2Y3SA

Structure of the tirandamycine-bound fad-dependent tirandamycin oxidase taml in c2 space group
Total Genus 167
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
497
structure length
497
Chain Sequence
IDSVAPGDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSAVGFDEERGAFAVEAGATLGAVYKTLFRVWGVTLPGGACPDVGAGGHILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAEADVPPEPGRLLPRPPAEVLLNTTVWPWEGLDEAAFARLVRNHGRWFEQNSGPDSPWCDLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHSDTRRLPWLHSTRWPGIAGDGDMTGRAKIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGVVALIAYGGKVNAVPADRTAVAQRDSILKIVYVTTWEDPAQDPVHVRWIRELYRDVYADTGGVPVPGGAADGAYVNYPDVDLADEEWNTSGVPWSELYYKDAYPRLQAVKARWDPRNVFRHALSVRVPPA
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Streptomyces sp. 307-9
publication title Tirandamycin Biosynthesis is Mediated by Co-Dependent Oxidative Enzymes
pubmed doi rcsb
molecule keywords TAML
total genus 167
structure length 497
sequence length 497
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2y3sA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2y3sA02
3W8ZA 3W8WA 4PVKA 2WDWA 5L6GA 5K8EA 2Y08A 2Y4GA 4PWCA 3D2DA 3TSHA 3GSYA 3FW8A 5I1VA 2IPIA 4PVHA 4PZFA 4UD8A 2UUVA 2AXRA 2BVFA 2UUUA 3PQBA 3RJAA 3VTEA 4PVJA 1ZR6A 3D2HA 3POPA 2Y3RA 3HSUA 5I1WA 4EC3A 5AWVA 3RJ8A 3FWAA 5D79A 5L6FA 4DNSA 2BVHA 3FW9A 3D2JA 4XLOA 2Y3SA 4PVEA 4PWBA 3W8XA 3FW7A 2BVGA 3TSJA
chains in the Genus database with same CATH superfamily
2Q4WA 1JROA 4PWCA 1FFUC 4BC7A 5I1VA 2VFSA 2IPIA 2E3TA 2P4PA 2AXRA 2R8DA 2UUUA 2VFRA 4JB1A 1FFVC 5AE3A 1W1SA 2Y3RA 3HSUA 5FXPA 1UXYA 4PYTA 2EXRA 2VFUA 3NS1B 5G5GB 5L6FA 4BBYA 2I0KA 1DZNA 3NVVB 1AHVA 3FW9A 2VFVA 2PLSA 2BVGA 3W8ZA 4BC9A 3PM9A 1QLUA 2W54A 2Y08A 3BW7A 4ZOHB 3D2DA 4ML8A 3S1FA 2PLIA 1N60C 3NVZB 2QPMA 3NRZB 1E0YA 1N62C 4PZFA 3NVWB 3KJMA 2BVFA 4HG0A 2GQUA 3PQBA 3AM9A 1MBTA 5FXEA 4OALA 3AN1A 3EUB3 3POPA 1I19A 1W1LA 3TX1A 1AHUA 3SR6B 4EC3A 2Q85A 3NVYB 3FWAA 5D79A 1E8GA 2R2ZA 5HQXA 1W1JA 2BVHA 3LAEA 1T3QC 2Y3SA 1W1QA 2QKNA 3S1DA 1JRPA 1MBBA 3W8WA 3JS8A 2WDWA 1QLTA 5L6GA 3C0PA 2Y4GA 1SB3B 1RM6B 3AMZA 3TSHA 2W3SA 3FW8A 4BCAA 5FXFA 2VFTA 4PVHA 1N5XA 3FW7A 2MBRA 2UUVA 3S1CA 3ETRB 1ZXIC 3RJAA 1E8HA 2O3GA 4PVJA 5ADZA 1V97A 4JAYA 2W55A 1W1OA 1W1MA 1E8FA 1FIQB 3DEDA 1N5WC 3LLBA 1W1RA 2P13A 5FXDA 3DQ0A 3HRDC 4PVEA 4PWBA 1WVFA 5G5HB 3TSJA 2OAIA 1W1KA 1VDVA 4PVKA 1HSKA 2W3RA 5K8EA 1F0XA 1DIIA 4MLAA 2GQTA 1WVEA 3GSYA 3B9JB 3S1EA 1WYGA 4UD8A 4O95A 5HMRA 2NQWA 3VTEA 2RK5A 2YVSA 1ZR6A 3D2HA 5AE2A 1VAOA 5I1WA 5AWVA 3RJ8A 3I99A 1DIQA 2VAOA 4DNSA 1N63C 1N61C 3D2JA 4XLOA 5HHZA 1FO4A 3W8XA 1AHZA 5AE1A 2P3HA
chains in the Genus database with same CATH topology
2Q4WA 1JROA 4PWCA 1FFUC 4BC7A 5I1VA 2VFSA 2IPIA 2E3TA 2P4PA 2AXRA 2R8DA 2UUUA 2VFRA 4JB1A 1FFVC 5AE3A 1W1SA 2Y3RA 3HSUA 5FXPA 1UXYA 4PYTA 2EXRA 2VFUA 3NS1B 5G5GB 5L6FA 4BBYA 2I0KA 1DZNA 3NVVB 1AHVA 3FW9A 2VFVA 2PLSA 2BVGA 3W8ZA 4BC9A 3PM9A 1QLUA 2W54A 2Y08A 3BW7A 4ZOHB 3D2DA 4ML8A 3S1FA 2PLIA 1N60C 3NVZB 2QPMA 3NRZB 1E0YA 1N62C 4PZFA 3NVWB 3KJMA 2BVFA 4HG0A 2GQUA 3PQBA 3AM9A 1MBTA 5FXEA 4OALA 3AN1A 3EUB3 3POPA 1I19A 1W1LA 3TX1A 1AHUA 3SR6B 4EC3A 2Q85A 3NVYB 3FWAA 5D79A 1E8GA 2R2ZA 5HQXA 1W1JA 2BVHA 3LAEA 1T3QC 2Y3SA 1W1QA 2QKNA 3S1DA 1JRPA 1MBBA 3W8WA 3JS8A 2WDWA 1QLTA 5L6GA 3C0PA 2Y4GA 1SB3B 1RM6B 3AMZA 3TSHA 2W3SA 3FW8A 4BCAA 5FXFA 2VFTA 4PVHA 1N5XA 3FW7A 2MBRA 2UUVA 3S1CA 3ETRB 1ZXIC 3RJAA 1E8HA 2O3GA 4PVJA 5ADZA 1V97A 4JAYA 2W55A 1W1OA 1W1MA 1E8FA 1FIQB 3DEDA 1N5WC 3LLBA 1W1RA 2P13A 5FXDA 3DQ0A 3HRDC 4PVEA 4PWBA 1WVFA 5G5HB 3TSJA 2OAIA 1W1KA 1VDVA 4PVKA 1HSKA 2W3RA 5K8EA 1F0XA 1DIIA 4MLAA 2GQTA 1WVEA 3GSYA 3B9JB 3S1EA 1WYGA 4UD8A 4O95A 5HMRA 2NQWA 3VTEA 2RK5A 2YVSA 1ZR6A 3D2HA 5AE2A 1VAOA 5I1WA 5AWVA 3RJ8A 3I99A 1DIQA 2VAOA 4DNSA 1N63C 1N61C 3D2JA 4XLOA 5HHZA 1FO4A 3W8XA 1AHZA 5AE1A 2P3HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W8Z A;  3W8W A;  4PVK A;  2WDW A;  5L6G A;  5K8E A;  2Y08 A;  2Y4G A;  4PWC A;  3D2D A;  3TSH A;  3GSY A;  3FW8 A;  5I1V A;  2IPI A;  4PVH A;  4PZF A;  4UD8 A;  2UUV A;  2AXR A;  2BVF A;  2UUU A;  3PQB A;  3RJA A;  3VTE A;  4PVJ A;  1ZR6 A;  3D2H A;  3POP A;  2Y3R A;  3HSU A;  5I1W A;  4EC3 A;  5AWV A;  3RJ8 A;  3FWA A;  5D79 A;  5L6F A;  4DNS A;  2BVH A;  3FW9 A;  3D2J A;  4XLO A;  2Y3S A;  4PVE A;  4PWB A;  3W8X A;  3FW7 A;  2BVG A;  3TSJ A; 
#chains in the Genus database with same CATH topology
 2Q4W A;  1JRO A;  4PWC A;  1FFU C;  4BC7 A;  5I1V A;  2VFS A;  2IPI A;  2E3T A;  2P4P A;  2AXR A;  2R8D A;  2UUU A;  2VFR A;  4JB1 A;  1FFV C;  5AE3 A;  1W1S A;  2Y3R A;  3HSU A;  5FXP A;  1UXY A;  4PYT A;  2EXR A;  2VFU A;  3NS1 B;  5G5G B;  5L6F A;  4BBY A;  2I0K A;  1DZN A;  3NVV B;  1AHV A;  3FW9 A;  2VFV A;  2PLS A;  2BVG A;  3W8Z A;  4BC9 A;  3PM9 A;  1QLU A;  2W54 A;  2Y08 A;  3BW7 A;  4ZOH B;  3D2D A;  4ML8 A;  3S1F A;  2PLI A;  1N60 C;  3NVZ B;  2QPM A;  3NRZ B;  1E0Y A;  1N62 C;  4PZF A;  3NVW B;  3KJM A;  2BVF A;  4HG0 A;  2GQU A;  3PQB A;  3AM9 A;  1MBT A;  5FXE A;  4OAL A;  3AN1 A;  3EUB 3;  3POP A;  1I19 A;  1W1L A;  3TX1 A;  1AHU A;  3SR6 B;  4EC3 A;  2Q85 A;  3NVY B;  3FWA A;  5D79 A;  1E8G A;  2R2Z A;  5HQX A;  1W1J A;  2BVH A;  3LAE A;  1T3Q C;  2Y3S A;  1W1Q A;  2QKN A;  3S1D A;  1JRP A;  1MBB A;  3W8W A;  3JS8 A;  2WDW A;  1QLT A;  5L6G A;  3C0P A;  2Y4G A;  1SB3 B;  1RM6 B;  3AMZ A;  3TSH A;  2W3S A;  3FW8 A;  4BCA A;  5FXF A;  2VFT A;  4PVH A;  1N5X A;  3FW7 A;  2MBR A;  2UUV A;  3S1C A;  3ETR B;  1ZXI C;  3RJA A;  1E8H A;  2O3G A;  4PVJ A;  5ADZ A;  1V97 A;  4JAY A;  2W55 A;  1W1O A;  1W1M A;  1E8F A;  1FIQ B;  3DED A;  1N5W C;  3LLB A;  1W1R A;  2P13 A;  5FXD A;  3DQ0 A;  3HRD C;  4PVE A;  4PWB A;  1WVF A;  5G5H B;  3TSJ A;  2OAI A;  1W1K A;  1VDV A;  4PVK A;  1HSK A;  2W3R A;  5K8E A;  1F0X A;  1DII A;  4MLA A;  2GQT A;  1WVE A;  3GSY A;  3B9J B;  3S1E A;  1WYG A;  4UD8 A;  4O95 A;  5HMR A;  2NQW A;  3VTE A;  2RK5 A;  2YVS A;  1ZR6 A;  3D2H A;  5AE2 A;  1VAO A;  5I1W A;  5AWV A;  3RJ8 A;  3I99 A;  1DIQ A;  2VAO A;  4DNS A;  1N63 C;  1N61 C;  3D2J A;  4XLO A;  5HHZ A;  1FO4 A;  3W8X A;  1AHZ A;  5AE1 A;  2P3H A; 
#chains in the Genus database with same CATH homology
 2Q4W A;  1JRO A;  4PWC A;  1FFU C;  4BC7 A;  5I1V A;  2VFS A;  2IPI A;  2E3T A;  2P4P A;  2AXR A;  2R8D A;  2UUU A;  2VFR A;  4JB1 A;  1FFV C;  5AE3 A;  1W1S A;  2Y3R A;  3HSU A;  5FXP A;  1UXY A;  4PYT A;  2EXR A;  2VFU A;  3NS1 B;  5G5G B;  5L6F A;  4BBY A;  2I0K A;  1DZN A;  3NVV B;  1AHV A;  3FW9 A;  2VFV A;  2PLS A;  2BVG A;  3W8Z A;  4BC9 A;  3PM9 A;  1QLU A;  2W54 A;  2Y08 A;  3BW7 A;  4ZOH B;  3D2D A;  4ML8 A;  3S1F A;  2PLI A;  1N60 C;  3NVZ B;  2QPM A;  3NRZ B;  1E0Y A;  1N62 C;  4PZF A;  3NVW B;  3KJM A;  2BVF A;  4HG0 A;  2GQU A;  3PQB A;  3AM9 A;  1MBT A;  5FXE A;  4OAL A;  3AN1 A;  3EUB 3;  3POP A;  1I19 A;  1W1L A;  3TX1 A;  1AHU A;  3SR6 B;  4EC3 A;  2Q85 A;  3NVY B;  3FWA A;  5D79 A;  1E8G A;  2R2Z A;  5HQX A;  1W1J A;  2BVH A;  3LAE A;  1T3Q C;  2Y3S A;  1W1Q A;  2QKN A;  3S1D A;  1JRP A;  1MBB A;  3W8W A;  3JS8 A;  2WDW A;  1QLT A;  5L6G A;  3C0P A;  2Y4G A;  1SB3 B;  1RM6 B;  3AMZ A;  3TSH A;  2W3S A;  3FW8 A;  4BCA A;  5FXF A;  2VFT A;  4PVH A;  1N5X A;  3FW7 A;  2MBR A;  2UUV A;  3S1C A;  3ETR B;  1ZXI C;  3RJA A;  1E8H A;  2O3G A;  4PVJ A;  5ADZ A;  1V97 A;  4JAY A;  2W55 A;  1W1O A;  1W1M A;  1E8F A;  1FIQ B;  3DED A;  1N5W C;  3LLB A;  1W1R A;  2P13 A;  5FXD A;  3DQ0 A;  3HRD C;  4PVE A;  4PWB A;  1WVF A;  5G5H B;  3TSJ A;  2OAI A;  1W1K A;  1VDV A;  4PVK A;  1HSK A;  2W3R A;  5K8E A;  1F0X A;  1DII A;  4MLA A;  2GQT A;  1WVE A;  3GSY A;  3B9J B;  3S1E A;  1WYG A;  4UD8 A;  4O95 A;  5HMR A;  2NQW A;  3VTE A;  2RK5 A;  2YVS A;  1ZR6 A;  3D2H A;  5AE2 A;  1VAO A;  5I1W A;  5AWV A;  3RJ8 A;  3I99 A;  1DIQ A;  2VAO A;  4DNS A;  1N63 C;  1N61 C;  3D2J A;  4XLO A;  5HHZ A;  1FO4 A;  3W8X A;  1AHZ A;  5AE1 A;  2P3H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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