3S1D | Genus

Total Genus 170

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	170
sequence length	502
structure length	498
Chain Sequence	PWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Zea mays
publication title	Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site. pubmed doi rcsb
molecule keywords	Cytokinin dehydrogenase 1
total genus	170
structure length	498
sequence length	502
ec nomenclature	ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date	2011-05-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF09265	Cytokin-bind	Cytokinin dehydrogenase 1, FAD and cytokinin binding

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	3s1dA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	3s1dA02
3.40.462.10	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	FAD-linked oxidases, C-terminal domain	3s1dA03

1FIQB 1JROA 4BC9A 5AE2A 1N63C 4MLAA 3B9JB 3W8WA 1W1JA 4O95A 2BVFA 5HQXA 3HRDC 4ML8A 5ADZA 1RM6B 1WVFA 3I99A 3NVZB 2BVGA 1E0YA 3D2HA 4PVKA 2R2ZA 3ETRB 3S1FA 5HHZA 2GQTA 1DIQA 1DIIA 4PZFA 1SB3B 3D2DA 4PYTA 2AXRA 2QKNA 5G5GB 3W8ZA 1FFVC 2E3TA 5HMRA 5D79A 2NQWA 4PVEA 2YVSA 2O3GA 4JAYA 1DZNA 1AHVA 4XLOA 1AHZA 1W1SA 2W55A 2MBRA 2P3HA 4EC3A 1W1LA 2RK5A 3PM9A 3EUB3 4PVHA 3FW8A 4PWCA 2OAIA 3JS8A 5FXDA 1E8HA 2W3RA 1W1OA 3TX1A 3C0PA 2Q85A 2Q4WA 3W8XA 2VFTA 3BW7A 1ZXIC 3NRZB 1N60C 1VAOA 2VFRA 4ZOHB 3VTEA 5AE3A 3LLBA 2EXRA 1AHUA 2VFUA 2P13A 1T3QC 2W54A 4BBYA 1WVEA 3LAEA 1ZR6A 1FFUC 1F0XA 1FO4A 2R8DA 1W1KA 1WYGA 2VAOA 1JRPA 3FWAA 2VFVA 3AN1A 3DEDA 3TSJA 1QLUA 3NVYB 3FW9A 4BCAA 3GSYA 3AMZA 1W1MA 4DNSA 4JB1A 3D2JA 5AE1A 3DQ0A 3S1CA 2GQUA 4PVJA 3NVWB 3TSHA 1QLTA 2W3SA 3AM9A 3S1EA 1MBTA 5FXFA 5FXEA 2BVHA 1N5XA 3KJMA 5FXPA 2P4PA 2VFSA 2PLIA 3FW7A 1V97A 3NS1B 2QPMA 3S1DA 1VDVA 1N5WC 2I0KA 4PWBA 1I19A 1N62C 3SR6B 1W1RA 4HG0A 3NVVB 1HSKA 5G5HB 2PLSA 4OALA 4UD8A 4BC7A 1UXYA 1W1QA 1E8GA 1MBBA 1N61C 1E8FA
chains in the Genus database with same CATH superfamily

1FIQB 1JROA 4BC9A 5AE2A 1N63C 4MLAA 3B9JB 3W8WA 2Y3RA 1W1JA 4O95A 2BVFA 3HSUA 5HQXA 3HRDC 4ML8A 5ADZA 1RM6B 1WVFA 3I99A 3NVZB 2UUVA 2BVGA 1E0YA 3D2HA 4PVKA 2R2ZA 3ETRB 3S1FA 5HHZA 2GQTA 1DIQA 2Y4GA 1DIIA 3RJ8A 4PZFA 1SB3B 3D2DA 4PYTA 2AXRA 2QKNA 5G5GB 3W8ZA 1FFVC 2E3TA 5HMRA 5D79A 2NQWA 4PVEA 2YVSA 2O3GA 4JAYA 1DZNA 1AHVA 4XLOA 1AHZA 1W1SA 2W55A 2MBRA 2P3HA 3RJAA 4EC3A 1W1LA 2RK5A 3PM9A 3EUB3 4PVHA 3FW8A 2UUUA 4PWCA 3EJDB 2OAIA 3JS8A 5FXDA 1E8HA 2W3RA 2WDWA 1W1OA 2Y3SA 3TX1A 3C0PA 2Q85A 2Q4WA 3W8XA 2VFTA 3BW7A 2Y08A 3PQBA 1ZXIC 3NRZB 5I1WA 1N60C 1VAOA 2VFRA 4ZOHB 3VTEA 5AE3A 2IPIA 3LLBA 2EXRA 1AHUA 2VFUA 2P13A 5I1VA 1T3QC 5L6GA 2W54A 4BBYA 1WVEA 3LAEA 1ZR6A 1FFUC 1F0XA 1FO4A 2R8DA 1W1KA 1WYGA 2VAOA 1JRPA 3FWAA 2VFVA 3AN1A 3DEDA 3TSJA 1QLUA 3NVYB 3FW9A 4BCAA 3GSYA 3AMZA 1W1MA 4DNSA 4JB1A 3D2JA 5AE1A 3DQ0A 3EJBB 3S1CA 2GQUA 4PVJA 3NVWB 3TSHA 1QLTA 5L6FA 2W3SA 3AM9A 3S1EA 5AWVA 1MBTA 5FXFA 5FXEA 2BVHA 1N5XA 3KJMA 5FXPA 2P4PA 2VFSA 2PLIA 3FW7A 1V97A 3NS1B 5K8EA 2QPMA 3S1DA 1VDVA 1N5WC 2I0KA 4PWBA 1I19A 1N62C 3SR6B 1W1RA 3EJEB 4HG0A 3NVVB 1HSKA 5G5HB 2PLSA 4OALA 4UD8A 4BC7A 1UXYA 1W1QA 1E8GA 3POPA 1MBBA 1N61C 1E8FA
chains in the Genus database with same CATH topology

1FIQB 1JROA 4BC9A 5AE2A 1N63C 4MLAA 3B9JB 3W8WA 2Y3RA 1W1JA 4O95A 2BVFA 3HSUA 5HQXA 3HRDC 4ML8A 5ADZA 1RM6B 1WVFA 3I99A 3NVZB 2UUVA 2BVGA 1E0YA 3D2HA 4PVKA 2R2ZA 3ETRB 3S1FA 5HHZA 2GQTA 1DIQA 2Y4GA 1DIIA 3RJ8A 4PZFA 1SB3B 3D2DA 4PYTA 2AXRA 2QKNA 5G5GB 3W8ZA 1FFVC 2E3TA 5HMRA 5D79A 2NQWA 4PVEA 2YVSA 2O3GA 4JAYA 1DZNA 1AHVA 4XLOA 1AHZA 1W1SA 2W55A 2MBRA 2P3HA 3RJAA 4EC3A 1W1LA 2RK5A 3PM9A 3EUB3 4PVHA 3FW8A 2UUUA 4PWCA 2OAIA 3JS8A 5FXDA 1E8HA 2W3RA 2WDWA 1W1OA 2Y3SA 3TX1A 3C0PA 2Q85A 2Q4WA 3W8XA 2VFTA 3BW7A 2Y08A 3PQBA 1ZXIC 3NRZB 5I1WA 1N60C 1VAOA 2VFRA 4ZOHB 3VTEA 5AE3A 2IPIA 3LLBA 2EXRA 1AHUA 2VFUA 2P13A 5I1VA 1T3QC 5L6GA 2W54A 4BBYA 1WVEA 3LAEA 1ZR6A 1FFUC 1F0XA 1FO4A 2R8DA 1W1KA 1WYGA 2VAOA 1JRPA 3FWAA 2VFVA 3AN1A 3DEDA 3TSJA 1QLUA 3NVYB 3FW9A 4BCAA 3GSYA 3AMZA 1W1MA 4DNSA 4JB1A 3D2JA 5AE1A 3DQ0A 3S1CA 2GQUA 4PVJA 3NVWB 3TSHA 1QLTA 5L6FA 2W3SA 3AM9A 3S1EA 5AWVA 1MBTA 5FXFA 5FXEA 2BVHA 1N5XA 3KJMA 5FXPA 2P4PA 2VFSA 2PLIA 3FW7A 1V97A 3NS1B 5K8EA 2QPMA 3S1DA 1VDVA 1N5WC 2I0KA 4PWBA 1I19A 1N62C 3SR6B 1W1RA 4HG0A 3NVVB 1HSKA 5G5HB 2PLSA 4OALA 4UD8A 4BC7A 1UXYA 1W1QA 1E8GA 3POPA 1MBBA 1N61C 1E8FA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1FIQ B;  1JRO A;  4BC9 A;  5AE2 A;  1N63 C;  4MLA A;  3B9J B;  3W8W A;  1W1J A;  4O95 A;  2BVF A;  5HQX A;  3HRD C;  4ML8 A;  5ADZ A;  1RM6 B;  1WVF A;  3I99 A;  3NVZ B;  2BVG A;  1E0Y A;  3D2H A;  4PVK A;  2R2Z A;  3ETR B;  3S1F A;  5HHZ A;  2GQT A;  1DIQ A;  1DII A;  4PZF A;  1SB3 B;  3D2D A;  4PYT A;  2AXR A;  2QKN A;  5G5G B;  3W8Z A;  1FFV C;  2E3T A;  5HMR A;  5D79 A;  2NQW A;  4PVE A;  2YVS A;  2O3G A;  4JAY A;  1DZN A;  1AHV A;  4XLO A;  1AHZ A;  1W1S A;  2W55 A;  2MBR A;  2P3H A;  4EC3 A;  1W1L A;  2RK5 A;  3PM9 A;  3EUB 3;  4PVH A;  3FW8 A;  4PWC A;  2OAI A;  3JS8 A;  5FXD A;  1E8H A;  2W3R A;  1W1O A;  3TX1 A;  3C0P A;  2Q85 A;  2Q4W A;  3W8X A;  2VFT A;  3BW7 A;  1ZXI C;  3NRZ B;  1N60 C;  1VAO A;  2VFR A;  4ZOH B;  3VTE A;  5AE3 A;  3LLB A;  2EXR A;  1AHU A;  2VFU A;  2P13 A;  1T3Q C;  2W54 A;  4BBY A;  1WVE A;  3LAE A;  1ZR6 A;  1FFU C;  1F0X A;  1FO4 A;  2R8D A;  1W1K A;  1WYG A;  2VAO A;  1JRP A;  3FWA A;  2VFV A;  3AN1 A;  3DED A;  3TSJ A;  1QLU A;  3NVY B;  3FW9 A;  4BCA A;  3GSY A;  3AMZ A;  1W1M A;  4DNS A;  4JB1 A;  3D2J A;  5AE1 A;  3DQ0 A;  3S1C A;  2GQU A;  4PVJ A;  3NVW B;  3TSH A;  1QLT A;  2W3S A;  3AM9 A;  3S1E A;  1MBT A;  5FXF A;  5FXE A;  2BVH A;  1N5X A;  3KJM A;  5FXP A;  2P4P A;  2VFS A;  2PLI A;  3FW7 A;  1V97 A;  3NS1 B;  2QPM A;  3S1D A;  1VDV A;  1N5W C;  2I0K A;  4PWB A;  1I19 A;  1N62 C;  3SR6 B;  1W1R A;  4HG0 A;  3NVV B;  1HSK A;  5G5H B;  2PLS A;  4OAL A;  4UD8 A;  4BC7 A;  1UXY A;  1W1Q A;  1E8G A;  1MBB A;  1N61 C;  1E8F A; 
#chains in the Genus database with same CATH topology
 1FIQ B;  1JRO A;  4BC9 A;  5AE2 A;  1N63 C;  4MLA A;  3B9J B;  3W8W A;  2Y3R A;  1W1J A;  4O95 A;  2BVF A;  3HSU A;  5HQX A;  3HRD C;  4ML8 A;  5ADZ A;  1RM6 B;  1WVF A;  3I99 A;  3NVZ B;  2UUV A;  2BVG A;  1E0Y A;  3D2H A;  4PVK A;  2R2Z A;  3ETR B;  3S1F A;  5HHZ A;  2GQT A;  1DIQ A;  2Y4G A;  1DII A;  3RJ8 A;  4PZF A;  1SB3 B;  3D2D A;  4PYT A;  2AXR A;  2QKN A;  5G5G B;  3W8Z A;  1FFV C;  2E3T A;  5HMR A;  5D79 A;  2NQW A;  4PVE A;  2YVS A;  2O3G A;  4JAY A;  1DZN A;  1AHV A;  4XLO A;  1AHZ A;  1W1S A;  2W55 A;  2MBR A;  2P3H A;  3RJA A;  4EC3 A;  1W1L A;  2RK5 A;  3PM9 A;  3EUB 3;  4PVH A;  3FW8 A;  2UUU A;  4PWC A;  3EJD B;  2OAI A;  3JS8 A;  5FXD A;  1E8H A;  2W3R A;  2WDW A;  1W1O A;  2Y3S A;  3TX1 A;  3C0P A;  2Q85 A;  2Q4W A;  3W8X A;  2VFT A;  3BW7 A;  2Y08 A;  3PQB A;  1ZXI C;  3NRZ B;  5I1W A;  1N60 C;  1VAO A;  2VFR A;  4ZOH B;  3VTE A;  5AE3 A;  2IPI A;  3LLB A;  2EXR A;  1AHU A;  2VFU A;  2P13 A;  5I1V A;  1T3Q C;  5L6G A;  2W54 A;  4BBY A;  1WVE A;  3LAE A;  1ZR6 A;  1FFU C;  1F0X A;  1FO4 A;  2R8D A;  1W1K A;  1WYG A;  2VAO A;  1JRP A;  3FWA A;  2VFV A;  3AN1 A;  3DED A;  3TSJ A;  1QLU A;  3NVY B;  3FW9 A;  4BCA A;  3GSY A;  3AMZ A;  1W1M A;  4DNS A;  4JB1 A;  3D2J A;  5AE1 A;  3DQ0 A;  3EJB B;  3S1C A;  2GQU A;  4PVJ A;  3NVW B;  3TSH A;  1QLT A;  5L6F A;  2W3S A;  3AM9 A;  3S1E A;  5AWV A;  1MBT A;  5FXF A;  5FXE A;  2BVH A;  1N5X A;  3KJM A;  5FXP A;  2P4P A;  2VFS A;  2PLI A;  3FW7 A;  1V97 A;  3NS1 B;  5K8E A;  2QPM A;  3S1D A;  1VDV A;  1N5W C;  2I0K A;  4PWB A;  1I19 A;  1N62 C;  3SR6 B;  1W1R A;  3EJE B;  4HG0 A;  3NVV B;  1HSK A;  5G5H B;  2PLS A;  4OAL A;  4UD8 A;  4BC7 A;  1UXY A;  1W1Q A;  1E8G A;  3POP A;  1MBB A;  1N61 C;  1E8F A; 
#chains in the Genus database with same CATH homology
 1FIQ B;  1JRO A;  4BC9 A;  5AE2 A;  1N63 C;  4MLA A;  3B9J B;  3W8W A;  2Y3R A;  1W1J A;  4O95 A;  2BVF A;  3HSU A;  5HQX A;  3HRD C;  4ML8 A;  5ADZ A;  1RM6 B;  1WVF A;  3I99 A;  3NVZ B;  2UUV A;  2BVG A;  1E0Y A;  3D2H A;  4PVK A;  2R2Z A;  3ETR B;  3S1F A;  5HHZ A;  2GQT A;  1DIQ A;  2Y4G A;  1DII A;  3RJ8 A;  4PZF A;  1SB3 B;  3D2D A;  4PYT A;  2AXR A;  2QKN A;  5G5G B;  3W8Z A;  1FFV C;  2E3T A;  5HMR A;  5D79 A;  2NQW A;  4PVE A;  2YVS A;  2O3G A;  4JAY A;  1DZN A;  1AHV A;  4XLO A;  1AHZ A;  1W1S A;  2W55 A;  2MBR A;  2P3H A;  3RJA A;  4EC3 A;  1W1L A;  2RK5 A;  3PM9 A;  3EUB 3;  4PVH A;  3FW8 A;  2UUU A;  4PWC A;  2OAI A;  3JS8 A;  5FXD A;  1E8H A;  2W3R A;  2WDW A;  1W1O A;  2Y3S A;  3TX1 A;  3C0P A;  2Q85 A;  2Q4W A;  3W8X A;  2VFT A;  3BW7 A;  2Y08 A;  3PQB A;  1ZXI C;  3NRZ B;  5I1W A;  1N60 C;  1VAO A;  2VFR A;  4ZOH B;  3VTE A;  5AE3 A;  2IPI A;  3LLB A;  2EXR A;  1AHU A;  2VFU A;  2P13 A;  5I1V A;  1T3Q C;  5L6G A;  2W54 A;  4BBY A;  1WVE A;  3LAE A;  1ZR6 A;  1FFU C;  1F0X A;  1FO4 A;  2R8D A;  1W1K A;  1WYG A;  2VAO A;  1JRP A;  3FWA A;  2VFV A;  3AN1 A;  3DED A;  3TSJ A;  1QLU A;  3NVY B;  3FW9 A;  4BCA A;  3GSY A;  3AMZ A;  1W1M A;  4DNS A;  4JB1 A;  3D2J A;  5AE1 A;  3DQ0 A;  3S1C A;  2GQU A;  4PVJ A;  3NVW B;  3TSH A;  1QLT A;  5L6F A;  2W3S A;  3AM9 A;  3S1E A;  5AWV A;  1MBT A;  5FXF A;  5FXE A;  2BVH A;  1N5X A;  3KJM A;  5FXP A;  2P4P A;  2VFS A;  2PLI A;  3FW7 A;  1V97 A;  3NS1 B;  5K8E A;  2QPM A;  3S1D A;  1VDV A;  1N5W C;  2I0K A;  4PWB A;  1I19 A;  1N62 C;  3SR6 B;  1W1R A;  4HG0 A;  3NVV B;  1HSK A;  5G5H B;  2PLS A;  4OAL A;  4UD8 A;  4BC7 A;  1UXY A;  1W1Q A;  1E8G A;  3POP A;  1MBB A;  1N61 C;  1E8F A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3S1DA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations