A;  1HSK A;  1AHU A;  3D2D A;  3NRZ B;  2W55 A;  1AHV A;  2VFU A;  2P13 A;  3S1C A;  2P4P A;  3AN1 A;  4XLO A;  3W8Z A;  1FIQ B;  3I99 A;  3D2J A;  5D79 A;  5FXF A;  3DQ0 A;  5G5G B;  2PLI A;  1W1L A;  2BVF A;  3KJM A;  3TX1 A;  2NQW A;  1I19 A;  2R2Z A;  4BBY A;  2P3H A;  1RM6 B;  2RK5 A;  1WVF A; 
#chains in the Genus database with same CATH topology
 2GQU A;  5L6F A;  2W54 A;  2GQT A;  3POP A;  2Q4W A;  5HMR A;  3B9J B;  2YVS A;  3NVV B;  4PWB A;  1FO4 A;  3HRD C;  3PQB A;  3ETR B;  2VFV A;  1ZXI C;  1N63 C;  3NVZ B;  4PWC A;  5G5H B;  3FWA A;  2VFR A;  3S1E A;  2W3R A;  3VTE A;  4OAL A;  1ZR6 A;  4BC9 A;  2IPI A;  1DII A;  4JAY A;  3W8X A;  1W1K A;  2W3S A;  1W1Q A;  2VAO A;  3FW7 A;  4EC3 A;  3TSH A;  1E8F A;  2EXR A;  3PM9 A;  1E0Y A;  3BW7 A;  1QLU A;  5I1W A;  1N5W C;  3LAE A;  3S1D A;  3D2H A;  2BVG A;  4O95 A;  3DED A;  1UXY A;  3JS8 A;  1N62 C;  1MBB A;  3FW8 A;  4PVE A;  1DIQ A;  3SR6 B;  4MLA A;  1N5X A;  2PLS A;  2I0K A;  1V97 A;  5HHZ A;  2BVH A;  4ML8 A;  1VDV A;  1W1R A;  2QPM A;  4BCA A;  4HG0 A;  3S1F A;  4PZF A;  3RJ8 A;  4DNS A;  1W1O A;  5AE1 A;  1N60 C;  1QLT A;  3HSU A;  4PVJ A;  1WYG A;  5AE2 A;  1VAO A;  1F0X A;  1T3Q C;  2Y4G A;  3C0P A;  5FXD A;  3EUB 3;  5HQX A;  2VFT A;  2VFS A;  2UUV A;  2Y3R A;  4PYT A;  3NVW B;  1AHZ A;  5FXE A;  5AE3 A;  4BC7 A;  3LLB A;  1E8G A;  3GSY A;  2MBR A;  1DZN A;  3W8W A;  2E3T A;  3EJE B;  1SB3 B;  2QKN A;  5I1V A;  3NVY B;  3EJB B;  5ADZ A;  2OAI A;  1FFV C;  3FW9 A;  4ZOH B;  1FFU C;  5FXP A;  1E8H A;  3TSJ A;  1W1M A;  2O3G A;  2WDW A;  4JB1 A;  1JRP A;  3AM9 A;  3AMZ A;  4UD8 A;  4PVK A;  2Y3S A;  4PVH A;  1N61 C;  1W1J A;  2Q85 A;  2R8D A;  2AXR A;  3NS1 B;  3EJD B;  1MBT A;  3RJA A;  1WVE A;  5L6G A;  1W1S A;  1JRO A;  1HSK A;  1AHU A;  3D2D A;  3NRZ B;  2W55 A;  5AWV A;  1AHV A;  2VFU A;  2P13 A;  3S1C A;  2P4P A;  3AN1 A;  4XLO A;  3W8Z A;  1FIQ B;  3I99 A;  3D2J A;  5D79 A;  5FXF A;  3DQ0 A;  5G5G B;  2PLI A;  1W1L A;  2BVF A;  3KJM A;  3TX1 A;  2NQW A;  1I19 A;  2R2Z A;  4BBY A;  2P3H A;  5K8E A;  1RM6 B;  2UUU A;  2RK5 A;  2Y08 A;  1WVF A; 
#chains in the Genus database with same CATH homology
 2GQU A;  5L6F A;  2W54 A;  2GQT A;  3POP A;  2Q4W A;  5HMR A;  3B9J B;  2YVS A;  4PWB A;  1FO4 A;  3NVV B;  3HRD C;  3PQB A;  3ETR B;  2VFV A;  1ZXI C;  1N63 C;  3NVZ B;  4PWC A;  5G5H B;  3FWA A;  2VFR A;  3S1E A;  2W3R A;  3VTE A;  4OAL A;  1ZR6 A;  4BC9 A;  2IPI A;  1DII A;  4JAY A;  3W8X A;  1W1K A;  2W3S A;  1W1Q A;  2VAO A;  3FW7 A;  4EC3 A;  3TSH A;  1E8F A;  2EXR A;  3PM9 A;  1E0Y A;  3BW7 A;  1QLU A;  5I1W A;  1N5W C;  3LAE A;  3S1D A;  3D2H A;  2BVG A;  4O95 A;  3DED A;  1UXY A;  3JS8 A;  1N62 C;  1MBB A;  3FW8 A;  4PVE A;  1DIQ A;  3SR6 B;  4MLA A;  1N5X A;  2PLS A;  2I0K A;  1V97 A;  5HHZ A;  2BVH A;  4ML8 A;  1VDV A;  1W1R A;  2QPM A;  4BCA A;  4HG0 A;  3S1F A;  4PZF A;  3RJ8 A;  4DNS A;  1W1O A;  5AE1 A;  1N60 C;  1QLT A;  3HSU A;  4PVJ A;  1WYG A;  5AE2 A;  1VAO A;  1F0X A;  1T3Q C;  2Y4G A;  3C0P A;  5FXD A;  3EUB 3;  5HQX A;  2VFT A;  2VFS A;  2UUV A;  2Y3R A;  4PYT A;  3NVW B;  1AHZ A;  5FXE A;  5AE3 A;  4BC7 A;  3LLB A;  1E8G A;  3GSY A;  2MBR A;  1DZN A;  3W8W A;  2E3T A;  1SB3 B;  2QKN A;  5I1V A;  3NVY B;  5ADZ A;  2OAI A;  1FFV C;  3FW9 A;  4ZOH B;  1FFU C;  5FXP A;  1E8H A;  3TSJ A;  1W1M A;  2O3G A;  2WDW A;  4JB1 A;  1JRP A;  3AM9 A;  3AMZ A;  4UD8 A;  4PVK A;  2Y3S A;  4PVH A;  1N61 C;  1W1J A;  2Q85 A;  2R8D A;  2AXR A;  3NS1 B;  1MBT A;  3RJA A;  1WVE A;  5L6G A;  1W1S A;  1JRO A;  1HSK A;  1AHU A;  3D2D A;  3NRZ B;  2W55 A;  5AWV A;  1AHV A;  2VFU A;  2P13 A;  3S1C A;  2P4P A;  3AN1 A;  4XLO A;  3W8Z A;  1FIQ B;  3I99 A;  3D2J A;  5D79 A;  5FXF A;  3DQ0 A;  5G5G B;  2PLI A;  1W1L A;  2BVF A;  3KJM A;  3TX1 A;  2NQW A;  1I19 A;  2R2Z A;  4BBY A;  2P3H A;  5K8E A;  1RM6 B;  2UUU A;  2RK5 A;  2Y08 A;  1WVF A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2QPMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations