3LLBA

The crystal structure of the protein pa3983 with unknown function from pseudomonas aeruginosa pao1
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
81
structure length
81
Chain Sequence
SYIKPLPSGDFIVKALTPVDAFNDFFGSEFSDEEFDTVGGLVMSAFGHLPKRNEVVELGEFRFRVLNADSRRVHLLRLSPL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The crystal structure of the protein NE1376 with unknown function from Nitrosomonas europaea ATCC 19718
rcsb
molecule tags Structural genomics, unknown function
source organism Pseudomonas aeruginosa
molecule keywords Uncharacterized protein
total genus 18
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03471 CorC_HlyC Transporter associated domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3llbA00
1E8GA 4BC7A 2BVHA 3S1FA 3W8XA 1W1SA 1N61C 2W3RA 3AM9A 2QPMA 2VFTA 3NRZB 2P4PA 2QKNA 5AE2A 1W1JA 3AMZA 4JAYA 1T3QC 3JS8A 5FXDA 3I99A 3BW7A 1RM6B 5G5HB 3NVZB 4PYTA 4MLAA 1ZR6A 1FFVC 2PLIA 1DZNA 2Q85A 2VFSA 1N63C 2P13A 3S1CA 1MBTA 5G5GB 1E8FA 1WVFA 2BVGA 2I0KA 2W3SA 3S1DA 1W1LA 5HQXA 1N5XA 4O95A 1W1QA 2VAOA 5AE3A 5FXPA 4ML8A 3S1EA 1FIQB 3TX1A 2AXRA 1N60C 1W1KA 2OAIA 3C0PA 1V97A 1I19A 3LLBA 1QLUA 1F0XA 2E3TA 1QLTA 1W1RA 4ZOHB 1ZXIC 1VDVA 1HSKA 3NVWB 3PM9A 1W1MA 2W54A 3HRDC 4BBYA 5FXFA 1E8HA 1AHVA 1DIQA 2VFRA 3DEDA 3NVYB 3KJMA 2O3GA 1WVEA 1FO4A 5ADZA 2GQTA 2BVFA 4OALA 5HHZA 3NS1B 4HG0A 4BC9A 1VAOA 1N62C 2VFUA 1UXYA 3NVVB 3AN1A 3W8ZA 2W55A 1SB3B 1MBBA 1W1OA 3DQ0A 2RK5A 3W8WA 1AHUA 2YVSA 3ETRB 2VFVA 2GQUA 3LAEA 1JRPA 3B9JB 5FXEA 2PLSA 2R2ZA 2NQWA 5AE1A 2R8DA 2Q4WA 2EXRA 5HMRA 1AHZA 1N5WC 1JROA 3EUB3 4JB1A 4XLOA 4BCAA 3SR6B 1E0YA 1DIIA 1FFUC 2P3HA 2MBRA 1WYGA
chains in the Genus database with same CATH superfamily
1E8GA 2Y4GA 4BC7A 2BVHA 3S1FA 4DNSA 3W8XA 1W1SA 1N61C 5D79A 2W3RA 5AWVA 3AM9A 2QPMA 3GSYA 2VFTA 3NRZB 2P4PA 3D2JA 2QKNA 5AE2A 3FW7A 1W1JA 3AMZA 4JAYA 1T3QC 5L6GA 3JS8A 5FXDA 3I99A 3BW7A 4PVEA 1RM6B 5G5HB 3NVZB 3TSJA 4PYTA 4MLAA 1ZR6A 1FFVC 2PLIA 1DZNA 2Q85A 2VFSA 1N63C 2P13A 3S1CA 1MBTA 5G5GB 3PQBA 1E8FA 1WVFA 2BVGA 2I0KA 2W3SA 3D2DA 1W1LA 3S1DA 5HQXA 1N5XA 4O95A 1W1QA 4EC3A 2VAOA 5AE3A 5FXPA 4ML8A 3S1EA 1FIQB 2Y3RA 3TX1A 2AXRA 1N60C 1W1KA 3HSUA 2OAIA 3C0PA 3RJ8A 1V97A 1I19A 3LLBA 3TSHA 5L6FA 1QLUA 4UD8A 2UUVA 1F0XA 2E3TA 1QLTA 5K8EA 1W1RA 4ZOHB 2IPIA 5I1VA 1ZXIC 1VDVA 1HSKA 3NVWB 3PM9A 1W1MA 2W54A 3HRDC 4BBYA 5I1WA 2UUUA 5FXFA 4PVJA 1E8HA 1AHVA 1DIQA 2VFRA 3DEDA 3NVYB 4PZFA 3KJMA 2O3GA 2Y3SA 1WVEA 1FO4A 5ADZA 4PVHA 2GQTA 2BVFA 4OALA 5HHZA 3NS1B 4HG0A 4BC9A 3VTEA 1VAOA 1N62C 2VFUA 1UXYA 3NVVB 3AN1A 3W8ZA 2W55A 1SB3B 2WDWA 1MBBA 3FW9A 3D2HA 1W1OA 3DQ0A 4PVKA 3FW8A 2RK5A 3W8WA 1AHUA 2YVSA 3ETRB 2VFVA 2GQUA 3LAEA 1JRPA 3B9JB 5FXEA 3RJAA 2PLSA 2R2ZA 3FWAA 2NQWA 5AE1A 2R8DA 2Q4WA 2Y08A 2EXRA 5HMRA 1AHZA 4PWCA 1N5WC 4PWBA 1JROA 3POPA 3EUB3 4JB1A 4XLOA 4BCAA 3SR6B 1E0YA 1DIIA 1FFUC 2P3HA 2MBRA 1WYGA
chains in the Genus database with same CATH topology
1E8GA 2Y4GA 4BC7A 2BVHA 3S1FA 4DNSA 3W8XA 1W1SA 1N61C 5D79A 2W3RA 5AWVA 3AM9A 2QPMA 3GSYA 2VFTA 3NRZB 2P4PA 3D2JA 2QKNA 5AE2A 3FW7A 1W1JA 3AMZA 4JAYA 1T3QC 5L6GA 3JS8A 5FXDA 3I99A 3BW7A 4PVEA 1RM6B 5G5HB 3NVZB 3TSJA 4PYTA 4MLAA 1ZR6A 1FFVC 2PLIA 1DZNA 2Q85A 2VFSA 1N63C 2P13A 3S1CA 1MBTA 5G5GB 3PQBA 1E8FA 1WVFA 2BVGA 2I0KA 2W3SA 3D2DA 1W1LA 3S1DA 5HQXA 1N5XA 4O95A 1W1QA 4EC3A 2VAOA 5AE3A 5FXPA 4ML8A 3S1EA 1FIQB 2Y3RA 3TX1A 2AXRA 1N60C 1W1KA 3HSUA 2OAIA 3C0PA 3RJ8A 1V97A 1I19A 3LLBA 3TSHA 5L6FA 1QLUA 4UD8A 2UUVA 1F0XA 2E3TA 1QLTA 5K8EA 1W1RA 4ZOHB 2IPIA 5I1VA 1ZXIC 1VDVA 1HSKA 3NVWB 3PM9A 1W1MA 2W54A 3HRDC 4BBYA 5I1WA 2UUUA 5FXFA 4PVJA 1E8HA 1AHVA 1DIQA 2VFRA 3DEDA 3NVYB 4PZFA 3KJMA 2O3GA 2Y3SA 1WVEA 1FO4A 5ADZA 4PVHA 2GQTA 2BVFA 4OALA 5HHZA 3NS1B 4HG0A 4BC9A 3VTEA 1VAOA 1N62C 2VFUA 1UXYA 3NVVB 3AN1A 3W8ZA 2W55A 1SB3B 2WDWA 1MBBA 3FW9A 3D2HA 1W1OA 3DQ0A 4PVKA 3FW8A 2RK5A 3W8WA 1AHUA 2YVSA 3ETRB 2VFVA 2GQUA 3LAEA 1JRPA 3B9JB 5FXEA 3RJAA 2PLSA 2R2ZA 3FWAA 2NQWA 5AE1A 2R8DA 2Q4WA 2Y08A 2EXRA 5HMRA 1AHZA 4PWCA 1N5WC 4PWBA 1JROA 3POPA 3EUB3 4JB1A 4XLOA 4BCAA 3SR6B 1E0YA 1DIIA 1FFUC 2P3HA 2MBRA 1WYGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E8G A;  4BC7 A;  2BVH A;  3S1F A;  3W8X A;  1W1S A;  1N61 C;  2W3R A;  3AM9 A;  2QPM A;  2VFT A;  3NRZ B;  2P4P A;  2QKN A;  5AE2 A;  1W1J A;  3AMZ A;  4JAY A;  1T3Q C;  3JS8 A;  5FXD A;  3I99 A;  3BW7 A;  1RM6 B;  5G5H B;  3NVZ B;  4PYT A;  4MLA A;  1ZR6 A;  1FFV C;  2PLI A;  1DZN A;  2Q85 A;  2VFS A;  1N63 C;  2P13 A;  3S1C A;  1MBT A;  5G5G B;  1E8F A;  1WVF A;  2BVG A;  2I0K A;  2W3S A;  3S1D A;  1W1L A;  5HQX A;  1N5X A;  4O95 A;  1W1Q A;  2VAO A;  5AE3 A;  5FXP A;  4ML8 A;  3S1E A;  1FIQ B;  3TX1 A;  2AXR A;  1N60 C;  1W1K A;  2OAI A;  3C0P A;  1V97 A;  1I19 A;  3LLB A;  1QLU A;  1F0X A;  2E3T A;  1QLT A;  1W1R A;  4ZOH B;  1ZXI C;  1VDV A;  1HSK A;  3NVW B;  3PM9 A;  1W1M A;  2W54 A;  3HRD C;  4BBY A;  5FXF A;  1E8H A;  1AHV A;  1DIQ A;  2VFR A;  3DED A;  3NVY B;  3KJM A;  2O3G A;  1WVE A;  1FO4 A;  5ADZ A;  2GQT A;  2BVF A;  4OAL A;  5HHZ A;  3NS1 B;  4HG0 A;  4BC9 A;  1VAO A;  1N62 C;  2VFU A;  1UXY A;  3NVV B;  3AN1 A;  3W8Z A;  2W55 A;  1SB3 B;  1MBB A;  1W1O A;  3DQ0 A;  2RK5 A;  3W8W A;  1AHU A;  2YVS A;  3ETR B;  2VFV A;  2GQU A;  3LAE A;  1JRP A;  3B9J B;  5FXE A;  2PLS A;  2R2Z A;  2NQW A;  5AE1 A;  2R8D A;  2Q4W A;  2EXR A;  5HMR A;  1AHZ A;  1N5W C;  1JRO A;  3EUB 3;  4JB1 A;  4XLO A;  4BCA A;  3SR6 B;  1E0Y A;  1DII A;  1FFU C;  2P3H A;  2MBR A;  1WYG A; 
#chains in the Genus database with same CATH topology
 1E8G A;  2Y4G A;  4BC7 A;  2BVH A;  3S1F A;  4DNS A;  3W8X A;  1W1S A;  1N61 C;  5D79 A;  2W3R A;  5AWV A;  3AM9 A;  2QPM A;  3GSY A;  2VFT A;  3NRZ B;  2P4P A;  3D2J A;  2QKN A;  5AE2 A;  3FW7 A;  1W1J A;  3AMZ A;  4JAY A;  1T3Q C;  5L6G A;  3JS8 A;  5FXD A;  3I99 A;  3BW7 A;  4PVE A;  1RM6 B;  5G5H B;  3NVZ B;  3TSJ A;  4PYT A;  4MLA A;  1ZR6 A;  1FFV C;  2PLI A;  1DZN A;  2Q85 A;  2VFS A;  1N63 C;  2P13 A;  3S1C A;  1MBT A;  5G5G B;  3PQB A;  1E8F A;  1WVF A;  2BVG A;  2I0K A;  2W3S A;  3D2D A;  1W1L A;  3S1D A;  5HQX A;  1N5X A;  4O95 A;  1W1Q A;  4EC3 A;  2VAO A;  5AE3 A;  5FXP A;  4ML8 A;  3S1E A;  1FIQ B;  2Y3R A;  3TX1 A;  2AXR A;  1N60 C;  1W1K A;  3HSU A;  2OAI A;  3C0P A;  3RJ8 A;  1V97 A;  1I19 A;  3LLB A;  3TSH A;  5L6F A;  1QLU A;  4UD8 A;  2UUV A;  1F0X A;  2E3T A;  1QLT A;  5K8E A;  1W1R A;  4ZOH B;  2IPI A;  5I1V A;  1ZXI C;  1VDV A;  1HSK A;  3NVW B;  3PM9 A;  1W1M A;  2W54 A;  3HRD C;  4BBY A;  5I1W A;  2UUU A;  5FXF A;  4PVJ A;  1E8H A;  1AHV A;  1DIQ A;  2VFR A;  3DED A;  3NVY B;  4PZF A;  3KJM A;  2O3G A;  2Y3S A;  1WVE A;  1FO4 A;  5ADZ A;  4PVH A;  2GQT A;  2BVF A;  4OAL A;  5HHZ A;  3NS1 B;  4HG0 A;  4BC9 A;  3VTE A;  1VAO A;  1N62 C;  2VFU A;  1UXY A;  3NVV B;  3AN1 A;  3W8Z A;  2W55 A;  1SB3 B;  2WDW A;  1MBB A;  3FW9 A;  3D2H A;  1W1O A;  3DQ0 A;  4PVK A;  3FW8 A;  2RK5 A;  3W8W A;  1AHU A;  2YVS A;  3ETR B;  2VFV A;  2GQU A;  3LAE A;  1JRP A;  3B9J B;  5FXE A;  3RJA A;  2PLS A;  2R2Z A;  3FWA A;  2NQW A;  5AE1 A;  2R8D A;  2Q4W A;  2Y08 A;  2EXR A;  5HMR A;  1AHZ A;  4PWC A;  1N5W C;  4PWB A;  1JRO A;  3POP A;  3EUB 3;  4JB1 A;  4XLO A;  4BCA A;  3SR6 B;  1E0Y A;  1DII A;  1FFU C;  2P3H A;  2MBR A;  1WYG A; 
#chains in the Genus database with same CATH homology
 1E8G A;  2Y4G A;  4BC7 A;  2BVH A;  3S1F A;  4DNS A;  3W8X A;  1W1S A;  1N61 C;  5D79 A;  2W3R A;  5AWV A;  3AM9 A;  2QPM A;  3GSY A;  2VFT A;  3NRZ B;  2P4P A;  3D2J A;  2QKN A;  5AE2 A;  3FW7 A;  1W1J A;  3AMZ A;  4JAY A;  1T3Q C;  5L6G A;  3JS8 A;  5FXD A;  3I99 A;  3BW7 A;  4PVE A;  1RM6 B;  5G5H B;  3NVZ B;  3TSJ A;  4PYT A;  4MLA A;  1ZR6 A;  1FFV C;  2PLI A;  1DZN A;  2Q85 A;  2VFS A;  1N63 C;  2P13 A;  3S1C A;  1MBT A;  5G5G B;  3PQB A;  1E8F A;  1WVF A;  2BVG A;  2I0K A;  2W3S A;  3D2D A;  1W1L A;  3S1D A;  5HQX A;  1N5X A;  4O95 A;  1W1Q A;  4EC3 A;  2VAO A;  5AE3 A;  5FXP A;  4ML8 A;  3S1E A;  1FIQ B;  2Y3R A;  3TX1 A;  2AXR A;  1N60 C;  1W1K A;  3HSU A;  2OAI A;  3C0P A;  3RJ8 A;  1V97 A;  1I19 A;  3LLB A;  3TSH A;  5L6F A;  1QLU A;  4UD8 A;  2UUV A;  1F0X A;  2E3T A;  1QLT A;  5K8E A;  1W1R A;  4ZOH B;  2IPI A;  5I1V A;  1ZXI C;  1VDV A;  1HSK A;  3NVW B;  3PM9 A;  1W1M A;  2W54 A;  3HRD C;  4BBY A;  5I1W A;  2UUU A;  5FXF A;  4PVJ A;  1E8H A;  1AHV A;  1DIQ A;  2VFR A;  3DED A;  3NVY B;  4PZF A;  3KJM A;  2O3G A;  2Y3S A;  1WVE A;  1FO4 A;  5ADZ A;  4PVH A;  2GQT A;  2BVF A;  4OAL A;  5HHZ A;  3NS1 B;  4HG0 A;  4BC9 A;  3VTE A;  1VAO A;  1N62 C;  2VFU A;  1UXY A;  3NVV B;  3AN1 A;  3W8Z A;  2W55 A;  1SB3 B;  2WDW A;  1MBB A;  3FW9 A;  3D2H A;  1W1O A;  3DQ0 A;  4PVK A;  3FW8 A;  2RK5 A;  3W8W A;  1AHU A;  2YVS A;  3ETR B;  2VFV A;  2GQU A;  3LAE A;  1JRP A;  3B9J B;  5FXE A;  3RJA A;  2PLS A;  2R2Z A;  3FWA A;  2NQW A;  5AE1 A;  2R8D A;  2Q4W A;  2Y08 A;  2EXR A;  5HMR A;  1AHZ A;  4PWC A;  1N5W C;  4PWB A;  1JRO A;  3POP A;  3EUB 3;  4JB1 A;  4XLO A;  4BCA A;  3SR6 B;  1E0Y A;  1DII A;  1FFU C;  2P3H A;  2MBR A;  1WYG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...