The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
82
|
sequence length |
298
|
structure length |
295
|
Chain Sequence |
MNNLQTKFPHIAIKLNEPLSKYTYTKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDGGIRGVILHLDLLQTIERNNTQIVAMSGAKLIDTAKFALNESLSGLEFACGIPGSIGGALHMNAGAYGGEISDVLEAATVLTQTGELKKLKRSELKYRSTIAEKNYIVLDATFSLALEEKNLIQAKMDELTAAREAKQPLEYPSCGSVFKRPPGHFAGKLIQDSGLQGHIIGGAQVSLKHAGFIVNIGGATATDYMNLIAYVQQTVREKFDVELETEVKIIGEDK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-ray crystal structure of Listeria monocytogenes EGD-e UDP-N-acetylenolpyruvylglucosamine reductase (MurB).
rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Listeria monocytogenes
|
| molecule keywords |
UDP-N-acetylenolpyruvoylglucosamine reductase
|
| total genus |
82
|
| structure length |
295
|
| sequence length |
298
|
| ec nomenclature |
ec
1.3.1.98: UDP-N-acetylmuramate dehydrogenase. |
| pdb deposition date | 2011-09-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01565 | FAD_binding_4 | FAD binding domain |
| A | PF02873 | MurB_C | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | ||
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | ||
| Alpha Beta | Alpha-Beta Complex | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain |
#chains in the Genus database with same CATH superfamily 2VFV A; 1N63 C; 5D79 A; 2PLI A; 4PVJ A; 2P3H A; 2VFS A; 2NQW A; 3FW8 A; 4BC9 A; 5HQX A; 1E8G A; 2P13 A; 3HRD C; 3I99 A; 5HHZ A; 1DII A; 1AHV A; 1FFU C; 1DIQ A; 1AHU A; 1ZR6 A; 2W3R A; 4PVE A; 1JRP A; 1FIQ B; 3NVZ B; 3NS1 B; 2VFU A; 2I0K A; 5FXF A; 2VAO A; 4PWC A; 3AMZ A; 1W1R A; 2QKN A; 2W55 A; 4JAY A; 3LAE A; 1V97 A; 1W1Q A; 1FO4 A; 2P4P A; 2YVS A; 5G5G B; 1N60 C; 4BBY A; 2AXR A; 1E8F A; 4UD8 A; 4DNS A; 3DQ0 A; 4PWB A; 3FW9 A; 1W1M A; 5ADZ A; 2W3S A; 2E3T A; 3BW7 A; 1N5W C; 2MBR A; 1RM6 B; 3TSJ A; 3GSY A; 3DED A; 1N62 C; 4BC7 A; 3S1D A; 1VAO A; 3TSH A; 3W8W A; 2EXR A; 5G5H B; 3ETR B; 3AM9 A; 4MLA A; 3AN1 A; 2VFR A; 3C0P A; 5HMR A; 4JB1 A; 4PVH A; 4XLO A; 1W1O A; 5FXD A; 1WYG A; 3JS8 A; 5AE2 A; 1VDV A; 2W54 A; 2Q4W A; 2PLS A; 3W8Z A; 3NVV B; 1SB3 B; 3FW7 A; 1W1J A; 1WVE A; 1DZN A; 2Q85 A; 1W1K A; 2O3G A; 4ZOH B; 1MBT A; 1AHZ A; 3D2J A; 3TX1 A; 1HSK A; 3EUB 3; 5AE3 A; 1ZXI C; 3FWA A; 1W1S A; 1T3Q C; 3NVY B; 2GQU A; 3B9J B; 3NRZ B; 4PVK A; 2BVG A; 3S1F A; 4EC3 A; 2GQT A; 1E0Y A; 2QPM A; 5FXP A; 3SR6 B; 1F0X A; 2RK5 A; 3LLB A; 1UXY A; 1E8H A; 3PM9 A; 4HG0 A; 4BCA A; 5AE1 A; 4O95 A; 2R8D A; 3D2H A; 1N61 C; 1QLT A; 2VFT A; 4PYT A; 3VTE A; 3W8X A; 1I19 A; 3S1C A; 1QLU A; 3NVW B; 2OAI A; 3S1E A; 5FXE A; 1WVF A; 4OAL A; 2R2Z A; 4PZF A; 1W1L A; 4ML8 A; 2BVF A; 1N5X A; 3D2D A; 1FFV C; 1JRO A; 1MBB A; 2BVH A; 3KJM A; #chains in the Genus database with same CATH topology 2VFV A; 1N63 C; 5D79 A; 2PLI A; 4PVJ A; 2P3H A; 2VFS A; 2NQW A; 3FW8 A; 4BC9 A; 5HQX A; 1E8G A; 2P13 A; 3HRD C; 3I99 A; 5HHZ A; 1DII A; 1AHV A; 1FFU C; 1DIQ A; 1AHU A; 1ZR6 A; 2W3R A; 4PVE A; 1JRP A; 1FIQ B; 3NVZ B; 3NS1 B; 2VFU A; 2I0K A; 5FXF A; 2VAO A; 4PWC A; 3AMZ A; 1W1R A; 2QKN A; 2W55 A; 4JAY A; 3LAE A; 1V97 A; 1W1Q A; 1FO4 A; 2P4P A; 2Y08 A; 2YVS A; 5G5G B; 1N60 C; 4BBY A; 2AXR A; 2WDW A; 1E8F A; 4UD8 A; 4DNS A; 3DQ0 A; 4PWB A; 3FW9 A; 1W1M A; 5ADZ A; 2W3S A; 2E3T A; 5AWV A; 3BW7 A; 1N5W C; 5I1W A; 2MBR A; 1RM6 B; 3TSJ A; 3GSY A; 2UUU A; 3DED A; 1N62 C; 4BC7 A; 3S1D A; 2Y3S A; 1VAO A; 3TSH A; 3W8W A; 2EXR A; 5G5H B; 3ETR B; 3AM9 A; 4MLA A; 3AN1 A; 2VFR A; 3C0P A; 5HMR A; 4JB1 A; 4PVH A; 3RJ8 A; 4XLO A; 1W1O A; 5FXD A; 1WYG A; 3JS8 A; 5AE2 A; 3POP A; 1VDV A; 3EJD B; 2W54 A; 2Q4W A; 2PLS A; 3PQB A; 3NVV B; 3W8Z A; 1SB3 B; 2IPI A; 3FW7 A; 1W1J A; 1WVE A; 1DZN A; 2Q85 A; 1W1K A; 2O3G A; 4ZOH B; 5I1V A; 1MBT A; 1AHZ A; 2Y3R A; 3D2J A; 3TX1 A; 1HSK A; 3EUB 3; 2UUV A; 5AE3 A; 1ZXI C; 3FWA A; 1W1S A; 1T3Q C; 3NVY B; 2GQU A; 3B9J B; 3NRZ B; 4PVK A; 2BVG A; 3S1F A; 4EC3 A; 3RJA A; 2GQT A; 1E0Y A; 2QPM A; 5FXP A; 3SR6 B; 1F0X A; 2RK5 A; 3LLB A; 1UXY A; 3EJB B; 1E8H A; 3HSU A; 5K8E A; 3PM9 A; 4HG0 A; 3EJE B; 4BCA A; 5AE1 A; 4O95 A; 2R8D A; 3D2H A; 2Y4G A; 1N61 C; 1QLT A; 2VFT A; 4PYT A; 3VTE A; 5L6G A; 3W8X A; 1I19 A; 3S1C A; 1QLU A; 3NVW B; 2OAI A; 3S1E A; 5FXE A; 1WVF A; 4OAL A; 2R2Z A; 5L6F A; 4PZF A; 1W1L A; 4ML8 A; 2BVF A; 1N5X A; 3D2D A; 1FFV C; 1JRO A; 1MBB A; 2BVH A; 3KJM A; #chains in the Genus database with same CATH homology 2VFV A; 1N63 C; 5D79 A; 2PLI A; 4PVJ A; 2P3H A; 2VFS A; 2NQW A; 3FW8 A; 4BC9 A; 5HQX A; 1E8G A; 2P13 A; 3HRD C; 3I99 A; 5HHZ A; 1DII A; 1AHV A; 1FFU C; 1DIQ A; 1AHU A; 1ZR6 A; 2W3R A; 4PVE A; 1JRP A; 1FIQ B; 3NVZ B; 3NS1 B; 2VFU A; 2I0K A; 5FXF A; 2VAO A; 4PWC A; 3AMZ A; 1W1R A; 2QKN A; 2W55 A; 4JAY A; 3LAE A; 1V97 A; 1W1Q A; 1FO4 A; 2P4P A; 2Y08 A; 2YVS A; 5G5G B; 1N60 C; 4BBY A; 2AXR A; 2WDW A; 1E8F A; 4UD8 A; 4DNS A; 3DQ0 A; 4PWB A; 3FW9 A; 1W1M A; 5ADZ A; 2W3S A; 2E3T A; 5AWV A; 3BW7 A; 1N5W C; 5I1W A; 2MBR A; 1RM6 B; 3TSJ A; 3GSY A; 2UUU A; 3DED A; 1N62 C; 4BC7 A; 3S1D A; 2Y3S A; 1VAO A; 3TSH A; 3W8W A; 2EXR A; 5G5H B; 3ETR B; 3AM9 A; 4MLA A; 3AN1 A; 2VFR A; 3C0P A; 5HMR A; 4JB1 A; 4PVH A; 3RJ8 A; 4XLO A; 1W1O A; 5FXD A; 1WYG A; 3JS8 A; 5AE2 A; 3POP A; 1VDV A; 2W54 A; 2Q4W A; 2PLS A; 3PQB A; 3W8Z A; 3NVV B; 1SB3 B; 2IPI A; 3FW7 A; 1W1J A; 1WVE A; 1DZN A; 2Q85 A; 1W1K A; 2O3G A; 4ZOH B; 5I1V A; 1MBT A; 1AHZ A; 2Y3R A; 3D2J A; 3TX1 A; 1HSK A; 3EUB 3; 2UUV A; 5AE3 A; 1ZXI C; 3FWA A; 1W1S A; 1T3Q C; 3NVY B; 2GQU A; 3B9J B; 3NRZ B; 4PVK A; 2BVG A; 3S1F A; 4EC3 A; 3RJA A; 2GQT A; 1E0Y A; 2QPM A; 5FXP A; 3SR6 B; 1F0X A; 2RK5 A; 3LLB A; 1UXY A; 1E8H A; 3HSU A; 5K8E A; 3PM9 A; 4HG0 A; 4BCA A; 5AE1 A; 4O95 A; 2R8D A; 3D2H A; 2Y4G A; 1N61 C; 1QLT A; 2VFT A; 4PYT A; 3VTE A; 5L6G A; 3W8X A; 1I19 A; 3S1C A; 1QLU A; 3NVW B; 2OAI A; 3S1E A; 5FXE A; 1WVF A; 4OAL A; 2R2Z A; 5L6F A; 4PZF A; 1W1L A; 4ML8 A; 2BVF A; 1N5X A; 3D2D A; 1FFV C; 1JRO A; 1MBB A; 2BVH A; 3KJM A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
