3W8Z | Genus

Total Genus 139

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	139
sequence length	460
structure length	460
Chain Sequence	QFPQLDPATLAAFSAAFRGELIWPSDADYDEARRIWNGTIDRRPALIARCTSTPDVVAAVSFARKSGLLVAVRGGGHSMAGHSVCDGGIVIDLSLMNSIKVSRRLRRARAQGGCLLGAFDTATQAHMLATPAGVVSHTGLGGLVLGGGFGWLSRKYGLSIDNLTSVEIVTADGGVLTASDTENPDLFWAVRGGGGNFGVVTAFEFDLHRVGPVRFASTYYSLDEGPQVIRAWRDHMATAPDELTWALYLRLAPPLPELPADMHGKPVICAMSCWIGDPHEGERQLESILHAGKPHGLTKATLPYRALQAYSFPGAVVPDRIYTKSGYLNELSDEATDTVLEHAADIASPFTQLELLYLGGAVARVPDDATAYPNRQSPFVTNLAAAWMDPTEDARHTAWAREGYRALAGHLSGGYVNFMNPGEADRTREAYGAAKFERLQGVKAKYDPTNLFRLNQNIPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d0364f1ec7103c977470713/pdb.gz

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Streptomyces maritimus
publication title	Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement. pubmed doi rcsb
molecule keywords	Putative FAD-dependent oxygenase EncM
total genus	139
structure length	460
sequence length	460
chains with identical sequence	B
ec nomenclature	ec 1.13.12.-:
pdb deposition date	2013-03-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF08031	BBE	Berberine and berberine like

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	3w8zA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	3w8zA02
3.40.462.20	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	Vanillyl-alcohol Oxidase; Chain A, domain 3	3w8zA03

5FXFA 2P13A 5AE1A 2W3SA 5AE2A 1AHZA 5G5GB 3AN1A 3RJAA 2VAOA 4OALA 2O3GA 3LLBA 3HSUA 3POPA 2VFVA 1F0XA 1W1KA 2QPMA 5FXPA 1N61C 3I99A 3AM9A 3NS1B 1ZR6A 5K8EA 4PVEA 4PYTA 2R8DA 1N5WC 5ADZA 1FFUC 3W8WA 3D2JA 1W1SA 2Y4GA 5I1WA 3TX1A 3FW9A 4PVKA 5L6GA 2VFRA 3DQ0A 1N63C 2BVHA 2PLSA 1UXYA 2Y3RA 2Y3SA 1RM6B 3FW7A 2Y08A 5AE3A 1W1JA 3NVYB 3D2HA 5L6FA 3S1DA 1T3QC 3DEDA 5HHZA 1E0YA 1QLUA 3JS8A 3LAEA 1W1LA 3S1CA 2W3RA 1E8GA 1V97A 4PWBA 4BC7A 1JRPA 1VDVA 4PWCA 3HRDC 3PM9A 3SR6B 1FO4A 4ZOHB 5AWVA 2VFSA 2BVGA 2W55A 4HG0A 2OAIA 4PZFA 3W8XA 1DZNA 2RK5A 3TSJA 1AHVA 3W8ZA 2W54A 4PVHA 4BBYA 4XLOA 3S1EA 1FFVC 5I1VA 4PVJA 1AHUA 2YVSA 1N60C 1I19A 1DIIA 2Q85A 3FW8A 2EXRA 2MBRA 1WVFA 5G5HB 1WVEA 4DNSA 1WYGA 1N5XA 3C0PA 1W1RA 2AXRA 2P4PA 2IPIA 5FXEA 4O95A 1DIQA 2VFTA 3NVWB 4BCAA 3NVZB 1VAOA 2PLIA 1HSKA 1FIQB 5FXDA 4UD8A 2Q4WA 4JAYA 1MBBA 3S1FA 3D2DA 3NRZB 3KJMA 1JROA 3RJ8A 2I0KA 5HQXA 2VFUA 1W1OA 4EC3A 5D79A 3AMZA 3EUB3 1E8HA 2NQWA 2E3TA 4MLAA 4ML8A 3BW7A 4JB1A 2BVFA 5HMRA 1QLTA 1N62C 2P3HA 4BC9A 1SB3B 2WDWA 2R2ZA 3TSHA 1E8FA 3NVVB 2QKNA 1ZXIC 3VTEA 3ETRB 1W1MA 3FWAA 3B9JB 2GQUA 1W1QA 3GSYA 3PQBA 1MBTA 2GQTA
chains in the Genus database with same CATH superfamily

5FXFA 2P13A 5AE1A 2W3SA 5AE2A 1AHZA 5G5GB 3AN1A 3RJAA 2VAOA 4OALA 2O3GA 3HSUA 3LLBA 3POPA 2VFVA 1F0XA 1W1KA 2QPMA 5FXPA 1N61C 3I99A 3AM9A 3NS1B 1ZR6A 5K8EA 4PVEA 4PYTA 2R8DA 1N5WC 5ADZA 1FFUC 3W8WA 3D2JA 1W1SA 2Y4GA 5I1WA 3TX1A 3FW9A 4PVKA 5L6GA 2VFRA 3DQ0A 1N63C 2BVHA 2PLSA 1UXYA 2Y3RA 2Y3SA 1RM6B 3FW7A 2Y08A 5AE3A 1W1JA 3NVYB 3D2HA 5L6FA 3S1DA 1T3QC 3DEDA 5HHZA 1E0YA 1QLUA 3JS8A 3LAEA 1W1LA 3S1CA 2W3RA 1E8GA 1V97A 4PWBA 4BC7A 1JRPA 1VDVA 4PWCA 3HRDC 3PM9A 3SR6B 1FO4A 4ZOHB 5AWVA 2VFSA 2BVGA 2W55A 4HG0A 2OAIA 4PZFA 3W8XA 1DZNA 2RK5A 3TSJA 1AHVA 2UUUA 3W8ZA 2W54A 4PVHA 4BBYA 4XLOA 3S1EA 1FFVC 5I1VA 4PVJA 1AHUA 2YVSA 1N60C 1I19A 1DIIA 2Q85A 3FW8A 2EXRA 2MBRA 1WVFA 5G5HB 1WVEA 4DNSA 1WYGA 1N5XA 3C0PA 1W1RA 2AXRA 2P4PA 2IPIA 5FXEA 3EJDB 4O95A 1DIQA 2VFTA 3NVWB 4BCAA 3NVZB 1VAOA 2PLIA 3EJBB 1HSKA 1FIQB 3EJEB 5FXDA 4UD8A 2Q4WA 4JAYA 1MBBA 3S1FA 3D2DA 3NRZB 3KJMA 1JROA 3RJ8A 2I0KA 5HQXA 2VFUA 1W1OA 4EC3A 5D79A 3AMZA 3EUB3 1E8HA 2NQWA 2E3TA 4MLAA 4ML8A 3BW7A 4JB1A 2BVFA 5HMRA 1QLTA 1N62C 2P3HA 4BC9A 1SB3B 2WDWA 2R2ZA 3TSHA 1E8FA 3NVVB 2QKNA 1ZXIC 3VTEA 3ETRB 1W1MA 3FWAA 3B9JB 2GQUA 1W1QA 3GSYA 2UUVA 3PQBA 1MBTA 2GQTA
chains in the Genus database with same CATH topology

5FXFA 2P13A 5AE1A 2W3SA 5AE2A 1AHZA 5G5GB 3AN1A 3RJAA 2VAOA 4OALA 2O3GA 3HSUA 3LLBA 3POPA 2VFVA 1F0XA 1W1KA 2QPMA 5FXPA 1N61C 3I99A 3AM9A 3NS1B 1ZR6A 5K8EA 4PVEA 4PYTA 2R8DA 1N5WC 5ADZA 1FFUC 3W8WA 3D2JA 1W1SA 2Y4GA 5I1WA 3TX1A 3FW9A 4PVKA 5L6GA 2VFRA 3DQ0A 1N63C 2BVHA 2PLSA 1UXYA 2Y3RA 2Y3SA 1RM6B 3FW7A 2Y08A 5AE3A 1W1JA 3NVYB 3D2HA 5L6FA 3S1DA 1T3QC 3DEDA 5HHZA 1E0YA 1QLUA 3JS8A 3LAEA 1W1LA 3S1CA 2W3RA 1E8GA 1V97A 4PWBA 4BC7A 1JRPA 1VDVA 4PWCA 3HRDC 3PM9A 3SR6B 1FO4A 4ZOHB 5AWVA 2VFSA 2BVGA 2W55A 4HG0A 2OAIA 4PZFA 3W8XA 1DZNA 2RK5A 3TSJA 1AHVA 2UUUA 3W8ZA 2W54A 4PVHA 4BBYA 4XLOA 3S1EA 1FFVC 5I1VA 4PVJA 1AHUA 2YVSA 1N60C 1I19A 1DIIA 2Q85A 3FW8A 2EXRA 2MBRA 1WVFA 5G5HB 1WVEA 4DNSA 1WYGA 1N5XA 3C0PA 1W1RA 2AXRA 2P4PA 2IPIA 5FXEA 4O95A 1DIQA 2VFTA 3NVWB 4BCAA 3NVZB 1VAOA 2PLIA 1HSKA 1FIQB 5FXDA 4UD8A 2Q4WA 4JAYA 1MBBA 3S1FA 3D2DA 3NRZB 3KJMA 1JROA 3RJ8A 2I0KA 5HQXA 2VFUA 1W1OA 4EC3A 5D79A 3AMZA 3EUB3 1E8HA 2NQWA 2E3TA 4MLAA 4ML8A 3BW7A 4JB1A 2BVFA 5HMRA 1QLTA 1N62C 2P3HA 4BC9A 1SB3B 2WDWA 2R2ZA 3TSHA 1E8FA 3NVVB 2QKNA 1ZXIC 3VTEA 3ETRB 1W1MA 3FWAA 3B9JB 2GQUA 1W1QA 3GSYA 2UUVA 3PQBA 1MBTA 2GQTA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5FXF A;  2P13 A;  5AE1 A;  2W3S A;  5AE2 A;  1AHZ A;  5G5G B;  3AN1 A;  3RJA A;  2VAO A;  4OAL A;  2O3G A;  3LLB A;  3HSU A;  3POP A;  2VFV A;  1F0X A;  1W1K A;  2QPM A;  5FXP A;  1N61 C;  3I99 A;  3AM9 A;  3NS1 B;  1ZR6 A;  5K8E A;  4PVE A;  4PYT A;  2R8D A;  1N5W C;  5ADZ A;  1FFU C;  3W8W A;  3D2J A;  1W1S A;  2Y4G A;  5I1W A;  3TX1 A;  3FW9 A;  4PVK A;  5L6G A;  2VFR A;  3DQ0 A;  1N63 C;  2BVH A;  2PLS A;  1UXY A;  2Y3R A;  2Y3S A;  1RM6 B;  3FW7 A;  2Y08 A;  5AE3 A;  1W1J A;  3NVY B;  3D2H A;  5L6F A;  3S1D A;  1T3Q C;  3DED A;  5HHZ A;  1E0Y A;  1QLU A;  3JS8 A;  3LAE A;  1W1L A;  3S1C A;  2W3R A;  1E8G A;  1V97 A;  4PWB A;  4BC7 A;  1JRP A;  1VDV A;  4PWC A;  3HRD C;  3PM9 A;  3SR6 B;  1FO4 A;  4ZOH B;  5AWV A;  2VFS A;  2BVG A;  2W55 A;  4HG0 A;  2OAI A;  4PZF A;  3W8X A;  1DZN A;  2RK5 A;  3TSJ A;  1AHV A;  3W8Z A;  2W54 A;  4PVH A;  4BBY A;  4XLO A;  3S1E A;  1FFV C;  5I1V A;  4PVJ A;  1AHU A;  2YVS A;  1N60 C;  1I19 A;  1DII A;  2Q85 A;  3FW8 A;  2EXR A;  2MBR A;  1WVF A;  5G5H B;  1WVE A;  4DNS A;  1WYG A;  1N5X A;  3C0P A;  1W1R A;  2AXR A;  2P4P A;  2IPI A;  5FXE A;  4O95 A;  1DIQ A;  2VFT A;  3NVW B;  4BCA A;  3NVZ B;  1VAO A;  2PLI A;  1HSK A;  1FIQ B;  5FXD A;  4UD8 A;  2Q4W A;  4JAY A;  1MBB A;  3S1F A;  3D2D A;  3NRZ B;  3KJM A;  1JRO A;  3RJ8 A;  2I0K A;  5HQX A;  2VFU A;  1W1O A;  4EC3 A;  5D79 A;  3AMZ A;  3EUB 3;  1E8H A;  2NQW A;  2E3T A;  4MLA A;  4ML8 A;  3BW7 A;  4JB1 A;  2BVF A;  5HMR A;  1QLT A;  1N62 C;  2P3H A;  4BC9 A;  1SB3 B;  2WDW A;  2R2Z A;  3TSH A;  1E8F A;  3NVV B;  2QKN A;  1ZXI C;  3VTE A;  3ETR B;  1W1M A;  3FWA A;  3B9J B;  2GQU A;  1W1Q A;  3GSY A;  3PQB A;  1MBT A;  2GQT A; 
#chains in the Genus database with same CATH topology
 5FXF A;  2P13 A;  5AE1 A;  2W3S A;  5AE2 A;  1AHZ A;  5G5G B;  3AN1 A;  3RJA A;  2VAO A;  4OAL A;  2O3G A;  3HSU A;  3LLB A;  3POP A;  2VFV A;  1F0X A;  1W1K A;  2QPM A;  5FXP A;  1N61 C;  3I99 A;  3AM9 A;  3NS1 B;  1ZR6 A;  5K8E A;  4PVE A;  4PYT A;  2R8D A;  1N5W C;  5ADZ A;  1FFU C;  3W8W A;  3D2J A;  1W1S A;  2Y4G A;  5I1W A;  3TX1 A;  3FW9 A;  4PVK A;  5L6G A;  2VFR A;  3DQ0 A;  1N63 C;  2BVH A;  2PLS A;  1UXY A;  2Y3R A;  2Y3S A;  1RM6 B;  3FW7 A;  2Y08 A;  5AE3 A;  1W1J A;  3NVY B;  3D2H A;  5L6F A;  3S1D A;  1T3Q C;  3DED A;  5HHZ A;  1E0Y A;  1QLU A;  3JS8 A;  3LAE A;  1W1L A;  3S1C A;  2W3R A;  1E8G A;  1V97 A;  4PWB A;  4BC7 A;  1JRP A;  1VDV A;  4PWC A;  3HRD C;  3PM9 A;  3SR6 B;  1FO4 A;  4ZOH B;  5AWV A;  2VFS A;  2BVG A;  2W55 A;  4HG0 A;  2OAI A;  4PZF A;  3W8X A;  1DZN A;  2RK5 A;  3TSJ A;  1AHV A;  2UUU A;  3W8Z A;  2W54 A;  4PVH A;  4BBY A;  4XLO A;  3S1E A;  1FFV C;  5I1V A;  4PVJ A;  1AHU A;  2YVS A;  1N60 C;  1I19 A;  1DII A;  2Q85 A;  3FW8 A;  2EXR A;  2MBR A;  1WVF A;  5G5H B;  1WVE A;  4DNS A;  1WYG A;  1N5X A;  3C0P A;  1W1R A;  2AXR A;  2P4P A;  2IPI A;  5FXE A;  3EJD B;  4O95 A;  1DIQ A;  2VFT A;  3NVW B;  4BCA A;  3NVZ B;  1VAO A;  2PLI A;  3EJB B;  1HSK A;  1FIQ B;  3EJE B;  5FXD A;  4UD8 A;  2Q4W A;  4JAY A;  1MBB A;  3S1F A;  3D2D A;  3NRZ B;  3KJM A;  1JRO A;  3RJ8 A;  2I0K A;  5HQX A;  2VFU A;  1W1O A;  4EC3 A;  5D79 A;  3AMZ A;  3EUB 3;  1E8H A;  2NQW A;  2E3T A;  4MLA A;  4ML8 A;  3BW7 A;  4JB1 A;  2BVF A;  5HMR A;  1QLT A;  1N62 C;  2P3H A;  4BC9 A;  1SB3 B;  2WDW A;  2R2Z A;  3TSH A;  1E8F A;  3NVV B;  2QKN A;  1ZXI C;  3VTE A;  3ETR B;  1W1M A;  3FWA A;  3B9J B;  2GQU A;  1W1Q A;  3GSY A;  2UUV A;  3PQB A;  1MBT A;  2GQT A; 
#chains in the Genus database with same CATH homology
 5FXF A;  2P13 A;  5AE1 A;  2W3S A;  5AE2 A;  1AHZ A;  5G5G B;  3AN1 A;  3RJA A;  2VAO A;  4OAL A;  2O3G A;  3HSU A;  3LLB A;  3POP A;  2VFV A;  1F0X A;  1W1K A;  2QPM A;  5FXP A;  1N61 C;  3I99 A;  3AM9 A;  3NS1 B;  1ZR6 A;  5K8E A;  4PVE A;  4PYT A;  2R8D A;  1N5W C;  5ADZ A;  1FFU C;  3W8W A;  3D2J A;  1W1S A;  2Y4G A;  5I1W A;  3TX1 A;  3FW9 A;  4PVK A;  5L6G A;  2VFR A;  3DQ0 A;  1N63 C;  2BVH A;  2PLS A;  1UXY A;  2Y3R A;  2Y3S A;  1RM6 B;  3FW7 A;  2Y08 A;  5AE3 A;  1W1J A;  3NVY B;  3D2H A;  5L6F A;  3S1D A;  1T3Q C;  3DED A;  5HHZ A;  1E0Y A;  1QLU A;  3JS8 A;  3LAE A;  1W1L A;  3S1C A;  2W3R A;  1E8G A;  1V97 A;  4PWB A;  4BC7 A;  1JRP A;  1VDV A;  4PWC A;  3HRD C;  3PM9 A;  3SR6 B;  1FO4 A;  4ZOH B;  5AWV A;  2VFS A;  2BVG A;  2W55 A;  4HG0 A;  2OAI A;  4PZF A;  3W8X A;  1DZN A;  2RK5 A;  3TSJ A;  1AHV A;  2UUU A;  3W8Z A;  2W54 A;  4PVH A;  4BBY A;  4XLO A;  3S1E A;  1FFV C;  5I1V A;  4PVJ A;  1AHU A;  2YVS A;  1N60 C;  1I19 A;  1DII A;  2Q85 A;  3FW8 A;  2EXR A;  2MBR A;  1WVF A;  5G5H B;  1WVE A;  4DNS A;  1WYG A;  1N5X A;  3C0P A;  1W1R A;  2AXR A;  2P4P A;  2IPI A;  5FXE A;  4O95 A;  1DIQ A;  2VFT A;  3NVW B;  4BCA A;  3NVZ B;  1VAO A;  2PLI A;  1HSK A;  1FIQ B;  5FXD A;  4UD8 A;  2Q4W A;  4JAY A;  1MBB A;  3S1F A;  3D2D A;  3NRZ B;  3KJM A;  1JRO A;  3RJ8 A;  2I0K A;  5HQX A;  2VFU A;  1W1O A;  4EC3 A;  5D79 A;  3AMZ A;  3EUB 3;  1E8H A;  2NQW A;  2E3T A;  4MLA A;  4ML8 A;  3BW7 A;  4JB1 A;  2BVF A;  5HMR A;  1QLT A;  1N62 C;  2P3H A;  4BC9 A;  1SB3 B;  2WDW A;  2R2Z A;  3TSH A;  1E8F A;  3NVV B;  2QKN A;  1ZXI C;  3VTE A;  3ETR B;  1W1M A;  3FWA A;  3B9J B;  2GQU A;  1W1Q A;  3GSY A;  2UUV A;  3PQB A;  1MBT A;  2GQT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3W8ZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations