3RJAA

Crystal structure of carbohydrate oxidase from microdochium nivale in complex with substrate analogue
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
473
structure length
473
Chain Sequence
GAIEACLSAAGVPIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENFYAKSLTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHRDKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYATKVYYGENLARLQKLKAKFDPTDRFYYPQAVRPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure and kinetic studies of carbohydrate oxidase from Microdochium nivale
rcsb
molecule tags Oxidoreductase
source organism Microdochium nivale
molecule keywords Carbohydrate oxidase
total genus 172
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.4: Glucose oxidase.
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3rjaA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3rjaA02
5L6GA 3W8WA 3D2JA 4PVHA 2IPIA 3FW9A 3HSUA 3TSHA 1ZR6A 4EC3A 2UUVA 4PWBA 4PVJA 4PVKA 2BVHA 2BVGA 3W8ZA 3FW7A 3GSYA 4PVEA 4UD8A 3VTEA 5I1VA 4XLOA 3D2DA 3FW8A 2Y08A 3D2HA 2Y3SA 4PWCA 5K8EA 5D79A 3FWAA 3RJAA 2UUUA 5I1WA 2BVFA 3RJ8A 3W8XA 4PZFA 5AWVA 4DNSA 2WDWA 5L6FA 3TSJA 2Y3RA 3PQBA 3POPA 2Y4GA 2AXRA
chains in the Genus database with same CATH superfamily
5L6GA 1W1KA 1WYGA 3AMZA 4PVHA 3SR6B 2MBRA 3HSUA 1QLTA 1ZR6A 3TSHA 3C0PA 1ZXIC 3EUB3 3FW7A 3S1EA 2W3RA 4PVEA 3NVVB 5I1VA 5HMRA 3NS1B 1W1JA 1QLUA 2Q4WA 1N60C 1N5WC 2Y3SA 4PWCA 1W1SA 5D79A 1HSKA 1I19A 3RJAA 2BVFA 4PYTA 5AWVA 3ETRB 3LAEA 3TSJA 2YVSA 1W1OA 4MLAA 3NRZB 2PLIA 2QKNA 3AN1A 5G5HB 4JAYA 4PWBA 2OAIA 1JROA 4PVKA 2BVGA 1T3QC 1MBTA 3KJMA 4ML8A 1DIIA 2P3HA 3GSYA 5HQXA 5FXFA 1WVEA 4XLOA 3D2DA 3FW8A 3D2HA 4O95A 5AE3A 4BCAA 5K8EA 1VAOA 1SB3B 1FFVC 1VDVA 2UUUA 1JRPA 3RJ8A 1DZNA 5AE2A 1N5XA 2EXRA 5L6FA 1N62C 2Y3RA 1FO4A 1FFUC 3PQBA 3NVWB 5ADZA 1W1MA 3W8WA 1E8HA 2VFVA 3D2JA 3S1FA 2IPIA 3FW9A 2I0KA 4BC9A 4ZOHB 2P4PA 4EC3A 3NVYB 2UUVA 5FXEA 2VFRA 1UXYA 2GQTA 4HG0A 4UD8A 1E8FA 3VTEA 1MBBA 3HRDC 2Y08A 5G5GB 2O3GA 2VAOA 3JS8A 2VFUA 4OALA 2R8DA 3I99A 1V97A 4PZFA 4DNSA 1N61C 2VFSA 3NVZB 1DIQA 1RM6B 1W1QA 1N63C 3POPA 2Q85A 3B9JB 5FXDA 2W3SA 2P13A 2W54A 4BBYA 1W1RA 2NQWA 5FXPA 4PVJA 2BVHA 1FIQB 2W55A 3DQ0A 5HHZA 1E0YA 3TX1A 3W8ZA 1W1LA 3PM9A 1WVFA 1AHVA 2R2ZA 3DEDA 2VFTA 2PLSA 2GQUA 3S1CA 4BC7A 3LLBA 1E8GA 3BW7A 3FWAA 5I1WA 5AE1A 1F0XA 2QPMA 3W8XA 3S1DA 2WDWA 2RK5A 1AHUA 3AM9A 2E3TA 1AHZA 2Y4GA 4JB1A 2AXRA
chains in the Genus database with same CATH topology
5L6GA 1W1KA 1WYGA 3AMZA 4PVHA 3SR6B 2MBRA 3HSUA 1QLTA 1ZR6A 3TSHA 3C0PA 1ZXIC 3EUB3 3FW7A 3S1EA 2W3RA 4PVEA 3NVVB 5I1VA 5HMRA 3NS1B 1W1JA 1QLUA 2Q4WA 1N60C 1N5WC 2Y3SA 4PWCA 1W1SA 5D79A 1HSKA 1I19A 3RJAA 2BVFA 4PYTA 5AWVA 3ETRB 3LAEA 3TSJA 2YVSA 1W1OA 4MLAA 3NRZB 2PLIA 2QKNA 3AN1A 5G5HB 4JAYA 4PWBA 2OAIA 1JROA 4PVKA 2BVGA 1T3QC 1MBTA 3KJMA 4ML8A 1DIIA 2P3HA 3GSYA 5HQXA 5FXFA 1WVEA 4XLOA 3D2DA 3FW8A 3D2HA 4O95A 5AE3A 4BCAA 5K8EA 1VAOA 1SB3B 1FFVC 1VDVA 2UUUA 1JRPA 3RJ8A 1DZNA 5AE2A 1N5XA 2EXRA 5L6FA 1N62C 2Y3RA 1FO4A 1FFUC 3PQBA 3NVWB 5ADZA 1W1MA 3W8WA 1E8HA 2VFVA 3D2JA 3S1FA 2IPIA 3FW9A 2I0KA 4BC9A 4ZOHB 2P4PA 4EC3A 3NVYB 2UUVA 5FXEA 2VFRA 1UXYA 2GQTA 4HG0A 4UD8A 1E8FA 3VTEA 1MBBA 3HRDC 2Y08A 5G5GB 2O3GA 2VAOA 3JS8A 2VFUA 4OALA 2R8DA 3I99A 1V97A 4PZFA 4DNSA 1N61C 2VFSA 3NVZB 1DIQA 1RM6B 1W1QA 1N63C 3POPA 2Q85A 3B9JB 5FXDA 2W3SA 2P13A 2W54A 4BBYA 1W1RA 2NQWA 5FXPA 4PVJA 2BVHA 1FIQB 2W55A 3DQ0A 5HHZA 1E0YA 3TX1A 3W8ZA 1W1LA 3PM9A 1WVFA 1AHVA 2R2ZA 3DEDA 2VFTA 2PLSA 2GQUA 3S1CA 4BC7A 3LLBA 1E8GA 3BW7A 3FWAA 5I1WA 5AE1A 1F0XA 2QPMA 3W8XA 3S1DA 2WDWA 2RK5A 1AHUA 3AM9A 2E3TA 1AHZA 2Y4GA 4JB1A 2AXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L6G A;  3W8W A;  3D2J A;  4PVH A;  2IPI A;  3FW9 A;  3HSU A;  3TSH A;  1ZR6 A;  4EC3 A;  2UUV A;  4PWB A;  4PVJ A;  4PVK A;  2BVH A;  2BVG A;  3W8Z A;  3FW7 A;  3GSY A;  4PVE A;  4UD8 A;  3VTE A;  5I1V A;  4XLO A;  3D2D A;  3FW8 A;  2Y08 A;  3D2H A;  2Y3S A;  4PWC A;  5K8E A;  5D79 A;  3FWA A;  3RJA A;  2UUU A;  5I1W A;  2BVF A;  3RJ8 A;  3W8X A;  4PZF A;  5AWV A;  4DNS A;  2WDW A;  5L6F A;  3TSJ A;  2Y3R A;  3PQB A;  3POP A;  2Y4G A;  2AXR A; 
#chains in the Genus database with same CATH topology
 5L6G A;  1W1K A;  1WYG A;  3AMZ A;  4PVH A;  3SR6 B;  2MBR A;  3HSU A;  1QLT A;  1ZR6 A;  3TSH A;  3C0P A;  1ZXI C;  3EUB 3;  3FW7 A;  3S1E A;  2W3R A;  4PVE A;  3NVV B;  5I1V A;  5HMR A;  3NS1 B;  1W1J A;  1QLU A;  2Q4W A;  1N60 C;  1N5W C;  2Y3S A;  4PWC A;  1W1S A;  5D79 A;  1HSK A;  1I19 A;  3RJA A;  2BVF A;  4PYT A;  5AWV A;  3ETR B;  3LAE A;  3TSJ A;  2YVS A;  1W1O A;  4MLA A;  3NRZ B;  2PLI A;  2QKN A;  3AN1 A;  5G5H B;  4JAY A;  4PWB A;  2OAI A;  1JRO A;  4PVK A;  2BVG A;  1T3Q C;  1MBT A;  3KJM A;  4ML8 A;  1DII A;  2P3H A;  3GSY A;  5HQX A;  5FXF A;  1WVE A;  4XLO A;  3D2D A;  3FW8 A;  3D2H A;  4O95 A;  5AE3 A;  4BCA A;  5K8E A;  1VAO A;  1SB3 B;  1FFV C;  1VDV A;  2UUU A;  1JRP A;  3RJ8 A;  1DZN A;  5AE2 A;  1N5X A;  2EXR A;  5L6F A;  1N62 C;  2Y3R A;  1FO4 A;  1FFU C;  3PQB A;  3NVW B;  5ADZ A;  1W1M A;  3W8W A;  1E8H A;  2VFV A;  3D2J A;  3S1F A;  2IPI A;  3FW9 A;  2I0K A;  4BC9 A;  4ZOH B;  2P4P A;  4EC3 A;  3NVY B;  2UUV A;  5FXE A;  2VFR A;  1UXY A;  2GQT A;  4HG0 A;  4UD8 A;  1E8F A;  3VTE A;  1MBB A;  3HRD C;  2Y08 A;  5G5G B;  2O3G A;  2VAO A;  3JS8 A;  2VFU A;  4OAL A;  2R8D A;  3I99 A;  1V97 A;  4PZF A;  4DNS A;  1N61 C;  2VFS A;  3NVZ B;  1DIQ A;  1RM6 B;  1W1Q A;  1N63 C;  3POP A;  2Q85 A;  3B9J B;  5FXD A;  2W3S A;  2P13 A;  2W54 A;  4BBY A;  1W1R A;  2NQW A;  5FXP A;  4PVJ A;  2BVH A;  1FIQ B;  2W55 A;  3DQ0 A;  5HHZ A;  1E0Y A;  3TX1 A;  3W8Z A;  1W1L A;  3PM9 A;  1WVF A;  1AHV A;  2R2Z A;  3DED A;  2VFT A;  2PLS A;  2GQU A;  3S1C A;  4BC7 A;  3LLB A;  1E8G A;  3BW7 A;  3FWA A;  5I1W A;  5AE1 A;  1F0X A;  2QPM A;  3W8X A;  3S1D A;  2WDW A;  2RK5 A;  1AHU A;  3AM9 A;  2E3T A;  1AHZ A;  2Y4G A;  4JB1 A;  2AXR A; 
#chains in the Genus database with same CATH homology
 5L6G A;  1W1K A;  1WYG A;  3AMZ A;  4PVH A;  3SR6 B;  2MBR A;  3HSU A;  1QLT A;  1ZR6 A;  3TSH A;  3C0P A;  1ZXI C;  3EUB 3;  3FW7 A;  3S1E A;  2W3R A;  4PVE A;  3NVV B;  5I1V A;  5HMR A;  3NS1 B;  1W1J A;  1QLU A;  2Q4W A;  1N60 C;  1N5W C;  2Y3S A;  4PWC A;  1W1S A;  5D79 A;  1HSK A;  1I19 A;  3RJA A;  2BVF A;  4PYT A;  5AWV A;  3ETR B;  3LAE A;  3TSJ A;  2YVS A;  1W1O A;  4MLA A;  3NRZ B;  2PLI A;  2QKN A;  3AN1 A;  5G5H B;  4JAY A;  4PWB A;  2OAI A;  1JRO A;  4PVK A;  2BVG A;  1T3Q C;  1MBT A;  3KJM A;  4ML8 A;  1DII A;  2P3H A;  3GSY A;  5HQX A;  5FXF A;  1WVE A;  4XLO A;  3D2D A;  3FW8 A;  3D2H A;  4O95 A;  5AE3 A;  4BCA A;  5K8E A;  1VAO A;  1SB3 B;  1FFV C;  1VDV A;  2UUU A;  1JRP A;  3RJ8 A;  1DZN A;  5AE2 A;  1N5X A;  2EXR A;  5L6F A;  1N62 C;  2Y3R A;  1FO4 A;  1FFU C;  3PQB A;  3NVW B;  5ADZ A;  1W1M A;  3W8W A;  1E8H A;  2VFV A;  3D2J A;  3S1F A;  2IPI A;  3FW9 A;  2I0K A;  4BC9 A;  4ZOH B;  2P4P A;  4EC3 A;  3NVY B;  2UUV A;  5FXE A;  2VFR A;  1UXY A;  2GQT A;  4HG0 A;  4UD8 A;  1E8F A;  3VTE A;  1MBB A;  3HRD C;  2Y08 A;  5G5G B;  2O3G A;  2VAO A;  3JS8 A;  2VFU A;  4OAL A;  2R8D A;  3I99 A;  1V97 A;  4PZF A;  4DNS A;  1N61 C;  2VFS A;  3NVZ B;  1DIQ A;  1RM6 B;  1W1Q A;  1N63 C;  3POP A;  2Q85 A;  3B9J B;  5FXD A;  2W3S A;  2P13 A;  2W54 A;  4BBY A;  1W1R A;  2NQW A;  5FXP A;  4PVJ A;  2BVH A;  1FIQ B;  2W55 A;  3DQ0 A;  5HHZ A;  1E0Y A;  3TX1 A;  3W8Z A;  1W1L A;  3PM9 A;  1WVF A;  1AHV A;  2R2Z A;  3DED A;  2VFT A;  2PLS A;  2GQU A;  3S1C A;  4BC7 A;  3LLB A;  1E8G A;  3BW7 A;  3FWA A;  5I1W A;  5AE1 A;  1F0X A;  2QPM A;  3W8X A;  3S1D A;  2WDW A;  2RK5 A;  1AHU A;  3AM9 A;  2E3T A;  1AHZ A;  2Y4G A;  4JB1 A;  2AXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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