2R8DA

The structure of transporter associated domain corc_hlyc from a xylella fastidiosa temecula1 hemolysin in complex with mg++ and mn++
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
85
structure length
78
Chain Sequence
ALMVTREDGSFLIDGTLPIEELREVLGAENNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDGARIDLLLQRLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structure of transporter associated domain CorC in complex with Mg++ and Mn++ from Xylella fastidiosa.
rcsb
molecule tags Toxin
source organism Xylella fastidiosa
molecule keywords Hemolysin
total genus 16
structure length 78
sequence length 85
ec nomenclature
pdb deposition date 2007-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2r8dA00
2VFVA 1N63C 2PLIA 2P3HA 2VFSA 2NQWA 2P13A 4BC9A 5HQXA 1E8GA 3HRDC 3I99A 5HHZA 1DIIA 1AHVA 1FFUC 1DIQA 1AHUA 1ZR6A 1JRPA 2W3RA 1FIQB 3NVZB 3NS1B 2VFUA 2I0KA 5FXFA 2VAOA 3AMZA 1W1RA 2QKNA 2W55A 4JAYA 3LAEA 1V97A 1W1QA 1FO4A 2P4PA 2YVSA 5G5GB 1N60C 4BBYA 2AXRA 1E8FA 3DQ0A 1W1MA 5ADZA 2W3SA 2E3TA 3BW7A 1N5WC 1RM6B 2MBRA 3DEDA 1N62C 4BC7A 3S1DA 1VAOA 5G5HB 3W8WA 2EXRA 3ETRB 3AM9A 4MLAA 3AN1A 2VFRA 3C0PA 5HMRA 4JB1A 4XLOA 1W1OA 5FXDA 1WYGA 3JS8A 5AE2A 1VDVA 2W54A 2Q4WA 2PLSA 3NVVB 3W8ZA 1SB3B 1W1JA 1WVEA 1DZNA 2Q85A 1W1KA 2O3GA 4ZOHB 1MBTA 1AHZA 3TX1A 1HSKA 3EUB3 5AE3A 1ZXIC 1W1SA 1T3QC 3NVYB 2GQUA 3B9JB 3NRZB 2BVGA 3S1FA 2GQTA 1E0YA 2QPMA 5FXPA 3SR6B 1F0XA 2RK5A 3LLBA 1UXYA 1E8HA 3PM9A 4HG0A 4BCAA 5AE1A 4O95A 2R8DA 1N61C 1QLTA 2VFTA 4PYTA 3W8XA 1I19A 3S1CA 1QLUA 3NVWB 2OAIA 3S1EA 5FXEA 1WVFA 4OALA 2R2ZA 1W1LA 4ML8A 2BVFA 1N5XA 1FFVC 1JROA 1MBBA 2BVHA 3KJMA
chains in the Genus database with same CATH superfamily
2VFVA 1N63C 2PLIA 5D79A 4PVJA 2P3HA 2VFSA 2NQWA 2P13A 3FW8A 4BC9A 1E8GA 3HRDC 5HQXA 3I99A 5HHZA 1DIIA 1AHVA 1FFUC 1DIQA 1AHUA 1ZR6A 1JRPA 2W3RA 4PVEA 1FIQB 3NVZB 3NS1B 2VFUA 2I0KA 5FXFA 2VAOA 4PWCA 3AMZA 1W1RA 2QKNA 2W55A 4JAYA 3LAEA 1V97A 1W1QA 1FO4A 2P4PA 2Y08A 2YVSA 5G5GB 1N60C 4BBYA 2AXRA 2WDWA 1E8FA 4UD8A 4DNSA 3DQ0A 4PWBA 3FW9A 1W1MA 5ADZA 2W3SA 2E3TA 5AWVA 3BW7A 1N5WC 5I1WA 1RM6B 2MBRA 3TSJA 3GSYA 2UUUA 3DEDA 1N62C 4BC7A 2Y3SA 3S1DA 1VAOA 5G5HB 3TSHA 2EXRA 3W8WA 3ETRB 3AM9A 4MLAA 3AN1A 2VFRA 3C0PA 5HMRA 4JB1A 4PVHA 3RJ8A 3POPA 1W1OA 4XLOA 1WYGA 3JS8A 5FXDA 5AE2A 1VDVA 2W54A 2Q4WA 2PLSA 3PQBA 3NVVB 3W8ZA 1SB3B 2IPIA 3FW7A 1W1JA 1WVEA 1DZNA 2Q85A 1W1KA 2O3GA 4ZOHB 5I1VA 1MBTA 1AHZA 2Y3RA 3D2JA 3TX1A 1HSKA 3EUB3 2UUVA 5AE3A 1ZXIC 3FWAA 1W1SA 1T3QC 3NVYB 2GQUA 3B9JB 3NRZB 4PVKA 2BVGA 3RJAA 3S1FA 4EC3A 2GQTA 1E0YA 2QPMA 5FXPA 3SR6B 1F0XA 2RK5A 3LLBA 1UXYA 1E8HA 3HSUA 5K8EA 3PM9A 4HG0A 4BCAA 5AE1A 4O95A 2R8DA 2Y4GA 3D2HA 1N61C 1QLTA 2VFTA 4PYTA 3VTEA 5L6GA 3W8XA 1I19A 3S1CA 1QLUA 3NVWB 2OAIA 3S1EA 5FXEA 1WVFA 4OALA 2R2ZA 5L6FA 4PZFA 1W1LA 4ML8A 2BVFA 1N5XA 3D2DA 1FFVC 1JROA 1MBBA 2BVHA 3KJMA
chains in the Genus database with same CATH topology
2VFVA 1N63C 2PLIA 5D79A 4PVJA 2P3HA 2VFSA 2NQWA 2P13A 3FW8A 4BC9A 1E8GA 3HRDC 5HQXA 3I99A 5HHZA 1DIIA 1AHVA 1FFUC 1DIQA 1AHUA 1ZR6A 1JRPA 2W3RA 4PVEA 1FIQB 3NVZB 3NS1B 2VFUA 2I0KA 5FXFA 2VAOA 4PWCA 3AMZA 1W1RA 2QKNA 2W55A 4JAYA 3LAEA 1V97A 1W1QA 1FO4A 2P4PA 2Y08A 2YVSA 5G5GB 1N60C 4BBYA 2AXRA 2WDWA 1E8FA 4UD8A 4DNSA 3DQ0A 4PWBA 3FW9A 1W1MA 5ADZA 2W3SA 2E3TA 5AWVA 3BW7A 1N5WC 5I1WA 1RM6B 2MBRA 3TSJA 3GSYA 2UUUA 3DEDA 1N62C 4BC7A 2Y3SA 3S1DA 1VAOA 5G5HB 3TSHA 2EXRA 3W8WA 3ETRB 3AM9A 4MLAA 3AN1A 2VFRA 3C0PA 5HMRA 4JB1A 4PVHA 3RJ8A 3POPA 1W1OA 4XLOA 1WYGA 3JS8A 5FXDA 5AE2A 1VDVA 2W54A 2Q4WA 2PLSA 3PQBA 3NVVB 3W8ZA 1SB3B 2IPIA 3FW7A 1W1JA 1WVEA 1DZNA 2Q85A 1W1KA 2O3GA 4ZOHB 5I1VA 1MBTA 1AHZA 2Y3RA 3D2JA 3TX1A 1HSKA 3EUB3 2UUVA 5AE3A 1ZXIC 3FWAA 1W1SA 1T3QC 3NVYB 2GQUA 3B9JB 3NRZB 4PVKA 2BVGA 3RJAA 3S1FA 4EC3A 2GQTA 1E0YA 2QPMA 5FXPA 3SR6B 1F0XA 2RK5A 3LLBA 1UXYA 1E8HA 3HSUA 5K8EA 3PM9A 4HG0A 4BCAA 5AE1A 4O95A 2R8DA 2Y4GA 3D2HA 1N61C 1QLTA 2VFTA 4PYTA 3VTEA 5L6GA 3W8XA 1I19A 3S1CA 1QLUA 3NVWB 2OAIA 3S1EA 5FXEA 1WVFA 4OALA 2R2ZA 5L6FA 4PZFA 1W1LA 4ML8A 2BVFA 1N5XA 3D2DA 1FFVC 1JROA 1MBBA 2BVHA 3KJMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFV A;  1N63 C;  2PLI A;  2P3H A;  2VFS A;  2NQW A;  2P13 A;  4BC9 A;  5HQX A;  1E8G A;  3HRD C;  3I99 A;  5HHZ A;  1DII A;  1AHV A;  1FFU C;  1DIQ A;  1AHU A;  1ZR6 A;  1JRP A;  2W3R A;  1FIQ B;  3NVZ B;  3NS1 B;  2VFU A;  2I0K A;  5FXF A;  2VAO A;  3AMZ A;  1W1R A;  2QKN A;  2W55 A;  4JAY A;  3LAE A;  1V97 A;  1W1Q A;  1FO4 A;  2P4P A;  2YVS A;  5G5G B;  1N60 C;  4BBY A;  2AXR A;  1E8F A;  3DQ0 A;  1W1M A;  5ADZ A;  2W3S A;  2E3T A;  3BW7 A;  1N5W C;  1RM6 B;  2MBR A;  3DED A;  1N62 C;  4BC7 A;  3S1D A;  1VAO A;  5G5H B;  3W8W A;  2EXR A;  3ETR B;  3AM9 A;  4MLA A;  3AN1 A;  2VFR A;  3C0P A;  5HMR A;  4JB1 A;  4XLO A;  1W1O A;  5FXD A;  1WYG A;  3JS8 A;  5AE2 A;  1VDV A;  2W54 A;  2Q4W A;  2PLS A;  3NVV B;  3W8Z A;  1SB3 B;  1W1J A;  1WVE A;  1DZN A;  2Q85 A;  1W1K A;  2O3G A;  4ZOH B;  1MBT A;  1AHZ A;  3TX1 A;  1HSK A;  3EUB 3;  5AE3 A;  1ZXI C;  1W1S A;  1T3Q C;  3NVY B;  2GQU A;  3B9J B;  3NRZ B;  2BVG A;  3S1F A;  2GQT A;  1E0Y A;  2QPM A;  5FXP A;  3SR6 B;  1F0X A;  2RK5 A;  3LLB A;  1UXY A;  1E8H A;  3PM9 A;  4HG0 A;  4BCA A;  5AE1 A;  4O95 A;  2R8D A;  1N61 C;  1QLT A;  2VFT A;  4PYT A;  3W8X A;  1I19 A;  3S1C A;  1QLU A;  3NVW B;  2OAI A;  3S1E A;  5FXE A;  1WVF A;  4OAL A;  2R2Z A;  1W1L A;  4ML8 A;  2BVF A;  1N5X A;  1FFV C;  1JRO A;  1MBB A;  2BVH A;  3KJM A; 
#chains in the Genus database with same CATH topology
 2VFV A;  1N63 C;  2PLI A;  5D79 A;  4PVJ A;  2P3H A;  2VFS A;  2NQW A;  2P13 A;  3FW8 A;  4BC9 A;  1E8G A;  3HRD C;  5HQX A;  3I99 A;  5HHZ A;  1DII A;  1AHV A;  1FFU C;  1DIQ A;  1AHU A;  1ZR6 A;  1JRP A;  2W3R A;  4PVE A;  1FIQ B;  3NVZ B;  3NS1 B;  2VFU A;  2I0K A;  5FXF A;  2VAO A;  4PWC A;  3AMZ A;  1W1R A;  2QKN A;  2W55 A;  4JAY A;  3LAE A;  1V97 A;  1W1Q A;  1FO4 A;  2P4P A;  2Y08 A;  2YVS A;  5G5G B;  1N60 C;  4BBY A;  2AXR A;  2WDW A;  1E8F A;  4UD8 A;  4DNS A;  3DQ0 A;  4PWB A;  3FW9 A;  1W1M A;  5ADZ A;  2W3S A;  2E3T A;  5AWV A;  3BW7 A;  1N5W C;  5I1W A;  1RM6 B;  2MBR A;  3TSJ A;  3GSY A;  2UUU A;  3DED A;  1N62 C;  4BC7 A;  2Y3S A;  3S1D A;  1VAO A;  5G5H B;  3TSH A;  2EXR A;  3W8W A;  3ETR B;  3AM9 A;  4MLA A;  3AN1 A;  2VFR A;  3C0P A;  5HMR A;  4JB1 A;  4PVH A;  3RJ8 A;  3POP A;  1W1O A;  4XLO A;  1WYG A;  3JS8 A;  5FXD A;  5AE2 A;  1VDV A;  2W54 A;  2Q4W A;  2PLS A;  3PQB A;  3NVV B;  3W8Z A;  1SB3 B;  2IPI A;  3FW7 A;  1W1J A;  1WVE A;  1DZN A;  2Q85 A;  1W1K A;  2O3G A;  4ZOH B;  5I1V A;  1MBT A;  1AHZ A;  2Y3R A;  3D2J A;  3TX1 A;  1HSK A;  3EUB 3;  2UUV A;  5AE3 A;  1ZXI C;  3FWA A;  1W1S A;  1T3Q C;  3NVY B;  2GQU A;  3B9J B;  3NRZ B;  4PVK A;  2BVG A;  3RJA A;  3S1F A;  4EC3 A;  2GQT A;  1E0Y A;  2QPM A;  5FXP A;  3SR6 B;  1F0X A;  2RK5 A;  3LLB A;  1UXY A;  1E8H A;  3HSU A;  5K8E A;  3PM9 A;  4HG0 A;  4BCA A;  5AE1 A;  4O95 A;  2R8D A;  2Y4G A;  3D2H A;  1N61 C;  1QLT A;  2VFT A;  4PYT A;  3VTE A;  5L6G A;  3W8X A;  1I19 A;  3S1C A;  1QLU A;  3NVW B;  2OAI A;  3S1E A;  5FXE A;  1WVF A;  4OAL A;  2R2Z A;  5L6F A;  4PZF A;  1W1L A;  4ML8 A;  2BVF A;  1N5X A;  3D2D A;  1FFV C;  1JRO A;  1MBB A;  2BVH A;  3KJM A; 
#chains in the Genus database with same CATH homology
 2VFV A;  1N63 C;  2PLI A;  5D79 A;  4PVJ A;  2P3H A;  2VFS A;  2NQW A;  2P13 A;  3FW8 A;  4BC9 A;  1E8G A;  3HRD C;  5HQX A;  3I99 A;  5HHZ A;  1DII A;  1AHV A;  1FFU C;  1DIQ A;  1AHU A;  1ZR6 A;  1JRP A;  2W3R A;  4PVE A;  1FIQ B;  3NVZ B;  3NS1 B;  2VFU A;  2I0K A;  5FXF A;  2VAO A;  4PWC A;  3AMZ A;  1W1R A;  2QKN A;  2W55 A;  4JAY A;  3LAE A;  1V97 A;  1W1Q A;  1FO4 A;  2P4P A;  2Y08 A;  2YVS A;  5G5G B;  1N60 C;  4BBY A;  2AXR A;  2WDW A;  1E8F A;  4UD8 A;  4DNS A;  3DQ0 A;  4PWB A;  3FW9 A;  1W1M A;  5ADZ A;  2W3S A;  2E3T A;  5AWV A;  3BW7 A;  1N5W C;  5I1W A;  1RM6 B;  2MBR A;  3TSJ A;  3GSY A;  2UUU A;  3DED A;  1N62 C;  4BC7 A;  2Y3S A;  3S1D A;  1VAO A;  5G5H B;  3TSH A;  2EXR A;  3W8W A;  3ETR B;  3AM9 A;  4MLA A;  3AN1 A;  2VFR A;  3C0P A;  5HMR A;  4JB1 A;  4PVH A;  3RJ8 A;  3POP A;  1W1O A;  4XLO A;  1WYG A;  3JS8 A;  5FXD A;  5AE2 A;  1VDV A;  2W54 A;  2Q4W A;  2PLS A;  3PQB A;  3NVV B;  3W8Z A;  1SB3 B;  2IPI A;  3FW7 A;  1W1J A;  1WVE A;  1DZN A;  2Q85 A;  1W1K A;  2O3G A;  4ZOH B;  5I1V A;  1MBT A;  1AHZ A;  2Y3R A;  3D2J A;  3TX1 A;  1HSK A;  3EUB 3;  2UUV A;  5AE3 A;  1ZXI C;  3FWA A;  1W1S A;  1T3Q C;  3NVY B;  2GQU A;  3B9J B;  3NRZ B;  4PVK A;  2BVG A;  3RJA A;  3S1F A;  4EC3 A;  2GQT A;  1E0Y A;  2QPM A;  5FXP A;  3SR6 B;  1F0X A;  2RK5 A;  3LLB A;  1UXY A;  1E8H A;  3HSU A;  5K8E A;  3PM9 A;  4HG0 A;  4BCA A;  5AE1 A;  4O95 A;  2R8D A;  2Y4G A;  3D2H A;  1N61 C;  1QLT A;  2VFT A;  4PYT A;  3VTE A;  5L6G A;  3W8X A;  1I19 A;  3S1C A;  1QLU A;  3NVW B;  2OAI A;  3S1E A;  5FXE A;  1WVF A;  4OAL A;  2R2Z A;  5L6F A;  4PZF A;  1W1L A;  4ML8 A;  2BVF A;  1N5X A;  3D2D A;  1FFV C;  1JRO A;  1MBB A;  2BVH A;  3KJM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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