2R8DA

The structure of transporter associated domain corc_hlyc from a xylella fastidiosa temecula1 hemolysin in complex with mg++ and mn++
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
85
structure length
78
Chain Sequence
ALMVTREDGSFLIDGTLPIEELREVLGAENNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDGARIDLLLQRLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (10-11)S4 (70-74)TI1 (12-15)TIV3 (66-69)AH1 (25-32)S2 (17-18)TIV1 (46-49)TII1 (60-63)S3 (63-67)TI2 (20-23)AH2 (51-55)Updating...
connected with : NaN
molecule tags Toxin
source organism Xylella fastidiosa
publication title The structure of transporter associated domain CorC in complex with Mg++ and Mn++ from Xylella fastidiosa.
rcsb
molecule keywords Hemolysin
total genus 16
structure length 78
sequence length 85
ec nomenclature
pdb deposition date 2007-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2r8dA00
1ZR6A 1VDVA 1FIQB 2W3SA 2OAIA 3I99A 1N5XA 3B9JB 4ZOHB 1VAOA 2BVFA 3PM9A 2PLIA 1DZNA 1RM6B 4XLOA 4OALA 1N60C 1SB3B 2R2ZA 3LLBA 3NVWB 4JAYA 3W8XA 3EUB3 5FXDA 1FFVC 4BC7A 1JROA 2VFVA 1HSKA 3NVZB 1T3QC 2R8DA 2VFTA 4JB1A 4MLAA 2E3TA 1WVEA 3DEDA 4PYTA 3NVYB 4HG0A 2VFUA 5AE2A 2VAOA 3NS1B 3S1CA 1FO4A 1MBBA 3C0PA 4BCAA 5HHZA 3BW7A 2GQTA 1N61C 5AE1A 1FFUC 1F0XA 3S1EA 4ML8A 1E8GA 5FXPA 2PLSA 1JRPA 5G5GB 1I19A 2NQWA 1MBTA 1N63C 2VFSA 3ETRB 5ADZA 2QKNA 3NVVB 3W8WA 2BVGA 1AHUA 2QPMA 3AN1A 1W1JA 1W1SA 1N5WC 1AHVA 2Q4WA 3NRZB 2Q85A 1W1QA 2W54A 2W55A 5FXFA 2RK5A 5AE3A 1UXYA 1WVFA 2BVHA 1W1OA 3DQ0A 4O95A 3AMZA 3LAEA 2O3GA 3KJMA 2MBRA 2P13A 3S1FA 5FXEA 1AHZA 1QLUA 5HMRA 3JS8A 1E8FA 1N62C 1V97A 1ZXIC 2EXRA 1W1KA 2I0KA 2GQUA 2AXRA 3HRDC 3TX1A 2W3RA 4BC9A 1W1RA 1E8HA 3AM9A 1WYGA 3W8ZA 1DIQA 1DIIA 2P4PA 1QLTA 5HQXA 1E0YA 2YVSA 3S1DA 2P3HA 2VFRA 3SR6B 5G5HB 1W1LA 4BBYA 1W1MA
chains in the Genus database with same CATH superfamily
1ZR6A 1VDVA 1FIQB 2W3SA 2OAIA 3I99A 1N5XA 3B9JB 4ZOHB 1VAOA 2IPIA 2BVFA 3PM9A 2PLIA 1DZNA 1RM6B 4XLOA 4OALA 1N60C 1SB3B 2R2ZA 3LLBA 3NVWB 4JAYA 3FW8A 5I1VA 3W8XA 3EUB3 5FXDA 1FFVC 4PVKA 4BC7A 1JROA 2VFVA 1HSKA 3NVZB 1T3QC 2Y4GA 2R8DA 2VFTA 3POPA 4JB1A 4MLAA 2E3TA 1WVEA 3DEDA 2Y3SA 4PYTA 3NVYB 4HG0A 3D2HA 2VFUA 2Y08A 5AE2A 2VAOA 3NS1B 3S1CA 1FO4A 1MBBA 3C0PA 4BCAA 5HHZA 3BW7A 2GQTA 1N61C 5AE1A 1FFUC 1F0XA 3S1EA 3PQBA 2UUVA 4ML8A 1E8GA 5FXPA 2PLSA 1JRPA 4PVJA 3RJ8A 5K8EA 5G5GB 5L6GA 1I19A 2NQWA 1MBTA 1N63C 2VFSA 3ETRB 3RJAA 5ADZA 5L6FA 5AWVA 2QKNA 3NVVB 3W8WA 2BVGA 1AHUA 2QPMA 3AN1A 1W1JA 1W1SA 5I1WA 1N5WC 1AHVA 2Q4WA 3NRZB 3GSYA 3FWAA 2Q85A 4PVHA 1W1QA 2W54A 3HSUA 2W55A 4PZFA 5FXFA 2RK5A 5AE3A 1UXYA 1WVFA 2BVHA 1W1OA 3DQ0A 4O95A 3AMZA 3LAEA 2O3GA 3KJMA 2MBRA 3FW9A 3FW7A 4PWBA 2P13A 3S1FA 5FXEA 5D79A 1AHZA 1QLUA 5HMRA 3JS8A 1E8FA 1N62C 1V97A 1ZXIC 2EXRA 1W1KA 2I0KA 3D2DA 2GQUA 3VTEA 2AXRA 3HRDC 3TX1A 2W3RA 4BC9A 1W1RA 1E8HA 2Y3RA 3AM9A 1WYGA 3TSJA 4PVEA 4EC3A 3W8ZA 2WDWA 4PWCA 3TSHA 4DNSA 1DIQA 2UUUA 1DIIA 2P4PA 1QLTA 5HQXA 1E0YA 2YVSA 4UD8A 3S1DA 2P3HA 2VFRA 3SR6B 3D2JA 5G5HB 1W1LA 4BBYA 1W1MA
chains in the Genus database with same CATH topology
1ZR6A 1VDVA 1FIQB 2W3SA 2OAIA 3I99A 1N5XA 3B9JB 4ZOHB 1VAOA 2IPIA 2BVFA 3PM9A 2PLIA 1DZNA 1RM6B 4XLOA 4OALA 1N60C 1SB3B 2R2ZA 3LLBA 3NVWB 4JAYA 3FW8A 5I1VA 3W8XA 3EUB3 5FXDA 1FFVC 4PVKA 4BC7A 1JROA 2VFVA 1HSKA 3NVZB 1T3QC 2Y4GA 2R8DA 2VFTA 3POPA 4JB1A 4MLAA 2E3TA 1WVEA 3DEDA 2Y3SA 4PYTA 3NVYB 4HG0A 3D2HA 2VFUA 2Y08A 5AE2A 2VAOA 3NS1B 3S1CA 1FO4A 1MBBA 3C0PA 4BCAA 5HHZA 3BW7A 2GQTA 1N61C 5AE1A 1FFUC 1F0XA 3S1EA 3PQBA 2UUVA 4ML8A 1E8GA 5FXPA 2PLSA 1JRPA 4PVJA 3RJ8A 5K8EA 5G5GB 5L6GA 1I19A 2NQWA 1MBTA 1N63C 2VFSA 3ETRB 3RJAA 5ADZA 5L6FA 5AWVA 2QKNA 3NVVB 3W8WA 2BVGA 1AHUA 2QPMA 3AN1A 1W1JA 1W1SA 5I1WA 1N5WC 1AHVA 2Q4WA 3NRZB 3GSYA 3FWAA 2Q85A 4PVHA 1W1QA 2W54A 3HSUA 2W55A 4PZFA 5FXFA 2RK5A 5AE3A 1UXYA 1WVFA 2BVHA 1W1OA 3DQ0A 4O95A 3AMZA 3LAEA 2O3GA 3KJMA 2MBRA 3FW9A 3FW7A 4PWBA 2P13A 3S1FA 5FXEA 5D79A 1AHZA 1QLUA 5HMRA 3JS8A 1E8FA 1N62C 1V97A 1ZXIC 2EXRA 1W1KA 2I0KA 3D2DA 2GQUA 3VTEA 2AXRA 3HRDC 3TX1A 2W3RA 4BC9A 1W1RA 1E8HA 2Y3RA 3AM9A 1WYGA 3TSJA 4PVEA 4EC3A 3W8ZA 2WDWA 4PWCA 3TSHA 4DNSA 1DIQA 2UUUA 1DIIA 2P4PA 1QLTA 5HQXA 1E0YA 2YVSA 4UD8A 3S1DA 2P3HA 2VFRA 3SR6B 3D2JA 5G5HB 1W1LA 4BBYA 1W1MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZR6 A;  1VDV A;  1FIQ B;  2W3S A;  2OAI A;  3I99 A;  1N5X A;  3B9J B;  4ZOH B;  1VAO A;  2BVF A;  3PM9 A;  2PLI A;  1DZN A;  1RM6 B;  4XLO A;  4OAL A;  1N60 C;  1SB3 B;  2R2Z A;  3LLB A;  3NVW B;  4JAY A;  3W8X A;  3EUB 3;  5FXD A;  1FFV C;  4BC7 A;  1JRO A;  2VFV A;  1HSK A;  3NVZ B;  1T3Q C;  2R8D A;  2VFT A;  4JB1 A;  4MLA A;  2E3T A;  1WVE A;  3DED A;  4PYT A;  3NVY B;  4HG0 A;  2VFU A;  5AE2 A;  2VAO A;  3NS1 B;  3S1C A;  1FO4 A;  1MBB A;  3C0P A;  4BCA A;  5HHZ A;  3BW7 A;  2GQT A;  1N61 C;  5AE1 A;  1FFU C;  1F0X A;  3S1E A;  4ML8 A;  1E8G A;  5FXP A;  2PLS A;  1JRP A;  5G5G B;  1I19 A;  2NQW A;  1MBT A;  1N63 C;  2VFS A;  3ETR B;  5ADZ A;  2QKN A;  3NVV B;  3W8W A;  2BVG A;  1AHU A;  2QPM A;  3AN1 A;  1W1J A;  1W1S A;  1N5W C;  1AHV A;  2Q4W A;  3NRZ B;  2Q85 A;  1W1Q A;  2W54 A;  2W55 A;  5FXF A;  2RK5 A;  5AE3 A;  1UXY A;  1WVF A;  2BVH A;  1W1O A;  3DQ0 A;  4O95 A;  3AMZ A;  3LAE A;  2O3G A;  3KJM A;  2MBR A;  2P13 A;  3S1F A;  5FXE A;  1AHZ A;  1QLU A;  5HMR A;  3JS8 A;  1E8F A;  1N62 C;  1V97 A;  1ZXI C;  2EXR A;  1W1K A;  2I0K A;  2GQU A;  2AXR A;  3HRD C;  3TX1 A;  2W3R A;  4BC9 A;  1W1R A;  1E8H A;  3AM9 A;  1WYG A;  3W8Z A;  1DIQ A;  1DII A;  2P4P A;  1QLT A;  5HQX A;  1E0Y A;  2YVS A;  3S1D A;  2P3H A;  2VFR A;  3SR6 B;  5G5H B;  1W1L A;  4BBY A;  1W1M A; 
#chains in the Genus database with same CATH topology
 1ZR6 A;  1VDV A;  1FIQ B;  2W3S A;  2OAI A;  3I99 A;  1N5X A;  3B9J B;  4ZOH B;  1VAO A;  2IPI A;  2BVF A;  3PM9 A;  2PLI A;  1DZN A;  1RM6 B;  4XLO A;  4OAL A;  1N60 C;  1SB3 B;  2R2Z A;  3LLB A;  3NVW B;  4JAY A;  3FW8 A;  5I1V A;  3W8X A;  3EUB 3;  5FXD A;  1FFV C;  4PVK A;  4BC7 A;  1JRO A;  2VFV A;  1HSK A;  3NVZ B;  1T3Q C;  2Y4G A;  2R8D A;  2VFT A;  3POP A;  4JB1 A;  4MLA A;  2E3T A;  1WVE A;  3DED A;  2Y3S A;  4PYT A;  3NVY B;  4HG0 A;  3D2H A;  2VFU A;  2Y08 A;  5AE2 A;  2VAO A;  3NS1 B;  3S1C A;  1FO4 A;  1MBB A;  3C0P A;  4BCA A;  5HHZ A;  3BW7 A;  2GQT A;  1N61 C;  5AE1 A;  1FFU C;  1F0X A;  3S1E A;  3PQB A;  2UUV A;  4ML8 A;  1E8G A;  5FXP A;  2PLS A;  1JRP A;  4PVJ A;  3RJ8 A;  5K8E A;  5G5G B;  5L6G A;  1I19 A;  2NQW A;  1MBT A;  1N63 C;  2VFS A;  3ETR B;  3RJA A;  5ADZ A;  5L6F A;  5AWV A;  2QKN A;  3NVV B;  3W8W A;  2BVG A;  1AHU A;  2QPM A;  3AN1 A;  1W1J A;  1W1S A;  5I1W A;  1N5W C;  1AHV A;  2Q4W A;  3NRZ B;  3GSY A;  3FWA A;  2Q85 A;  4PVH A;  1W1Q A;  2W54 A;  3HSU A;  2W55 A;  4PZF A;  5FXF A;  2RK5 A;  5AE3 A;  1UXY A;  1WVF A;  2BVH A;  1W1O A;  3DQ0 A;  4O95 A;  3AMZ A;  3LAE A;  2O3G A;  3KJM A;  2MBR A;  3FW9 A;  3FW7 A;  4PWB A;  2P13 A;  3S1F A;  5FXE A;  5D79 A;  1AHZ A;  1QLU A;  5HMR A;  3JS8 A;  1E8F A;  1N62 C;  1V97 A;  1ZXI C;  2EXR A;  1W1K A;  2I0K A;  3D2D A;  2GQU A;  3VTE A;  2AXR A;  3HRD C;  3TX1 A;  2W3R A;  4BC9 A;  1W1R A;  1E8H A;  2Y3R A;  3AM9 A;  1WYG A;  3TSJ A;  4PVE A;  4EC3 A;  3W8Z A;  2WDW A;  4PWC A;  3TSH A;  4DNS A;  1DIQ A;  2UUU A;  1DII A;  2P4P A;  1QLT A;  5HQX A;  1E0Y A;  2YVS A;  4UD8 A;  3S1D A;  2P3H A;  2VFR A;  3SR6 B;  3D2J A;  5G5H B;  1W1L A;  4BBY A;  1W1M A; 
#chains in the Genus database with same CATH homology
 1ZR6 A;  1VDV A;  1FIQ B;  2W3S A;  2OAI A;  3I99 A;  1N5X A;  3B9J B;  4ZOH B;  1VAO A;  2IPI A;  2BVF A;  3PM9 A;  2PLI A;  1DZN A;  1RM6 B;  4XLO A;  4OAL A;  1N60 C;  1SB3 B;  2R2Z A;  3LLB A;  3NVW B;  4JAY A;  3FW8 A;  5I1V A;  3W8X A;  3EUB 3;  5FXD A;  1FFV C;  4PVK A;  4BC7 A;  1JRO A;  2VFV A;  1HSK A;  3NVZ B;  1T3Q C;  2Y4G A;  2R8D A;  2VFT A;  3POP A;  4JB1 A;  4MLA A;  2E3T A;  1WVE A;  3DED A;  2Y3S A;  4PYT A;  3NVY B;  4HG0 A;  3D2H A;  2VFU A;  2Y08 A;  5AE2 A;  2VAO A;  3NS1 B;  3S1C A;  1FO4 A;  1MBB A;  3C0P A;  4BCA A;  5HHZ A;  3BW7 A;  2GQT A;  1N61 C;  5AE1 A;  1FFU C;  1F0X A;  3S1E A;  3PQB A;  2UUV A;  4ML8 A;  1E8G A;  5FXP A;  2PLS A;  1JRP A;  4PVJ A;  3RJ8 A;  5K8E A;  5G5G B;  5L6G A;  1I19 A;  2NQW A;  1MBT A;  1N63 C;  2VFS A;  3ETR B;  3RJA A;  5ADZ A;  5L6F A;  5AWV A;  2QKN A;  3NVV B;  3W8W A;  2BVG A;  1AHU A;  2QPM A;  3AN1 A;  1W1J A;  1W1S A;  5I1W A;  1N5W C;  1AHV A;  2Q4W A;  3NRZ B;  3GSY A;  3FWA A;  2Q85 A;  4PVH A;  1W1Q A;  2W54 A;  3HSU A;  2W55 A;  4PZF A;  5FXF A;  2RK5 A;  5AE3 A;  1UXY A;  1WVF A;  2BVH A;  1W1O A;  3DQ0 A;  4O95 A;  3AMZ A;  3LAE A;  2O3G A;  3KJM A;  2MBR A;  3FW9 A;  3FW7 A;  4PWB A;  2P13 A;  3S1F A;  5FXE A;  5D79 A;  1AHZ A;  1QLU A;  5HMR A;  3JS8 A;  1E8F A;  1N62 C;  1V97 A;  1ZXI C;  2EXR A;  1W1K A;  2I0K A;  3D2D A;  2GQU A;  3VTE A;  2AXR A;  3HRD C;  3TX1 A;  2W3R A;  4BC9 A;  1W1R A;  1E8H A;  2Y3R A;  3AM9 A;  1WYG A;  3TSJ A;  4PVE A;  4EC3 A;  3W8Z A;  2WDW A;  4PWC A;  3TSH A;  4DNS A;  1DIQ A;  2UUU A;  1DII A;  2P4P A;  1QLT A;  5HQX A;  1E0Y A;  2YVS A;  4UD8 A;  3S1D A;  2P3H A;  2VFR A;  3SR6 B;  3D2J A;  5G5H B;  1W1L A;  4BBY A;  1W1M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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