The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
162
|
sequence length |
500
|
structure length |
500
|
Chain Sequence |
AEAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A concerted mechanism for berberine bridge enzyme
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Eschscholzia californica
|
| molecule keywords |
berberine bridge-forming enzyme
|
| total genus |
162
|
| structure length |
500
|
| sequence length |
500
|
| ec nomenclature |
ec
1.21.3.3: Reticuline oxidase. |
| pdb deposition date | 2008-05-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01565 | FAD_binding_4 | FAD binding domain |
| A | PF08031 | BBE | Berberine and berberine like |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | ||
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase; Chain A, domain 3 | Vanillyl-alcohol Oxidase; Chain A, domain 3 |
#chains in the Genus database with same CATH superfamily 5L6G A; 3BW7 A; 5FXF A; 4PVK A; 1DZN A; 2VFU A; 2Q85 A; 4PWC A; 2Q4W A; 3D2H A; 4BC7 A; 4PVH A; 3B9J B; 2AXR A; 2QPM A; 3POP A; 2BVF A; 1N5W C; 4JB1 A; 1QLU A; 5I1V A; 3JS8 A; 1MBT A; 1WVF A; 1MBB A; 3D2D A; 3W8Z A; 2QKN A; 3EUB 3; 4PVE A; 5I1W A; 4ML8 A; 2W55 A; 2VFT A; 5K8E A; 1WYG A; 2E3T A; 2VAO A; 1N62 C; 5L6F A; 1ZR6 A; 1WVE A; 2WDW A; 3FWA A; 2BVG A; 3TSH A; 2Y3S A; 1W1J A; 4BC9 A; 3W8W A; 4O95 A; 4PZF A; 3S1C A; 4ZOH B; 4XLO A; 5AE2 A; 4DNS A; 2W3S A; 2IPI A; 5HHZ A; 1QLT A; 4PVJ A; 4OAL A; 1N63 C; 1E8F A; 4JAY A; 1AHV A; 3C0P A; 1VDV A; 4PYT A; 3AMZ A; 3TSJ A; 1HSK A; 2BVH A; 3AN1 A; 2Y3R A; 1FO4 A; 1E8G A; 1W1S A; 5HMR A; 2W54 A; 2EXR A; 4BBY A; 3S1E A; 4PWB A; 1E0Y A; 5AE1 A; 1FFV C; 1UXY A; 3DQ0 A; 1E8H A; 3FW8 A; 1W1L A; 5AE3 A; 3S1D A; 1ZXI C; 2VFS A; 3AM9 A; 1N60 C; 1AHU A; 3NRZ B; 5FXP A; 1VAO A; 1DIQ A; 3NVZ B; 3RJA A; 1T3Q C; 2GQT A; 3I99 A; 1FIQ B; 2W3R A; 1I19 A; 3SR6 B; 1W1R A; 1V97 A; 2VFV A; 1W1O A; 5FXE A; 1N61 C; 3HSU A; 3FW9 A; 1DII A; 5D79 A; 5FXD A; 3KJM A; 4UD8 A; 3ETR B; 2MBR A; 3TX1 A; 4EC3 A; 2Y08 A; 3VTE A; 2Y4G A; 4MLA A; 1N5X A; 5ADZ A; 1F0X A; 1JRO A; 1W1K A; 2VFR A; 5HQX A; 3GSY A; 1W1M A; 2I0K A; 1W1Q A; 3D2J A; 3PM9 A; 3FW7 A; 3NS1 B; 3W8X A; 3PQB A; 1FFU C; 5AWV A; 4BCA A; 3S1F A; 3RJ8 A; 2GQU A; 1AHZ A; #chains in the Genus database with same CATH topology 5L6G A; 3BW7 A; 5FXF A; 4PVK A; 1DZN A; 2VFU A; 2Q85 A; 4PWC A; 2Q4W A; 3D2H A; 4BC7 A; 4PVH A; 3NVW B; 3B9J B; 2AXR A; 2QPM A; 3POP A; 2BVF A; 1N5W C; 4JB1 A; 1QLU A; 1JRP A; 2NQW A; 2O3G A; 4HG0 A; 3JS8 A; 2PLI A; 1MBT A; 1WVF A; 5I1V A; 1MBB A; 3D2D A; 3W8Z A; 2QKN A; 3EUB 3; 4PVE A; 5I1W A; 4ML8 A; 2W55 A; 2VFT A; 5K8E A; 1WYG A; 2E3T A; 2VAO A; 1N62 C; 5L6F A; 1ZR6 A; 1WVE A; 2WDW A; 3FWA A; 2BVG A; 3TSH A; 2Y3S A; 1W1J A; 3EJD B; 2R2Z A; 4BC9 A; 3W8W A; 4O95 A; 4PZF A; 3EJE B; 3S1C A; 4ZOH B; 4XLO A; 5AE2 A; 4DNS A; 2W3S A; 2IPI A; 5HHZ A; 1QLT A; 4PVJ A; 4OAL A; 1N63 C; 1E8F A; 4JAY A; 1AHV A; 3C0P A; 1VDV A; 4PYT A; 3AMZ A; 3TSJ A; 1HSK A; 2BVH A; 2R8D A; 2RK5 A; 3HRD C; 3AN1 A; 2Y3R A; 1FO4 A; 1E8G A; 1W1S A; 5G5H B; 5HMR A; 2W54 A; 2EXR A; 4BBY A; 3S1E A; 4PWB A; 3DED A; 1E0Y A; 5AE1 A; 1FFV C; 1UXY A; 3DQ0 A; 1E8H A; 3FW8 A; 1W1L A; 5AE3 A; 3S1D A; 5G5G B; 1ZXI C; 2YVS A; 2P3H A; 2VFS A; 3AM9 A; 1N60 C; 1AHU A; 3NRZ B; 5FXP A; 1VAO A; 2UUV A; 1DIQ A; 3NVZ B; 3RJA A; 2PLS A; 1T3Q C; 2GQT A; 3I99 A; 1FIQ B; 3EJB B; 2W3R A; 1I19 A; 3SR6 B; 1SB3 B; 1W1R A; 1V97 A; 2VFV A; 1W1O A; 5FXE A; 2P4P A; 1N61 C; 1RM6 B; 3HSU A; 3FW9 A; 1DII A; 5D79 A; 5FXD A; 2P13 A; 3KJM A; 4UD8 A; 3ETR B; 2MBR A; 3TX1 A; 4EC3 A; 2OAI A; 2Y08 A; 3LAE A; 3VTE A; 2Y4G A; 4MLA A; 1N5X A; 5ADZ A; 1F0X A; 1JRO A; 1W1K A; 2VFR A; 3NVY B; 3LLB A; 5HQX A; 2UUU A; 3GSY A; 1W1M A; 2I0K A; 1W1Q A; 3D2J A; 3PM9 A; 3FW7 A; 3NS1 B; 3W8X A; 3PQB A; 3NVV B; 1FFU C; 5AWV A; 4BCA A; 3S1F A; 3RJ8 A; 2GQU A; 1AHZ A; #chains in the Genus database with same CATH homology 5L6G A; 3BW7 A; 5FXF A; 4PVK A; 1DZN A; 2VFU A; 2Q85 A; 4PWC A; 2Q4W A; 3D2H A; 4BC7 A; 4PVH A; 3NVW B; 3B9J B; 2AXR A; 2QPM A; 3POP A; 2BVF A; 1N5W C; 4JB1 A; 1QLU A; 1JRP A; 2NQW A; 2O3G A; 4HG0 A; 3JS8 A; 2PLI A; 1MBT A; 1WVF A; 5I1V A; 1MBB A; 3D2D A; 3W8Z A; 2QKN A; 3EUB 3; 4PVE A; 5I1W A; 4ML8 A; 2W55 A; 2VFT A; 5K8E A; 1WYG A; 2E3T A; 2VAO A; 1N62 C; 5L6F A; 1ZR6 A; 1WVE A; 2WDW A; 3FWA A; 2BVG A; 3TSH A; 2Y3S A; 1W1J A; 2R2Z A; 4BC9 A; 3W8W A; 4O95 A; 4PZF A; 3S1C A; 4ZOH B; 4XLO A; 5AE2 A; 4DNS A; 2W3S A; 2IPI A; 5HHZ A; 1QLT A; 4PVJ A; 4OAL A; 1N63 C; 1E8F A; 4JAY A; 1AHV A; 3C0P A; 1VDV A; 4PYT A; 3AMZ A; 3TSJ A; 1HSK A; 2BVH A; 2R8D A; 2RK5 A; 3HRD C; 3AN1 A; 2Y3R A; 1FO4 A; 1E8G A; 1W1S A; 5G5H B; 5HMR A; 2W54 A; 2EXR A; 4BBY A; 3S1E A; 4PWB A; 3DED A; 1E0Y A; 5AE1 A; 1FFV C; 1UXY A; 3DQ0 A; 1E8H A; 3FW8 A; 1W1L A; 5AE3 A; 3S1D A; 5G5G B; 1ZXI C; 2YVS A; 2P3H A; 2VFS A; 3AM9 A; 1N60 C; 1AHU A; 3NRZ B; 5FXP A; 1VAO A; 2UUV A; 1DIQ A; 3NVZ B; 3RJA A; 2PLS A; 1T3Q C; 2GQT A; 3I99 A; 1FIQ B; 2W3R A; 1I19 A; 3SR6 B; 1SB3 B; 1W1R A; 1V97 A; 2VFV A; 1W1O A; 5FXE A; 2P4P A; 1N61 C; 1RM6 B; 3HSU A; 3FW9 A; 1DII A; 5D79 A; 5FXD A; 2P13 A; 3KJM A; 4UD8 A; 3ETR B; 2MBR A; 3TX1 A; 4EC3 A; 2OAI A; 2Y08 A; 3LAE A; 3VTE A; 2Y4G A; 4MLA A; 1N5X A; 5ADZ A; 1F0X A; 1JRO A; 1W1K A; 2VFR A; 3LLB A; 3NVY B; 5HQX A; 2UUU A; 3GSY A; 1W1M A; 2I0K A; 1W1Q A; 3D2J A; 3PM9 A; 3FW7 A; 3NS1 B; 3W8X A; 3PQB A; 3NVV B; 1FFU C; 5AWV A; 4BCA A; 3S1F A; 3RJ8 A; 2GQU A; 1AHZ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
