2UUUA

Alkyldihydroxyacetonephosphate synthase in p212121
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
581
structure length
550
Chain Sequence
MGSPKEHIDLYQQIKWNGWGDTRKFLHQLKPSGTIAMTTPEVSSVPLPSLRGFIKKELTKPFVLDETPALQIENIHVDPPKQYPEFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVCLYFIFASKQNENKDMAQYIEAKKLMTDIIFKYGGSLSRGWINVYRSLKETIDPKDICNPRKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The Crucial Step in Ether Phospholipid Biosynthesis: Structural Basis of a Noncanonical Reaction Associated with a Peroxisomal Disorder.
pubmed doi rcsb
molecule tags Transferase
source organism Dictyostelium discoideum
molecule keywords ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE
total genus 181
structure length 550
sequence length 581
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.26: Alkylglycerone-phosphate synthase.
pdb deposition date 2007-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2uuuA02
3.40.462.40 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2uuuA01
2WDWA 2Y3SA 5L6FA 5I1WA 3PQBA 5I1VA 3POPA 2Y3RA 2Y08A 2UUVA 5K8EA 2IPIA 2Y4GA 3HSUA 5AWVA 3RJAA 3RJ8A 5L6GA 2UUUA
chains in the Genus database with same CATH superfamily
4BCAA 1F0XA 1QLUA 2AXRA 1E0YA 3FW9A 3S1EA 2O3GA 3AN1A 1FIQB 1V97A 1E8GA 4PVEA 4DNSA 1AHVA 5I1VA 1AHUA 2Q85A 1VAOA 4BBYA 3LAEA 3LLBA 2NQWA 4UD8A 2BVGA 1QLTA 3FW7A 2BVHA 3JS8A 5FXEA 2PLIA 3B9JB 1UXYA 4JB1A 3RJ8A 2P13A 3W8WA 1ZR6A 3NRZB 3NVVB 1E8FA 1VDVA 1N5XA 2W3SA 1ZXIC 1E8HA 1DZNA 5AE2A 3W8ZA 3POPA 1W1LA 3ETRB 3S1CA 4PWCA 4HG0A 3D2HA 4PVHA 3TSHA 5G5HB 2R2ZA 3AM9A 1T3QC 1N5WC 2QKNA 5AE3A 5K8EA 3TX1A 1DIIA 4XLOA 4ML8A 1JRPA 1W1QA 2VFVA 2Y4GA 1N60C 1W1MA 5HQXA 1MBTA 1FFUC 2P4PA 4PWBA 5L6GA 1RM6B 2UUUA 3NVYB 2YVSA 3S1DA 3HRDC 3TSJA 4BC7A 2RK5A 2WDWA 2Y3SA 5L6FA 3S1FA 2R8DA 3PQBA 1SB3B 1N62C 4PZFA 1W1RA 3NVZB 2P3HA 2OAIA 2PLSA 4O95A 4PYTA 5AE1A 2Y3RA 2Q4WA 2W54A 4MLAA 3GSYA 1WVFA 3D2DA 3AMZA 2E3TA 3PM9A 3HSUA 4PVJA 5HHZA 3I99A 3KJMA 5FXDA 3RJAA 3SR6B 3C0PA 2W3RA 4PVKA 2W55A 5D79A 2QPMA 1DIQA 1N63C 3VTEA 2VFTA 3FWAA 5I1WA 2GQTA 4BC9A 1I19A 1HSKA 2EXRA 5ADZA 5FXPA 1N61C 1FFVC 1JROA 3FW8A 5HMRA 1W1JA 5FXFA 3NS1B 1WVEA 2VFRA 3EUB3 5G5GB 3W8XA 2Y08A 2UUVA 3DEDA 1FO4A 2VFUA 2IPIA 3DQ0A 1W1KA 1MBBA 3NVWB 1W1OA 2I0KA 1W1SA 2VFSA 4EC3A 3D2JA 5AWVA 2MBRA 4OALA 2BVFA 4ZOHB 3BW7A 4JAYA 1WYGA 1AHZA 2GQUA 2VAOA
chains in the Genus database with same CATH topology
4BCAA 1F0XA 1QLUA 2AXRA 1E0YA 3FW9A 3S1EA 2O3GA 3AN1A 1FIQB 1V97A 1E8GA 4PVEA 4DNSA 1AHVA 5I1VA 1AHUA 2Q85A 1VAOA 4BBYA 3LAEA 3LLBA 2NQWA 4UD8A 2BVGA 1QLTA 3FW7A 2BVHA 3JS8A 5FXEA 2PLIA 3B9JB 1UXYA 4JB1A 3RJ8A 2P13A 3W8WA 1ZR6A 3NRZB 3NVVB 1E8FA 1VDVA 1N5XA 2W3SA 1ZXIC 1E8HA 1DZNA 5AE2A 3W8ZA 3POPA 1W1LA 3ETRB 3S1CA 4PWCA 4HG0A 3D2HA 4PVHA 3TSHA 5G5HB 2R2ZA 3AM9A 1T3QC 1N5WC 2QKNA 5AE3A 5K8EA 3TX1A 1DIIA 4XLOA 4ML8A 1JRPA 1W1QA 2VFVA 2Y4GA 1N60C 1W1MA 5HQXA 1MBTA 1FFUC 2P4PA 4PWBA 5L6GA 1RM6B 2UUUA 3NVYB 2YVSA 3S1DA 3HRDC 3TSJA 4BC7A 2RK5A 2WDWA 2Y3SA 5L6FA 3S1FA 2R8DA 3PQBA 1SB3B 1N62C 4PZFA 1W1RA 3NVZB 2P3HA 2OAIA 2PLSA 4O95A 4PYTA 5AE1A 2Y3RA 2Q4WA 2W54A 4MLAA 3GSYA 1WVFA 3D2DA 3AMZA 2E3TA 3PM9A 3HSUA 4PVJA 5HHZA 3I99A 3KJMA 5FXDA 3RJAA 3SR6B 3C0PA 2W3RA 4PVKA 2W55A 5D79A 2QPMA 1DIQA 1N63C 3VTEA 2VFTA 3FWAA 5I1WA 2GQTA 4BC9A 1I19A 1HSKA 2EXRA 5ADZA 5FXPA 1N61C 1FFVC 1JROA 3FW8A 5HMRA 1W1JA 5FXFA 3NS1B 1WVEA 2VFRA 3EUB3 5G5GB 3W8XA 2Y08A 2UUVA 3DEDA 1FO4A 2VFUA 2IPIA 3DQ0A 1W1KA 1MBBA 3NVWB 1W1OA 2I0KA 1W1SA 2VFSA 4EC3A 3D2JA 5AWVA 2MBRA 4OALA 2BVFA 4ZOHB 3BW7A 4JAYA 1WYGA 1AHZA 2GQUA 2VAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDW A;  2Y3S A;  5L6F A;  5I1W A;  3PQB A;  5I1V A;  3POP A;  2Y3R A;  2Y08 A;  2UUV A;  5K8E A;  2IPI A;  2Y4G A;  3HSU A;  5AWV A;  3RJA A;  3RJ8 A;  5L6G A;  2UUU A; 
#chains in the Genus database with same CATH topology
 4BCA A;  1F0X A;  1QLU A;  2AXR A;  1E0Y A;  3FW9 A;  3S1E A;  2O3G A;  3AN1 A;  1FIQ B;  1V97 A;  1E8G A;  4PVE A;  4DNS A;  1AHV A;  5I1V A;  1AHU A;  2Q85 A;  1VAO A;  4BBY A;  3LAE A;  3LLB A;  2NQW A;  4UD8 A;  2BVG A;  1QLT A;  3FW7 A;  2BVH A;  3JS8 A;  5FXE A;  2PLI A;  3B9J B;  1UXY A;  4JB1 A;  3RJ8 A;  2P13 A;  3W8W A;  1ZR6 A;  3NRZ B;  3NVV B;  1E8F A;  1VDV A;  1N5X A;  2W3S A;  1ZXI C;  1E8H A;  1DZN A;  5AE2 A;  3W8Z A;  3POP A;  1W1L A;  3ETR B;  3S1C A;  4PWC A;  4HG0 A;  3D2H A;  4PVH A;  3TSH A;  5G5H B;  2R2Z A;  3AM9 A;  1T3Q C;  1N5W C;  2QKN A;  5AE3 A;  5K8E A;  3TX1 A;  1DII A;  4XLO A;  4ML8 A;  1JRP A;  1W1Q A;  2VFV A;  2Y4G A;  1N60 C;  1W1M A;  5HQX A;  1MBT A;  1FFU C;  2P4P A;  4PWB A;  5L6G A;  1RM6 B;  2UUU A;  3NVY B;  2YVS A;  3S1D A;  3HRD C;  3TSJ A;  4BC7 A;  2RK5 A;  2WDW A;  2Y3S A;  5L6F A;  3S1F A;  2R8D A;  3PQB A;  1SB3 B;  1N62 C;  4PZF A;  1W1R A;  3NVZ B;  2P3H A;  2OAI A;  2PLS A;  4O95 A;  4PYT A;  5AE1 A;  2Y3R A;  2Q4W A;  2W54 A;  4MLA A;  3GSY A;  1WVF A;  3D2D A;  3AMZ A;  2E3T A;  3PM9 A;  3HSU A;  4PVJ A;  5HHZ A;  3I99 A;  3KJM A;  5FXD A;  3RJA A;  3SR6 B;  3C0P A;  2W3R A;  4PVK A;  2W55 A;  5D79 A;  2QPM A;  1DIQ A;  1N63 C;  3VTE A;  2VFT A;  3FWA A;  5I1W A;  2GQT A;  4BC9 A;  1I19 A;  1HSK A;  2EXR A;  5ADZ A;  5FXP A;  1N61 C;  1FFV C;  1JRO A;  3FW8 A;  5HMR A;  1W1J A;  5FXF A;  3NS1 B;  1WVE A;  2VFR A;  3EUB 3;  5G5G B;  3W8X A;  2Y08 A;  2UUV A;  3DED A;  1FO4 A;  2VFU A;  2IPI A;  3DQ0 A;  1W1K A;  1MBB A;  3NVW B;  1W1O A;  2I0K A;  1W1S A;  2VFS A;  4EC3 A;  3D2J A;  5AWV A;  2MBR A;  4OAL A;  2BVF A;  4ZOH B;  3BW7 A;  4JAY A;  1WYG A;  1AHZ A;  2GQU A;  2VAO A; 
#chains in the Genus database with same CATH homology
 4BCA A;  1F0X A;  1QLU A;  2AXR A;  1E0Y A;  3FW9 A;  3S1E A;  2O3G A;  3AN1 A;  1FIQ B;  1V97 A;  1E8G A;  4PVE A;  4DNS A;  1AHV A;  5I1V A;  1AHU A;  2Q85 A;  1VAO A;  4BBY A;  3LAE A;  3LLB A;  2NQW A;  4UD8 A;  2BVG A;  1QLT A;  3FW7 A;  2BVH A;  3JS8 A;  5FXE A;  2PLI A;  3B9J B;  1UXY A;  4JB1 A;  3RJ8 A;  2P13 A;  3W8W A;  1ZR6 A;  3NRZ B;  3NVV B;  1E8F A;  1VDV A;  1N5X A;  2W3S A;  1ZXI C;  1E8H A;  1DZN A;  5AE2 A;  3W8Z A;  3POP A;  1W1L A;  3ETR B;  3S1C A;  4PWC A;  4HG0 A;  3D2H A;  4PVH A;  3TSH A;  5G5H B;  2R2Z A;  3AM9 A;  1T3Q C;  1N5W C;  2QKN A;  5AE3 A;  5K8E A;  3TX1 A;  1DII A;  4XLO A;  4ML8 A;  1JRP A;  1W1Q A;  2VFV A;  2Y4G A;  1N60 C;  1W1M A;  5HQX A;  1MBT A;  1FFU C;  2P4P A;  4PWB A;  5L6G A;  1RM6 B;  2UUU A;  3NVY B;  2YVS A;  3S1D A;  3HRD C;  3TSJ A;  4BC7 A;  2RK5 A;  2WDW A;  2Y3S A;  5L6F A;  3S1F A;  2R8D A;  3PQB A;  1SB3 B;  1N62 C;  4PZF A;  1W1R A;  3NVZ B;  2P3H A;  2OAI A;  2PLS A;  4O95 A;  4PYT A;  5AE1 A;  2Y3R A;  2Q4W A;  2W54 A;  4MLA A;  3GSY A;  1WVF A;  3D2D A;  3AMZ A;  2E3T A;  3PM9 A;  3HSU A;  4PVJ A;  5HHZ A;  3I99 A;  3KJM A;  5FXD A;  3RJA A;  3SR6 B;  3C0P A;  2W3R A;  4PVK A;  2W55 A;  5D79 A;  2QPM A;  1DIQ A;  1N63 C;  3VTE A;  2VFT A;  3FWA A;  5I1W A;  2GQT A;  4BC9 A;  1I19 A;  1HSK A;  2EXR A;  5ADZ A;  5FXP A;  1N61 C;  1FFV C;  1JRO A;  3FW8 A;  5HMR A;  1W1J A;  5FXF A;  3NS1 B;  1WVE A;  2VFR A;  3EUB 3;  5G5G B;  3W8X A;  2Y08 A;  2UUV A;  3DED A;  1FO4 A;  2VFU A;  2IPI A;  3DQ0 A;  1W1K A;  1MBB A;  3NVW B;  1W1O A;  2I0K A;  1W1S A;  2VFS A;  4EC3 A;  3D2J A;  5AWV A;  2MBR A;  4OAL A;  2BVF A;  4ZOH B;  3BW7 A;  4JAY A;  1WYG A;  1AHZ A;  2GQU A;  2VAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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