3S1C | Genus

Total Genus 163

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	163
sequence length	502
structure length	498
Chain Sequence	PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Zea mays
publication title	Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site. pubmed doi rcsb
molecule keywords	Cytokinin dehydrogenase 1
total genus	163
structure length	498
sequence length	502
ec nomenclature	ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date	2011-05-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF09265	Cytokin-bind	Cytokinin dehydrogenase 1, FAD and cytokinin binding

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	3s1cA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	3s1cA02
3.40.462.10	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	FAD-linked oxidases, C-terminal domain	3s1cA03

3LAEA 1F0XA 1FFUC 4O95A 1E8HA 2VFTA 1DIQA 4ML8A 1FFVC 1SB3B 1W1JA 3DQ0A 5FXFA 3W8ZA 3NVVB 3FW8A 4ZOHB 1E0YA 3NRZB 4BC9A 1W1KA 2OAIA 3GSYA 2P4PA 1QLTA 1VDVA 1UXYA 5FXEA 2E3TA 3AMZA 2QKNA 1W1SA 3KJMA 3EUB3 1E8GA 2W55A 3AM9A 3ETRB 1N61C 4PWBA 1N5XA 1N5WC 2R8DA 4EC3A 3NVWB 3S1DA 2BVGA 2VFUA 2O3GA 1W1MA 2W3SA 2QPMA 5ADZA 4XLOA 1MBBA 1QLUA 4HG0A 4BC7A 1WVFA 1ZR6A 3LLBA 3FWAA 4PVHA 2PLSA 1N62C 2Q4WA 2R2ZA 3PM9A 3S1CA 1HSKA 1W1OA 4PVEA 3TSHA 3S1FA 1AHVA 2BVHA 3S1EA 2YVSA 4OALA 1WYGA 1JRPA 3NS1B 1RM6B 3AN1A 3JS8A 1JROA 3I99A 4MLAA 1VAOA 4PYTA 1N63C 3W8XA 5HHZA 3FW7A 2PLIA 3BW7A 2VFVA 2W54A 1W1LA 4BCAA 5D79A 2I0KA 2AXRA 3D2HA 4PVKA 1MBTA 3DEDA 2RK5A 5G5GB 3TX1A 1W1QA 4PZFA 4JAYA 5FXPA 1I19A 3D2JA 1DZNA 2Q85A 1AHUA 4UD8A 4PWCA 1V97A 5AE2A 3B9JB 2EXRA 2NQWA 5HMRA 4DNSA 3SR6B 1E8FA 4BBYA 1FO4A 5HQXA 5AE3A 1FIQB 1DIIA 5G5HB 3TSJA 2GQUA 1N60C 3NVYB 2GQTA 2VFSA 5FXDA 1ZXIC 1W1RA 3W8WA 1WVEA 2W3RA 3D2DA 2P3HA 2VAOA 5AE1A 4JB1A 4PVJA 2MBRA 3FW9A 3VTEA 3HRDC 1AHZA 3NVZB 3C0PA 1T3QC 2BVFA 2P13A 2VFRA
chains in the Genus database with same CATH superfamily

3LAEA 1F0XA 1FFUC 4O95A 1E8HA 2VFTA 1DIQA 2Y3RA 4ML8A 1FFVC 1SB3B 1W1JA 3EJBB 3DQ0A 5FXFA 3W8ZA 3NVVB 3FW8A 4ZOHB 1E0YA 2Y08A 3NRZB 4BC9A 1W1KA 2OAIA 3GSYA 2P4PA 1QLTA 1VDVA 1UXYA 5FXEA 2E3TA 3AMZA 2QKNA 1W1SA 3KJMA 3EUB3 1E8GA 2W55A 3AM9A 3ETRB 1N61C 4PWBA 3PQBA 1N5XA 1N5WC 3NVWB 4EC3A 2R8DA 5L6GA 3S1DA 2BVGA 2VFUA 2O3GA 1W1MA 2W3SA 2QPMA 5ADZA 4XLOA 1MBBA 1QLUA 5I1WA 4HG0A 4BC7A 1WVFA 1ZR6A 3LLBA 3FWAA 4PVHA 2PLSA 3RJ8A 1N62C 2Q4WA 2R2ZA 3PM9A 3S1CA 2Y3SA 1HSKA 2UUUA 1W1OA 4PVEA 3TSHA 3S1FA 1AHVA 2BVHA 3S1EA 2YVSA 4OALA 1WYGA 1JRPA 3NS1B 1RM6B 3AN1A 3JS8A 1JROA 3I99A 4MLAA 1VAOA 4PYTA 1N63C 3W8XA 5HHZA 3FW7A 2PLIA 3BW7A 2VFVA 2W54A 1W1LA 4BCAA 5D79A 2I0KA 2AXRA 3D2HA 2WDWA 3POPA 4PVKA 1MBTA 3DEDA 5I1VA 2RK5A 5G5GB 3EJEB 3TX1A 1W1QA 5K8EA 2IPIA 5L6FA 4PZFA 4JAYA 5FXPA 1I19A 3D2JA 1DZNA 2Q85A 1AHUA 4UD8A 4PWCA 1V97A 5AE2A 3B9JB 2EXRA 2NQWA 5HMRA 4DNSA 3SR6B 3EJDB 1E8FA 4BBYA 1FO4A 5HQXA 3HSUA 5AE3A 1FIQB 3RJAA 2Y4GA 1DIIA 5G5HB 3TSJA 2GQUA 1N60C 3NVYB 2GQTA 2VFSA 5FXDA 1ZXIC 1W1RA 3W8WA 1WVEA 2W3RA 3D2DA 2P3HA 2VAOA 5AE1A 4JB1A 2UUVA 4PVJA 2MBRA 3FW9A 3VTEA 3HRDC 1AHZA 3NVZB 3C0PA 1T3QC 2BVFA 5AWVA 2P13A 2VFRA
chains in the Genus database with same CATH topology

3LAEA 1F0XA 1FFUC 4O95A 1E8HA 2VFTA 1DIQA 2Y3RA 4ML8A 1FFVC 1SB3B 1W1JA 3DQ0A 5FXFA 3W8ZA 3NVVB 3FW8A 4ZOHB 1E0YA 2Y08A 3NRZB 4BC9A 1W1KA 2OAIA 3GSYA 2P4PA 1QLTA 1VDVA 1UXYA 5FXEA 2E3TA 3AMZA 2QKNA 1W1SA 3KJMA 3EUB3 1E8GA 2W55A 3AM9A 3ETRB 1N61C 4PWBA 3PQBA 1N5XA 1N5WC 2R8DA 4EC3A 3NVWB 5L6GA 3S1DA 2BVGA 2VFUA 2O3GA 1W1MA 2W3SA 2QPMA 5ADZA 4XLOA 1MBBA 1QLUA 5I1WA 4HG0A 4BC7A 1WVFA 1ZR6A 3LLBA 3FWAA 4PVHA 2PLSA 3RJ8A 1N62C 2Q4WA 2R2ZA 3PM9A 3S1CA 2Y3SA 1HSKA 2UUUA 1W1OA 4PVEA 3TSHA 3S1FA 1AHVA 2BVHA 3S1EA 2YVSA 4OALA 1WYGA 1JRPA 3NS1B 1RM6B 3AN1A 3JS8A 1JROA 3I99A 4MLAA 1VAOA 4PYTA 1N63C 3W8XA 5HHZA 3FW7A 2PLIA 3BW7A 2VFVA 2W54A 1W1LA 4BCAA 5D79A 2I0KA 2AXRA 3D2HA 2WDWA 3POPA 4PVKA 1MBTA 3DEDA 5I1VA 2RK5A 5G5GB 3TX1A 1W1QA 5K8EA 2IPIA 5L6FA 4PZFA 4JAYA 5FXPA 1I19A 3D2JA 1DZNA 2Q85A 1AHUA 4UD8A 4PWCA 1V97A 5AE2A 3B9JB 2EXRA 2NQWA 5HMRA 4DNSA 3SR6B 1E8FA 4BBYA 1FO4A 5HQXA 3HSUA 5AE3A 1FIQB 3RJAA 2Y4GA 1DIIA 5G5HB 3TSJA 2GQUA 1N60C 3NVYB 2GQTA 2VFSA 5FXDA 1ZXIC 1W1RA 3W8WA 1WVEA 2W3RA 3D2DA 2P3HA 2VAOA 5AE1A 4JB1A 2UUVA 4PVJA 2MBRA 3FW9A 3VTEA 3HRDC 1AHZA 3NVZB 3C0PA 1T3QC 2BVFA 5AWVA 2P13A 2VFRA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3LAE A;  1F0X A;  1FFU C;  4O95 A;  1E8H A;  2VFT A;  1DIQ A;  4ML8 A;  1FFV C;  1SB3 B;  1W1J A;  3DQ0 A;  5FXF A;  3W8Z A;  3NVV B;  3FW8 A;  4ZOH B;  1E0Y A;  3NRZ B;  4BC9 A;  1W1K A;  2OAI A;  3GSY A;  2P4P A;  1QLT A;  1VDV A;  1UXY A;  5FXE A;  2E3T A;  3AMZ A;  2QKN A;  1W1S A;  3KJM A;  3EUB 3;  1E8G A;  2W55 A;  3AM9 A;  3ETR B;  1N61 C;  4PWB A;  1N5X A;  1N5W C;  2R8D A;  4EC3 A;  3NVW B;  3S1D A;  2BVG A;  2VFU A;  2O3G A;  1W1M A;  2W3S A;  2QPM A;  5ADZ A;  4XLO A;  1MBB A;  1QLU A;  4HG0 A;  4BC7 A;  1WVF A;  1ZR6 A;  3LLB A;  3FWA A;  4PVH A;  2PLS A;  1N62 C;  2Q4W A;  2R2Z A;  3PM9 A;  3S1C A;  1HSK A;  1W1O A;  4PVE A;  3TSH A;  3S1F A;  1AHV A;  2BVH A;  3S1E A;  2YVS A;  4OAL A;  1WYG A;  1JRP A;  3NS1 B;  1RM6 B;  3AN1 A;  3JS8 A;  1JRO A;  3I99 A;  4MLA A;  1VAO A;  4PYT A;  1N63 C;  3W8X A;  5HHZ A;  3FW7 A;  2PLI A;  3BW7 A;  2VFV A;  2W54 A;  1W1L A;  4BCA A;  5D79 A;  2I0K A;  2AXR A;  3D2H A;  4PVK A;  1MBT A;  3DED A;  2RK5 A;  5G5G B;  3TX1 A;  1W1Q A;  4PZF A;  4JAY A;  5FXP A;  1I19 A;  3D2J A;  1DZN A;  2Q85 A;  1AHU A;  4UD8 A;  4PWC A;  1V97 A;  5AE2 A;  3B9J B;  2EXR A;  2NQW A;  5HMR A;  4DNS A;  3SR6 B;  1E8F A;  4BBY A;  1FO4 A;  5HQX A;  5AE3 A;  1FIQ B;  1DII A;  5G5H B;  3TSJ A;  2GQU A;  1N60 C;  3NVY B;  2GQT A;  2VFS A;  5FXD A;  1ZXI C;  1W1R A;  3W8W A;  1WVE A;  2W3R A;  3D2D A;  2P3H A;  2VAO A;  5AE1 A;  4JB1 A;  4PVJ A;  2MBR A;  3FW9 A;  3VTE A;  3HRD C;  1AHZ A;  3NVZ B;  3C0P A;  1T3Q C;  2BVF A;  2P13 A;  2VFR A; 
#chains in the Genus database with same CATH topology
 3LAE A;  1F0X A;  1FFU C;  4O95 A;  1E8H A;  2VFT A;  1DIQ A;  2Y3R A;  4ML8 A;  1FFV C;  1SB3 B;  1W1J A;  3EJB B;  3DQ0 A;  5FXF A;  3W8Z A;  3NVV B;  3FW8 A;  4ZOH B;  1E0Y A;  2Y08 A;  3NRZ B;  4BC9 A;  1W1K A;  2OAI A;  3GSY A;  2P4P A;  1QLT A;  1VDV A;  1UXY A;  5FXE A;  2E3T A;  3AMZ A;  2QKN A;  1W1S A;  3KJM A;  3EUB 3;  1E8G A;  2W55 A;  3AM9 A;  3ETR B;  1N61 C;  4PWB A;  3PQB A;  1N5X A;  1N5W C;  3NVW B;  4EC3 A;  2R8D A;  5L6G A;  3S1D A;  2BVG A;  2VFU A;  2O3G A;  1W1M A;  2W3S A;  2QPM A;  5ADZ A;  4XLO A;  1MBB A;  1QLU A;  5I1W A;  4HG0 A;  4BC7 A;  1WVF A;  1ZR6 A;  3LLB A;  3FWA A;  4PVH A;  2PLS A;  3RJ8 A;  1N62 C;  2Q4W A;  2R2Z A;  3PM9 A;  3S1C A;  2Y3S A;  1HSK A;  2UUU A;  1W1O A;  4PVE A;  3TSH A;  3S1F A;  1AHV A;  2BVH A;  3S1E A;  2YVS A;  4OAL A;  1WYG A;  1JRP A;  3NS1 B;  1RM6 B;  3AN1 A;  3JS8 A;  1JRO A;  3I99 A;  4MLA A;  1VAO A;  4PYT A;  1N63 C;  3W8X A;  5HHZ A;  3FW7 A;  2PLI A;  3BW7 A;  2VFV A;  2W54 A;  1W1L A;  4BCA A;  5D79 A;  2I0K A;  2AXR A;  3D2H A;  2WDW A;  3POP A;  4PVK A;  1MBT A;  3DED A;  5I1V A;  2RK5 A;  5G5G B;  3EJE B;  3TX1 A;  1W1Q A;  5K8E A;  2IPI A;  5L6F A;  4PZF A;  4JAY A;  5FXP A;  1I19 A;  3D2J A;  1DZN A;  2Q85 A;  1AHU A;  4UD8 A;  4PWC A;  1V97 A;  5AE2 A;  3B9J B;  2EXR A;  2NQW A;  5HMR A;  4DNS A;  3SR6 B;  3EJD B;  1E8F A;  4BBY A;  1FO4 A;  5HQX A;  3HSU A;  5AE3 A;  1FIQ B;  3RJA A;  2Y4G A;  1DII A;  5G5H B;  3TSJ A;  2GQU A;  1N60 C;  3NVY B;  2GQT A;  2VFS A;  5FXD A;  1ZXI C;  1W1R A;  3W8W A;  1WVE A;  2W3R A;  3D2D A;  2P3H A;  2VAO A;  5AE1 A;  4JB1 A;  2UUV A;  4PVJ A;  2MBR A;  3FW9 A;  3VTE A;  3HRD C;  1AHZ A;  3NVZ B;  3C0P A;  1T3Q C;  2BVF A;  5AWV A;  2P13 A;  2VFR A; 
#chains in the Genus database with same CATH homology
 3LAE A;  1F0X A;  1FFU C;  4O95 A;  1E8H A;  2VFT A;  1DIQ A;  2Y3R A;  4ML8 A;  1FFV C;  1SB3 B;  1W1J A;  3DQ0 A;  5FXF A;  3W8Z A;  3NVV B;  3FW8 A;  4ZOH B;  1E0Y A;  2Y08 A;  3NRZ B;  4BC9 A;  1W1K A;  2OAI A;  3GSY A;  2P4P A;  1QLT A;  1VDV A;  1UXY A;  5FXE A;  2E3T A;  3AMZ A;  2QKN A;  1W1S A;  3KJM A;  3EUB 3;  1E8G A;  2W55 A;  3AM9 A;  3ETR B;  1N61 C;  4PWB A;  3PQB A;  1N5X A;  1N5W C;  2R8D A;  4EC3 A;  3NVW B;  5L6G A;  3S1D A;  2BVG A;  2VFU A;  2O3G A;  1W1M A;  2W3S A;  2QPM A;  5ADZ A;  4XLO A;  1MBB A;  1QLU A;  5I1W A;  4HG0 A;  4BC7 A;  1WVF A;  1ZR6 A;  3LLB A;  3FWA A;  4PVH A;  2PLS A;  3RJ8 A;  1N62 C;  2Q4W A;  2R2Z A;  3PM9 A;  3S1C A;  2Y3S A;  1HSK A;  2UUU A;  1W1O A;  4PVE A;  3TSH A;  3S1F A;  1AHV A;  2BVH A;  3S1E A;  2YVS A;  4OAL A;  1WYG A;  1JRP A;  3NS1 B;  1RM6 B;  3AN1 A;  3JS8 A;  1JRO A;  3I99 A;  4MLA A;  1VAO A;  4PYT A;  1N63 C;  3W8X A;  5HHZ A;  3FW7 A;  2PLI A;  3BW7 A;  2VFV A;  2W54 A;  1W1L A;  4BCA A;  5D79 A;  2I0K A;  2AXR A;  3D2H A;  2WDW A;  3POP A;  4PVK A;  1MBT A;  3DED A;  5I1V A;  2RK5 A;  5G5G B;  3TX1 A;  1W1Q A;  5K8E A;  2IPI A;  5L6F A;  4PZF A;  4JAY A;  5FXP A;  1I19 A;  3D2J A;  1DZN A;  2Q85 A;  1AHU A;  4UD8 A;  4PWC A;  1V97 A;  5AE2 A;  3B9J B;  2EXR A;  2NQW A;  5HMR A;  4DNS A;  3SR6 B;  1E8F A;  4BBY A;  1FO4 A;  5HQX A;  3HSU A;  5AE3 A;  1FIQ B;  3RJA A;  2Y4G A;  1DII A;  5G5H B;  3TSJ A;  2GQU A;  1N60 C;  3NVY B;  2GQT A;  2VFS A;  5FXD A;  1ZXI C;  1W1R A;  3W8W A;  1WVE A;  2W3R A;  3D2D A;  2P3H A;  2VAO A;  5AE1 A;  4JB1 A;  2UUV A;  4PVJ A;  2MBR A;  3FW9 A;  3VTE A;  3HRD C;  1AHZ A;  3NVZ B;  3C0P A;  1T3Q C;  2BVF A;  5AWV A;  2P13 A;  2VFR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3S1CA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations