4PVE | Genus

Total Genus 162

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	162
sequence length	490
structure length	490
Chain Sequence	EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Phleum pratense
publication title	Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction. pubmed doi rcsb
molecule keywords	Pollen allergen Phl p 4.0202
total genus	162
structure length	490
sequence length	490
ec nomenclature
pdb deposition date	2014-03-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF08031	BBE	Berberine and berberine like

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	4pveA01
3.30.465.50	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	4pveA02
3.40.462.20	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	Vanillyl-alcohol Oxidase; Chain A, domain 3	4pveA03

2Y08A 1W1OA 1T3QC 2W55A 5L6GA 3KJMA 5ADZA 2Q4WA 1F0XA 3NS1B 2Y3RA 1W1RA 5AE1A 2VFSA 5K8EA 1E8HA 3PM9A 2VFRA 2QKNA 5D79A 1QLTA 1W1JA 1N60C 1FFVC 1VAOA 3DQ0A 5FXDA 2IPIA 3RJAA 2GQTA 1W1LA 5HHZA 3W8WA 5I1WA 3AM9A 3ETRB 1N5WC 3VTEA 3S1CA 4ZOHB 2I0KA 4BC9A 1W1SA 3EUB3 1WVFA 4DNSA 2EXRA 3B9JB 4EC3A 1E8FA 1MBBA 2VAOA 1N61C 3PQBA 5HQXA 5AE2A 4UD8A 4PVKA 2VFVA 1FO4A 2MBRA 3JS8A 5I1VA 4PWCA 4BBYA 1W1KA 3TX1A 1MBTA 3I99A 1I19A 3BW7A 3FW8A 1W1QA 3HSUA 1FIQB 5FXEA 1W1MA 1E8GA 1QLUA 3W8XA 5AE3A 1AHVA 3NVZB 1HSKA 2W3RA 1N63C 1AHZA 5FXFA 2WDWA 1FFUC 1V97A 3S1EA 1ZXIC 1DZNA 3GSYA 3S1DA 3D2HA 2GQUA 4XLOA 3SR6B 2W54A 4PVHA 3FW7A 1JROA 2W3SA 4ML8A 1UXYA 4JAYA 2Q85A 3NRZB 1N5XA 1N62C 1AHUA 3W8ZA 2BVGA 5HMRA 1E0YA 3D2JA 3C0PA 4BC7A 4PYTA 5L6FA 3FWAA 2VFUA 2BVHA 2Y4GA 1VDVA 4O95A 2QPMA 1DIIA 1DIQA 5AWVA 5FXPA 1WVEA 3TSHA 2E3TA 4PVEA 4BCAA 3FW9A 3POPA 4PWBA 3TSJA 3RJ8A 4MLAA 2Y3SA 4JB1A 4PVJA 2VFTA 3AN1A 3S1FA 2BVFA 3D2DA 3AMZA 4OALA 1ZR6A 2AXRA 1WYGA 4PZFA
chains in the Genus database with same CATH superfamily

2Y08A 1W1OA 1T3QC 2W55A 5L6GA 3KJMA 5ADZA 2Q4WA 1F0XA 3NS1B 2Y3RA 1W1RA 2PLIA 5AE1A 2VFSA 5K8EA 1E8HA 3PM9A 2VFRA 3DEDA 2QKNA 5D79A 1QLTA 1W1JA 1N60C 1FFVC 1VAOA 3DQ0A 5FXDA 2IPIA 3RJAA 2GQTA 1W1LA 5HHZA 3W8WA 5I1WA 3AM9A 3ETRB 1N5WC 3VTEA 3S1CA 4ZOHB 2I0KA 3EJBB 4BC9A 1W1SA 3EUB3 1WVFA 4DNSA 2EXRA 3B9JB 4EC3A 1E8FA 1MBBA 2VAOA 1N61C 3PQBA 5HQXA 5AE2A 4UD8A 3LAEA 4PVKA 2VFVA 1FO4A 2MBRA 3JS8A 5I1VA 4PWCA 4BBYA 1W1KA 3TX1A 1MBTA 2YVSA 3I99A 1I19A 3BW7A 2O3GA 3FW8A 1W1QA 3HSUA 1FIQB 5FXEA 1W1MA 5G5HB 1E8GA 1QLUA 3W8XA 2UUVA 5AE3A 1AHVA 3NVZB 1HSKA 3NVYB 2W3RA 1N63C 1AHZA 5FXFA 2UUUA 2R8DA 2WDWA 1FFUC 1V97A 3S1EA 1ZXIC 1DZNA 5G5GB 3GSYA 3S1DA 3D2HA 2GQUA 4XLOA 3LLBA 3SR6B 2W54A 2NQWA 3HRDC 4PVHA 3FW7A 1JROA 2W3SA 2P3HA 1RM6B 3EJEB 4ML8A 1UXYA 4JAYA 2Q85A 3NRZB 1N5XA 1N62C 1AHUA 3W8ZA 2BVGA 5HMRA 1E0YA 3D2JA 3C0PA 1SB3B 2P13A 4BC7A 4PYTA 5L6FA 3FWAA 2VFUA 2BVHA 2P4PA 2Y4GA 1VDVA 4O95A 2QPMA 3NVWB 1DIIA 1DIQA 5AWVA 5FXPA 1WVEA 2OAIA 3TSHA 2E3TA 4PVEA 4BCAA 3FW9A 3POPA 4PWBA 3TSJA 3RJ8A 4MLAA 2Y3SA 4JB1A 4PVJA 3EJDB 3NVVB 2VFTA 3AN1A 3S1FA 2BVFA 3D2DA 2RK5A 3AMZA 4OALA 4HG0A 1JRPA 2R2ZA 1ZR6A 2PLSA 2AXRA 1WYGA 4PZFA
chains in the Genus database with same CATH topology

2Y08A 1W1OA 1T3QC 2W55A 5L6GA 3KJMA 5ADZA 2Q4WA 1F0XA 3NS1B 2Y3RA 1W1RA 2PLIA 5AE1A 2VFSA 5K8EA 1E8HA 3PM9A 2VFRA 3DEDA 2QKNA 5D79A 1QLTA 1W1JA 1N60C 1FFVC 1VAOA 3DQ0A 5FXDA 2IPIA 3RJAA 2GQTA 1W1LA 5HHZA 3W8WA 5I1WA 3AM9A 3ETRB 1N5WC 3VTEA 3S1CA 4ZOHB 2I0KA 4BC9A 1W1SA 3EUB3 1WVFA 4DNSA 2EXRA 3B9JB 4EC3A 1E8FA 1MBBA 2VAOA 1N61C 3PQBA 5HQXA 5AE2A 4UD8A 3LAEA 4PVKA 2VFVA 1FO4A 2MBRA 3JS8A 5I1VA 4PWCA 4BBYA 1W1KA 3TX1A 1MBTA 2YVSA 3I99A 1I19A 3BW7A 2O3GA 3FW8A 1W1QA 3HSUA 1FIQB 5FXEA 1W1MA 5G5HB 1E8GA 1QLUA 3W8XA 2UUVA 5AE3A 1AHVA 3NVZB 1HSKA 3NVYB 2W3RA 1N63C 1AHZA 5FXFA 2UUUA 2R8DA 2WDWA 1FFUC 1V97A 3S1EA 1ZXIC 1DZNA 5G5GB 3GSYA 3S1DA 3D2HA 2GQUA 4XLOA 3LLBA 3SR6B 2W54A 2NQWA 3HRDC 4PVHA 3FW7A 1JROA 2W3SA 2P3HA 1RM6B 4ML8A 1UXYA 4JAYA 2Q85A 3NRZB 1N5XA 1N62C 1AHUA 3W8ZA 2BVGA 5HMRA 1E0YA 3D2JA 3C0PA 1SB3B 2P13A 4BC7A 4PYTA 5L6FA 3FWAA 2VFUA 2BVHA 2P4PA 2Y4GA 1VDVA 4O95A 2QPMA 3NVWB 1DIIA 1DIQA 5AWVA 5FXPA 1WVEA 2OAIA 3TSHA 2E3TA 4PVEA 4BCAA 3FW9A 3POPA 4PWBA 3TSJA 3RJ8A 4MLAA 2Y3SA 4JB1A 4PVJA 3NVVB 2VFTA 3AN1A 3S1FA 2BVFA 3D2DA 2RK5A 3AMZA 4OALA 4HG0A 1JRPA 2R2ZA 1ZR6A 2PLSA 2AXRA 1WYGA 4PZFA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2Y08 A;  1W1O A;  1T3Q C;  2W55 A;  5L6G A;  3KJM A;  5ADZ A;  2Q4W A;  1F0X A;  3NS1 B;  2Y3R A;  1W1R A;  5AE1 A;  2VFS A;  5K8E A;  1E8H A;  3PM9 A;  2VFR A;  2QKN A;  5D79 A;  1QLT A;  1W1J A;  1N60 C;  1FFV C;  1VAO A;  3DQ0 A;  5FXD A;  2IPI A;  3RJA A;  2GQT A;  1W1L A;  5HHZ A;  3W8W A;  5I1W A;  3AM9 A;  3ETR B;  1N5W C;  3VTE A;  3S1C A;  4ZOH B;  2I0K A;  4BC9 A;  1W1S A;  3EUB 3;  1WVF A;  4DNS A;  2EXR A;  3B9J B;  4EC3 A;  1E8F A;  1MBB A;  2VAO A;  1N61 C;  3PQB A;  5HQX A;  5AE2 A;  4UD8 A;  4PVK A;  2VFV A;  1FO4 A;  2MBR A;  3JS8 A;  5I1V A;  4PWC A;  4BBY A;  1W1K A;  3TX1 A;  1MBT A;  3I99 A;  1I19 A;  3BW7 A;  3FW8 A;  1W1Q A;  3HSU A;  1FIQ B;  5FXE A;  1W1M A;  1E8G A;  1QLU A;  3W8X A;  5AE3 A;  1AHV A;  3NVZ B;  1HSK A;  2W3R A;  1N63 C;  1AHZ A;  5FXF A;  2WDW A;  1FFU C;  1V97 A;  3S1E A;  1ZXI C;  1DZN A;  3GSY A;  3S1D A;  3D2H A;  2GQU A;  4XLO A;  3SR6 B;  2W54 A;  4PVH A;  3FW7 A;  1JRO A;  2W3S A;  4ML8 A;  1UXY A;  4JAY A;  2Q85 A;  3NRZ B;  1N5X A;  1N62 C;  1AHU A;  3W8Z A;  2BVG A;  5HMR A;  1E0Y A;  3D2J A;  3C0P A;  4BC7 A;  4PYT A;  5L6F A;  3FWA A;  2VFU A;  2BVH A;  2Y4G A;  1VDV A;  4O95 A;  2QPM A;  1DII A;  1DIQ A;  5AWV A;  5FXP A;  1WVE A;  3TSH A;  2E3T A;  4PVE A;  4BCA A;  3FW9 A;  3POP A;  4PWB A;  3TSJ A;  3RJ8 A;  4MLA A;  2Y3S A;  4JB1 A;  4PVJ A;  2VFT A;  3AN1 A;  3S1F A;  2BVF A;  3D2D A;  3AMZ A;  4OAL A;  1ZR6 A;  2AXR A;  1WYG A;  4PZF A; 
#chains in the Genus database with same CATH topology
 2Y08 A;  1W1O A;  1T3Q C;  2W55 A;  5L6G A;  3KJM A;  5ADZ A;  2Q4W A;  1F0X A;  3NS1 B;  2Y3R A;  1W1R A;  2PLI A;  5AE1 A;  2VFS A;  5K8E A;  1E8H A;  3PM9 A;  2VFR A;  3DED A;  2QKN A;  5D79 A;  1QLT A;  1W1J A;  1N60 C;  1FFV C;  1VAO A;  3DQ0 A;  5FXD A;  2IPI A;  3RJA A;  2GQT A;  1W1L A;  5HHZ A;  3W8W A;  5I1W A;  3AM9 A;  3ETR B;  1N5W C;  3VTE A;  3S1C A;  4ZOH B;  2I0K A;  3EJB B;  4BC9 A;  1W1S A;  3EUB 3;  1WVF A;  4DNS A;  2EXR A;  3B9J B;  4EC3 A;  1E8F A;  1MBB A;  2VAO A;  1N61 C;  3PQB A;  5HQX A;  5AE2 A;  4UD8 A;  3LAE A;  4PVK A;  2VFV A;  1FO4 A;  2MBR A;  3JS8 A;  5I1V A;  4PWC A;  4BBY A;  1W1K A;  3TX1 A;  1MBT A;  2YVS A;  3I99 A;  1I19 A;  3BW7 A;  2O3G A;  3FW8 A;  1W1Q A;  3HSU A;  1FIQ B;  5FXE A;  1W1M A;  5G5H B;  1E8G A;  1QLU A;  3W8X A;  2UUV A;  5AE3 A;  1AHV A;  3NVZ B;  1HSK A;  3NVY B;  2W3R A;  1N63 C;  1AHZ A;  5FXF A;  2UUU A;  2R8D A;  2WDW A;  1FFU C;  1V97 A;  3S1E A;  1ZXI C;  1DZN A;  5G5G B;  3GSY A;  3S1D A;  3D2H A;  2GQU A;  4XLO A;  3LLB A;  3SR6 B;  2W54 A;  2NQW A;  3HRD C;  4PVH A;  3FW7 A;  1JRO A;  2W3S A;  2P3H A;  1RM6 B;  3EJE B;  4ML8 A;  1UXY A;  4JAY A;  2Q85 A;  3NRZ B;  1N5X A;  1N62 C;  1AHU A;  3W8Z A;  2BVG A;  5HMR A;  1E0Y A;  3D2J A;  3C0P A;  1SB3 B;  2P13 A;  4BC7 A;  4PYT A;  5L6F A;  3FWA A;  2VFU A;  2BVH A;  2P4P A;  2Y4G A;  1VDV A;  4O95 A;  2QPM A;  3NVW B;  1DII A;  1DIQ A;  5AWV A;  5FXP A;  1WVE A;  2OAI A;  3TSH A;  2E3T A;  4PVE A;  4BCA A;  3FW9 A;  3POP A;  4PWB A;  3TSJ A;  3RJ8 A;  4MLA A;  2Y3S A;  4JB1 A;  4PVJ A;  3EJD B;  3NVV B;  2VFT A;  3AN1 A;  3S1F A;  2BVF A;  3D2D A;  2RK5 A;  3AMZ A;  4OAL A;  4HG0 A;  1JRP A;  2R2Z A;  1ZR6 A;  2PLS A;  2AXR A;  1WYG A;  4PZF A; 
#chains in the Genus database with same CATH homology
 2Y08 A;  1W1O A;  1T3Q C;  2W55 A;  5L6G A;  3KJM A;  5ADZ A;  2Q4W A;  1F0X A;  3NS1 B;  2Y3R A;  1W1R A;  2PLI A;  5AE1 A;  2VFS A;  5K8E A;  1E8H A;  3PM9 A;  2VFR A;  3DED A;  2QKN A;  5D79 A;  1QLT A;  1W1J A;  1N60 C;  1FFV C;  1VAO A;  3DQ0 A;  5FXD A;  2IPI A;  3RJA A;  2GQT A;  1W1L A;  5HHZ A;  3W8W A;  5I1W A;  3AM9 A;  3ETR B;  1N5W C;  3VTE A;  3S1C A;  4ZOH B;  2I0K A;  4BC9 A;  1W1S A;  3EUB 3;  1WVF A;  4DNS A;  2EXR A;  3B9J B;  4EC3 A;  1E8F A;  1MBB A;  2VAO A;  1N61 C;  3PQB A;  5HQX A;  5AE2 A;  4UD8 A;  3LAE A;  4PVK A;  2VFV A;  1FO4 A;  2MBR A;  3JS8 A;  5I1V A;  4PWC A;  4BBY A;  1W1K A;  3TX1 A;  1MBT A;  2YVS A;  3I99 A;  1I19 A;  3BW7 A;  2O3G A;  3FW8 A;  1W1Q A;  3HSU A;  1FIQ B;  5FXE A;  1W1M A;  5G5H B;  1E8G A;  1QLU A;  3W8X A;  2UUV A;  5AE3 A;  1AHV A;  3NVZ B;  1HSK A;  3NVY B;  2W3R A;  1N63 C;  1AHZ A;  5FXF A;  2UUU A;  2R8D A;  2WDW A;  1FFU C;  1V97 A;  3S1E A;  1ZXI C;  1DZN A;  5G5G B;  3GSY A;  3S1D A;  3D2H A;  2GQU A;  4XLO A;  3LLB A;  3SR6 B;  2W54 A;  2NQW A;  3HRD C;  4PVH A;  3FW7 A;  1JRO A;  2W3S A;  2P3H A;  1RM6 B;  4ML8 A;  1UXY A;  4JAY A;  2Q85 A;  3NRZ B;  1N5X A;  1N62 C;  1AHU A;  3W8Z A;  2BVG A;  5HMR A;  1E0Y A;  3D2J A;  3C0P A;  1SB3 B;  2P13 A;  4BC7 A;  4PYT A;  5L6F A;  3FWA A;  2VFU A;  2BVH A;  2P4P A;  2Y4G A;  1VDV A;  4O95 A;  2QPM A;  3NVW B;  1DII A;  1DIQ A;  5AWV A;  5FXP A;  1WVE A;  2OAI A;  3TSH A;  2E3T A;  4PVE A;  4BCA A;  3FW9 A;  3POP A;  4PWB A;  3TSJ A;  3RJ8 A;  4MLA A;  2Y3S A;  4JB1 A;  4PVJ A;  3NVV B;  2VFT A;  3AN1 A;  3S1F A;  2BVF A;  3D2D A;  2RK5 A;  3AMZ A;  4OAL A;  4HG0 A;  1JRP A;  2R2Z A;  1ZR6 A;  2PLS A;  2AXR A;  1WYG A;  4PZF A;

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similar chains in the Genus database (?% sequence similarity)

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#similar chains, but unknotted
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4PVEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations