4OAL | Genus

Total Genus 139

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	139
sequence length	492
structure length	444
Chain Sequence	GGRLSVDASDIAEASRDFGGVARAEPMAVFHPRAAGDVAGLVGAAFRSARGFRVSARGHGHSISGQAQAAGGVVVDMSARALPVHSAALGGHYVDVWGGELWVDVLNWTLSHGGLAPRSWTDYLYLSVGGTLSNAGISGQAFHHGPQISNVYELDVVTGKGEVVTCSETENPDLFFGVLGGLGQFGIITRARIALERAPKRVRWIRALYSNFSEFTADQERLISLGRRFDYVEGFVVAAVLYCLEVTKNYDDETAGSVDQDVDTLLGELNFLPGTVFTTDLPYVDFLDRVHKAELKLRAKGMWEVPHPWLNLFVPASRIADFDRGVFRGVLGGPVLIYPMNKHKWDPRSSAVTPDEEVFYLVAFLRSALPGAPESLEALARQNQRILDFCAGTGIGAKQYLPGHKARHEWAEHFGAARWDRFARLKAEFDPRAILAAGQGIFRP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Zea mays
publication title	Kinetic and structural investigation of the cytokinin oxidase/dehydrogenase active site. pubmed doi rcsb
molecule keywords	Cytokinin dehydrogenase 4
total genus	139
structure length	444
sequence length	492
chains with identical sequence	B
ec nomenclature	ec 1.5.99.12: Cytokinin dehydrogenase.
pdb deposition date	2014-01-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF09265	Cytokin-bind	Cytokinin dehydrogenase 1, FAD and cytokinin binding

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	4oalA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	4oalA02
3.40.462.10	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	FAD-linked oxidases, C-terminal domain	4oalA03

3KJMA 1AHZA 1DIQA 3JS8A 2R2ZA 1N62C 1QLTA 2E3TA 1N5XA 5ADZA 3NS1B 1AHVA 5AE2A 3D2HA 3FWAA 3NVZB 3W8XA 2NQWA 5FXFA 1QLUA 3NVYB 3VTEA 3S1FA 3W8WA 1AHUA 3AMZA 2P13A 2VAOA 3I99A 5HMRA 2Q4WA 5FXPA 1N60C 4MLAA 5D79A 2GQUA 1FO4A 3NVWB 4PZFA 3NVVB 1V97A 4JAYA 2OAIA 2R8DA 3TX1A 3AM9A 1N63C 1HSKA 1JRPA 2GQTA 4OALA 2P4PA 3FW9A 4HG0A 4BC9A 1E8HA 5FXDA 1W1SA 2BVFA 4BC7A 1WVFA 4BBYA 5G5GB 3FW8A 4ML8A 4PVEA 2BVHA 1N61C 5HQXA 2MBRA 4PWBA 2O3GA 1W1JA 1ZR6A 4PVHA 4EC3A 1SB3B 3W8ZA 2RK5A 1MBTA 4DNSA 2W54A 1DZNA 1JROA 5AE1A 1VDVA 2VFSA 3D2JA 4ZOHB 2VFTA 3S1CA 3HRDC 1I19A 5HHZA 3TSJA 2P3HA 3AN1A 4JB1A 3SR6B 1FIQB 2EXRA 4BCAA 1E8FA 1T3QC 3EUB3 1DIIA 3GSYA 2W3SA 2W55A 3LAEA 1FFVC 4PYTA 3TSHA 4PVKA 5FXEA 3S1DA 1FFUC 3BW7A 2VFVA 1W1QA 1WVEA 2YVSA 4XLOA 5AE3A 3LLBA 1VAOA 4PVJA 1UXYA 1W1RA 1W1KA 2VFUA 2QKNA 3D2DA 1E0YA 3PM9A 1W1OA 2W3RA 3DEDA 5G5HB 2PLSA 3FW7A 2I0KA 3NRZB 1RM6B 3C0PA 4O95A 4UD8A 1E8GA 2VFRA 3B9JB 2PLIA 3S1EA 2QPMA 1W1LA 3ETRB 1WYGA 1F0XA 1W1MA 1ZXIC 2AXRA 1MBBA 2Q85A 1N5WC 4PWCA 3DQ0A 2BVGA
chains in the Genus database with same CATH superfamily

5L6FA 3KJMA 3POPA 1AHZA 1DIQA 3JS8A 2R2ZA 1N62C 1QLTA 2E3TA 1N5XA 2Y4GA 5ADZA 3NS1B 1AHVA 5AE2A 3D2HA 2IPIA 2Y3RA 3FWAA 3NVZB 3W8XA 2NQWA 5FXFA 5K8EA 1QLUA 3NVYB 3VTEA 3S1FA 3W8WA 1AHUA 3AMZA 2P13A 2VAOA 3I99A 5HMRA 2Q4WA 5FXPA 1N60C 2UUUA 4MLAA 5D79A 2GQUA 1FO4A 3EJBB 3NVWB 4PZFA 3NVVB 1V97A 4JAYA 2OAIA 2R8DA 3TX1A 5L6GA 3AM9A 1N63C 1HSKA 1JRPA 2GQTA 4OALA 2P4PA 3FW9A 4HG0A 4BC9A 1E8HA 5FXDA 1W1SA 2BVFA 4BC7A 1WVFA 4BBYA 5G5GB 3FW8A 4ML8A 4PVEA 2BVHA 3RJAA 1N61C 5HQXA 3RJ8A 5I1WA 2MBRA 4PWBA 2O3GA 1W1JA 1ZR6A 4PVHA 4EC3A 1SB3B 3W8ZA 2RK5A 1MBTA 4DNSA 2W54A 1DZNA 1JROA 5AE1A 1VDVA 2VFSA 3D2JA 3HSUA 2UUVA 3PQBA 4ZOHB 2Y08A 2VFTA 3S1CA 3EJDB 3HRDC 1I19A 5HHZA 3TSJA 2P3HA 3AN1A 4JB1A 3SR6B 5AWVA 1FIQB 2EXRA 4BCAA 1E8FA 1T3QC 3EUB3 1DIIA 3GSYA 2W3SA 2W55A 3LAEA 1FFVC 4PYTA 3TSHA 4PVKA 5FXEA 2Y3SA 3S1DA 1FFUC 3BW7A 2VFVA 1W1QA 1WVEA 2YVSA 4XLOA 5AE3A 3LLBA 1VAOA 4PVJA 1UXYA 1W1RA 1W1KA 2VFUA 2QKNA 3D2DA 1E0YA 3PM9A 1W1OA 2W3RA 3DEDA 5G5HB 2PLSA 3FW7A 2I0KA 3EJEB 3NRZB 1RM6B 3C0PA 4O95A 4UD8A 1E8GA 5I1VA 2VFRA 3B9JB 2PLIA 3S1EA 2QPMA 1W1LA 3ETRB 1WYGA 1F0XA 1W1MA 1ZXIC 2AXRA 1MBBA 2WDWA 2Q85A 1N5WC 4PWCA 3DQ0A 2BVGA
chains in the Genus database with same CATH topology

5L6FA 3KJMA 3POPA 1AHZA 1DIQA 3JS8A 2R2ZA 1N62C 1QLTA 2E3TA 1N5XA 2Y4GA 5ADZA 3NS1B 1AHVA 5AE2A 3D2HA 2IPIA 2Y3RA 3FWAA 3NVZB 3W8XA 2NQWA 5FXFA 5K8EA 1QLUA 3NVYB 3VTEA 3S1FA 3W8WA 1AHUA 3AMZA 2P13A 2VAOA 3I99A 5HMRA 2Q4WA 5FXPA 1N60C 2UUUA 4MLAA 5D79A 2GQUA 1FO4A 3NVWB 4PZFA 3NVVB 1V97A 4JAYA 2OAIA 2R8DA 3TX1A 5L6GA 3AM9A 1N63C 1HSKA 1JRPA 2GQTA 4OALA 2P4PA 3FW9A 4HG0A 4BC9A 1E8HA 5FXDA 1W1SA 2BVFA 4BC7A 1WVFA 4BBYA 5G5GB 3FW8A 4ML8A 4PVEA 2BVHA 3RJAA 1N61C 5HQXA 3RJ8A 5I1WA 2MBRA 4PWBA 2O3GA 1W1JA 1ZR6A 4PVHA 4EC3A 1SB3B 3W8ZA 2RK5A 1MBTA 4DNSA 2W54A 1DZNA 1JROA 5AE1A 1VDVA 2VFSA 3D2JA 3HSUA 2UUVA 3PQBA 4ZOHB 2Y08A 2VFTA 3S1CA 3HRDC 1I19A 5HHZA 3TSJA 2P3HA 3AN1A 4JB1A 3SR6B 5AWVA 1FIQB 2EXRA 4BCAA 1E8FA 1T3QC 3EUB3 1DIIA 3GSYA 2W3SA 2W55A 3LAEA 1FFVC 4PYTA 3TSHA 4PVKA 5FXEA 2Y3SA 3S1DA 1FFUC 3BW7A 2VFVA 1W1QA 1WVEA 2YVSA 4XLOA 5AE3A 3LLBA 1VAOA 4PVJA 1UXYA 1W1RA 1W1KA 2VFUA 2QKNA 3D2DA 1E0YA 3PM9A 1W1OA 2W3RA 3DEDA 5G5HB 2PLSA 3FW7A 2I0KA 3NRZB 1RM6B 3C0PA 4O95A 4UD8A 1E8GA 5I1VA 2VFRA 3B9JB 2PLIA 3S1EA 2QPMA 1W1LA 3ETRB 1WYGA 1F0XA 1W1MA 1ZXIC 2AXRA 1MBBA 2WDWA 2Q85A 1N5WC 4PWCA 3DQ0A 2BVGA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3KJM A;  1AHZ A;  1DIQ A;  3JS8 A;  2R2Z A;  1N62 C;  1QLT A;  2E3T A;  1N5X A;  5ADZ A;  3NS1 B;  1AHV A;  5AE2 A;  3D2H A;  3FWA A;  3NVZ B;  3W8X A;  2NQW A;  5FXF A;  1QLU A;  3NVY B;  3VTE A;  3S1F A;  3W8W A;  1AHU A;  3AMZ A;  2P13 A;  2VAO A;  3I99 A;  5HMR A;  2Q4W A;  5FXP A;  1N60 C;  4MLA A;  5D79 A;  2GQU A;  1FO4 A;  3NVW B;  4PZF A;  3NVV B;  1V97 A;  4JAY A;  2OAI A;  2R8D A;  3TX1 A;  3AM9 A;  1N63 C;  1HSK A;  1JRP A;  2GQT A;  4OAL A;  2P4P A;  3FW9 A;  4HG0 A;  4BC9 A;  1E8H A;  5FXD A;  1W1S A;  2BVF A;  4BC7 A;  1WVF A;  4BBY A;  5G5G B;  3FW8 A;  4ML8 A;  4PVE A;  2BVH A;  1N61 C;  5HQX A;  2MBR A;  4PWB A;  2O3G A;  1W1J A;  1ZR6 A;  4PVH A;  4EC3 A;  1SB3 B;  3W8Z A;  2RK5 A;  1MBT A;  4DNS A;  2W54 A;  1DZN A;  1JRO A;  5AE1 A;  1VDV A;  2VFS A;  3D2J A;  4ZOH B;  2VFT A;  3S1C A;  3HRD C;  1I19 A;  5HHZ A;  3TSJ A;  2P3H A;  3AN1 A;  4JB1 A;  3SR6 B;  1FIQ B;  2EXR A;  4BCA A;  1E8F A;  1T3Q C;  3EUB 3;  1DII A;  3GSY A;  2W3S A;  2W55 A;  3LAE A;  1FFV C;  4PYT A;  3TSH A;  4PVK A;  5FXE A;  3S1D A;  1FFU C;  3BW7 A;  2VFV A;  1W1Q A;  1WVE A;  2YVS A;  4XLO A;  5AE3 A;  3LLB A;  1VAO A;  4PVJ A;  1UXY A;  1W1R A;  1W1K A;  2VFU A;  2QKN A;  3D2D A;  1E0Y A;  3PM9 A;  1W1O A;  2W3R A;  3DED A;  5G5H B;  2PLS A;  3FW7 A;  2I0K A;  3NRZ B;  1RM6 B;  3C0P A;  4O95 A;  4UD8 A;  1E8G A;  2VFR A;  3B9J B;  2PLI A;  3S1E A;  2QPM A;  1W1L A;  3ETR B;  1WYG A;  1F0X A;  1W1M A;  1ZXI C;  2AXR A;  1MBB A;  2Q85 A;  1N5W C;  4PWC A;  3DQ0 A;  2BVG A; 
#chains in the Genus database with same CATH topology
 5L6F A;  3KJM A;  3POP A;  1AHZ A;  1DIQ A;  3JS8 A;  2R2Z A;  1N62 C;  1QLT A;  2E3T A;  1N5X A;  2Y4G A;  5ADZ A;  3NS1 B;  1AHV A;  5AE2 A;  3D2H A;  2IPI A;  2Y3R A;  3FWA A;  3NVZ B;  3W8X A;  2NQW A;  5FXF A;  5K8E A;  1QLU A;  3NVY B;  3VTE A;  3S1F A;  3W8W A;  1AHU A;  3AMZ A;  2P13 A;  2VAO A;  3I99 A;  5HMR A;  2Q4W A;  5FXP A;  1N60 C;  2UUU A;  4MLA A;  5D79 A;  2GQU A;  1FO4 A;  3EJB B;  3NVW B;  4PZF A;  3NVV B;  1V97 A;  4JAY A;  2OAI A;  2R8D A;  3TX1 A;  5L6G A;  3AM9 A;  1N63 C;  1HSK A;  1JRP A;  2GQT A;  4OAL A;  2P4P A;  3FW9 A;  4HG0 A;  4BC9 A;  1E8H A;  5FXD A;  1W1S A;  2BVF A;  4BC7 A;  1WVF A;  4BBY A;  5G5G B;  3FW8 A;  4ML8 A;  4PVE A;  2BVH A;  3RJA A;  1N61 C;  5HQX A;  3RJ8 A;  5I1W A;  2MBR A;  4PWB A;  2O3G A;  1W1J A;  1ZR6 A;  4PVH A;  4EC3 A;  1SB3 B;  3W8Z A;  2RK5 A;  1MBT A;  4DNS A;  2W54 A;  1DZN A;  1JRO A;  5AE1 A;  1VDV A;  2VFS A;  3D2J A;  3HSU A;  2UUV A;  3PQB A;  4ZOH B;  2Y08 A;  2VFT A;  3S1C A;  3EJD B;  3HRD C;  1I19 A;  5HHZ A;  3TSJ A;  2P3H A;  3AN1 A;  4JB1 A;  3SR6 B;  5AWV A;  1FIQ B;  2EXR A;  4BCA A;  1E8F A;  1T3Q C;  3EUB 3;  1DII A;  3GSY A;  2W3S A;  2W55 A;  3LAE A;  1FFV C;  4PYT A;  3TSH A;  4PVK A;  5FXE A;  2Y3S A;  3S1D A;  1FFU C;  3BW7 A;  2VFV A;  1W1Q A;  1WVE A;  2YVS A;  4XLO A;  5AE3 A;  3LLB A;  1VAO A;  4PVJ A;  1UXY A;  1W1R A;  1W1K A;  2VFU A;  2QKN A;  3D2D A;  1E0Y A;  3PM9 A;  1W1O A;  2W3R A;  3DED A;  5G5H B;  2PLS A;  3FW7 A;  2I0K A;  3EJE B;  3NRZ B;  1RM6 B;  3C0P A;  4O95 A;  4UD8 A;  1E8G A;  5I1V A;  2VFR A;  3B9J B;  2PLI A;  3S1E A;  2QPM A;  1W1L A;  3ETR B;  1WYG A;  1F0X A;  1W1M A;  1ZXI C;  2AXR A;  1MBB A;  2WDW A;  2Q85 A;  1N5W C;  4PWC A;  3DQ0 A;  2BVG A; 
#chains in the Genus database with same CATH homology
 5L6F A;  3KJM A;  3POP A;  1AHZ A;  1DIQ A;  3JS8 A;  2R2Z A;  1N62 C;  1QLT A;  2E3T A;  1N5X A;  2Y4G A;  5ADZ A;  3NS1 B;  1AHV A;  5AE2 A;  3D2H A;  2IPI A;  2Y3R A;  3FWA A;  3NVZ B;  3W8X A;  2NQW A;  5FXF A;  5K8E A;  1QLU A;  3NVY B;  3VTE A;  3S1F A;  3W8W A;  1AHU A;  3AMZ A;  2P13 A;  2VAO A;  3I99 A;  5HMR A;  2Q4W A;  5FXP A;  1N60 C;  2UUU A;  4MLA A;  5D79 A;  2GQU A;  1FO4 A;  3NVW B;  4PZF A;  3NVV B;  1V97 A;  4JAY A;  2OAI A;  2R8D A;  3TX1 A;  5L6G A;  3AM9 A;  1N63 C;  1HSK A;  1JRP A;  2GQT A;  4OAL A;  2P4P A;  3FW9 A;  4HG0 A;  4BC9 A;  1E8H A;  5FXD A;  1W1S A;  2BVF A;  4BC7 A;  1WVF A;  4BBY A;  5G5G B;  3FW8 A;  4ML8 A;  4PVE A;  2BVH A;  3RJA A;  1N61 C;  5HQX A;  3RJ8 A;  5I1W A;  2MBR A;  4PWB A;  2O3G A;  1W1J A;  1ZR6 A;  4PVH A;  4EC3 A;  1SB3 B;  3W8Z A;  2RK5 A;  1MBT A;  4DNS A;  2W54 A;  1DZN A;  1JRO A;  5AE1 A;  1VDV A;  2VFS A;  3D2J A;  3HSU A;  2UUV A;  3PQB A;  4ZOH B;  2Y08 A;  2VFT A;  3S1C A;  3HRD C;  1I19 A;  5HHZ A;  3TSJ A;  2P3H A;  3AN1 A;  4JB1 A;  3SR6 B;  5AWV A;  1FIQ B;  2EXR A;  4BCA A;  1E8F A;  1T3Q C;  3EUB 3;  1DII A;  3GSY A;  2W3S A;  2W55 A;  3LAE A;  1FFV C;  4PYT A;  3TSH A;  4PVK A;  5FXE A;  2Y3S A;  3S1D A;  1FFU C;  3BW7 A;  2VFV A;  1W1Q A;  1WVE A;  2YVS A;  4XLO A;  5AE3 A;  3LLB A;  1VAO A;  4PVJ A;  1UXY A;  1W1R A;  1W1K A;  2VFU A;  2QKN A;  3D2D A;  1E0Y A;  3PM9 A;  1W1O A;  2W3R A;  3DED A;  5G5H B;  2PLS A;  3FW7 A;  2I0K A;  3NRZ B;  1RM6 B;  3C0P A;  4O95 A;  4UD8 A;  1E8G A;  5I1V A;  2VFR A;  3B9J B;  2PLI A;  3S1E A;  2QPM A;  1W1L A;  3ETR B;  1WYG A;  1F0X A;  1W1M A;  1ZXI C;  2AXR A;  1MBB A;  2WDW A;  2Q85 A;  1N5W C;  4PWC A;  3DQ0 A;  2BVG A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4OALA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations