4PVH | Genus

Total Genus 163

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	163
sequence length	490
structure length	490
Chain Sequence	EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGHFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__085430951693562__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__085430951693562__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4PVH/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__085430951693562__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"085430951693562","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4PVH/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__085430951693562__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Phleum pratense
publication title	Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction. pubmed doi rcsb
molecule keywords	Pollen allergen Phl p 4.0202
total genus	163
structure length	490
sequence length	490
ec nomenclature
pdb deposition date	2014-03-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF08031	BBE	Berberine and berberine like

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	4pvhA01
3.30.465.50	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	4pvhA02
3.40.462.20	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	Vanillyl-alcohol Oxidase; Chain A, domain 3	4pvhA03

3JS8A 4XLOA 2QPMA 1WVFA 2GQTA 3POPA 2VFSA 1N60C 4BCAA 1W1QA 1WVEA 2W55A 1E8FA 1W1KA 4PVJA 4O95A 1FIQB 5ADZA 3GSYA 2BVGA 5FXDA 2IPIA 3W8WA 4JAYA 1W1LA 3AN1A 2BVHA 5AE1A 2VFTA 4UD8A 3NS1B 5K8EA 3FWAA 3SR6B 5FXFA 4PVKA 3FW8A 3PM9A 1N62C 3NRZB 1DIQA 1UXYA 2MBRA 4ZOHB 3W8XA 2W54A 1JROA 1DZNA 3S1EA 4JB1A 5I1WA 4PVHA 4PWCA 4BBYA 2BVFA 3DQ0A 1E0YA 3D2DA 3KJMA 1FFUC 1HSKA 5D79A 1N5XA 3PQBA 3RJAA 3EUB3 5L6GA 1F0XA 1QLUA 2Y08A 1AHUA 2VFVA 1W1RA 1MBBA 3TSHA 1T3QC 5FXEA 1I19A 1N63C 5AE3A 5HHZA 2Y3RA 1VDVA 1V97A 2E3TA 5HMRA 3FW9A 1N61C 5AE2A 1E8HA 1DIIA 4PVEA 2W3SA 3W8ZA 1FFVC 2I0KA 2VFUA 3AMZA 4PYTA 5L6FA 3ETRB 3D2HA 2Y4GA 1WYGA 3D2JA 1MBTA 5AWVA 4EC3A 4OALA 3NVZB 3BW7A 3VTEA 3RJ8A 2W3RA 3FW7A 1W1MA 2VAOA 2VFRA 1AHZA 4BC7A 1AHVA 2WDWA 2GQUA 4PWBA 5FXPA 1E8GA 3S1DA 5HQXA 1W1OA 2EXRA 2AXRA 2Q4WA 1N5WC 1FO4A 2Q85A 3C0PA 2QKNA 3AM9A 4PZFA 3I99A 3S1CA 3B9JB 1QLTA 3TX1A 1ZR6A 1ZXIC 5I1VA 1W1SA 4MLAA 3TSJA 1VAOA 4BC9A 4DNSA 2Y3SA 1W1JA 3S1FA 3HSUA 4ML8A
chains in the Genus database with same CATH superfamily

3JS8A 4XLOA 2QPMA 1WVFA 1RM6B 2GQTA 3POPA 2VFSA 1N60C 4BCAA 1W1QA 1WVEA 2W55A 2UUUA 1E8FA 1JRPA 1W1KA 2P4PA 4PVJA 4O95A 5G5GB 1FIQB 2PLSA 5ADZA 3GSYA 2BVGA 5FXDA 2IPIA 3W8WA 4JAYA 1W1LA 3AN1A 2BVHA 3LAEA 5AE1A 2VFTA 3NVWB 4UD8A 3NS1B 5K8EA 3LLBA 3FWAA 3SR6B 2R8DA 5FXFA 4PVKA 2OAIA 3FW8A 3PM9A 1N62C 3EJBB 3NVYB 3NRZB 1DIQA 1UXYA 2MBRA 4ZOHB 2PLIA 3W8XA 2W54A 1JROA 1DZNA 3S1EA 4JB1A 5I1WA 4PVHA 4PWCA 4BBYA 2BVFA 3DQ0A 3HRDC 1E0YA 3D2DA 3KJMA 1FFUC 1HSKA 5D79A 1N5XA 3PQBA 3RJAA 3EUB3 5L6GA 1F0XA 1QLUA 2Y08A 1AHUA 2VFVA 1W1RA 1MBBA 3TSHA 1T3QC 2YVSA 5FXEA 1I19A 1N63C 5AE3A 5HHZA 2Y3RA 3EJDB 5G5HB 1VDVA 1V97A 2E3TA 5HMRA 2UUVA 3FW9A 1N61C 5AE2A 1E8HA 1DIIA 4PVEA 2W3SA 3W8ZA 1FFVC 2I0KA 2VFUA 3AMZA 4PYTA 2O3GA 5L6FA 3ETRB 3D2HA 2Y4GA 1WYGA 3D2JA 1MBTA 5AWVA 4EC3A 3NVVB 4OALA 3NVZB 3BW7A 3VTEA 2R2ZA 3RJ8A 2W3RA 3FW7A 1W1MA 2VAOA 2VFRA 1AHZA 4BC7A 1AHVA 2WDWA 2GQUA 4PWBA 5FXPA 1E8GA 3S1DA 5HQXA 3DEDA 1W1OA 2EXRA 2AXRA 2NQWA 2Q4WA 1N5WC 1FO4A 2Q85A 3C0PA 2P13A 2QKNA 2P3HA 3AM9A 4PZFA 3EJEB 1SB3B 3I99A 3S1CA 3B9JB 1QLTA 3TX1A 1ZR6A 1ZXIC 2RK5A 5I1VA 1W1SA 4MLAA 3TSJA 1VAOA 4BC9A 4DNSA 2Y3SA 1W1JA 3S1FA 3HSUA 4HG0A 4ML8A
chains in the Genus database with same CATH topology

3JS8A 4XLOA 2QPMA 1WVFA 1RM6B 2GQTA 3POPA 2VFSA 1N60C 4BCAA 1W1QA 1WVEA 2W55A 2UUUA 1E8FA 1JRPA 1W1KA 2P4PA 4PVJA 4O95A 5G5GB 1FIQB 2PLSA 5ADZA 3GSYA 2BVGA 5FXDA 2IPIA 3W8WA 4JAYA 1W1LA 3AN1A 2BVHA 3LAEA 5AE1A 2VFTA 4UD8A 3NVWB 3NS1B 5K8EA 3LLBA 3FWAA 3SR6B 2R8DA 5FXFA 4PVKA 2OAIA 3FW8A 3PM9A 1N62C 3NVYB 3NRZB 1DIQA 1UXYA 2MBRA 4ZOHB 2PLIA 3W8XA 2W54A 1JROA 1DZNA 3S1EA 4JB1A 5I1WA 4PVHA 4PWCA 4BBYA 2BVFA 3DQ0A 3HRDC 1E0YA 3D2DA 3KJMA 1FFUC 1HSKA 5D79A 1N5XA 3PQBA 3RJAA 3EUB3 5L6GA 1F0XA 1QLUA 2Y08A 1AHUA 2VFVA 1W1RA 1MBBA 3TSHA 1T3QC 2YVSA 5FXEA 1I19A 1N63C 5AE3A 5HHZA 2Y3RA 5G5HB 1VDVA 1V97A 2E3TA 5HMRA 2UUVA 3FW9A 1N61C 5AE2A 1E8HA 1DIIA 4PVEA 2W3SA 3W8ZA 1FFVC 2I0KA 2VFUA 3AMZA 4PYTA 2O3GA 5L6FA 3ETRB 3D2HA 2Y4GA 1WYGA 3D2JA 1MBTA 5AWVA 4EC3A 4OALA 3NVVB 3NVZB 3BW7A 3VTEA 2R2ZA 3RJ8A 2W3RA 3FW7A 1W1MA 2VAOA 2VFRA 1AHZA 4BC7A 1AHVA 2WDWA 2GQUA 4PWBA 5FXPA 1E8GA 3S1DA 5HQXA 3DEDA 1W1OA 2EXRA 2AXRA 2NQWA 2Q4WA 1N5WC 1FO4A 2Q85A 3C0PA 2P13A 2QKNA 2P3HA 3AM9A 4PZFA 1SB3B 3I99A 3S1CA 3B9JB 1QLTA 3TX1A 1ZR6A 1ZXIC 2RK5A 5I1VA 1W1SA 4MLAA 3TSJA 1VAOA 4BC9A 4DNSA 2Y3SA 1W1JA 3S1FA 3HSUA 4HG0A 4ML8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3JS8 A;  4XLO A;  2QPM A;  1WVF A;  2GQT A;  3POP A;  2VFS A;  1N60 C;  4BCA A;  1W1Q A;  1WVE A;  2W55 A;  1E8F A;  1W1K A;  4PVJ A;  4O95 A;  1FIQ B;  5ADZ A;  3GSY A;  2BVG A;  5FXD A;  2IPI A;  3W8W A;  4JAY A;  1W1L A;  3AN1 A;  2BVH A;  5AE1 A;  2VFT A;  4UD8 A;  3NS1 B;  5K8E A;  3FWA A;  3SR6 B;  5FXF A;  4PVK A;  3FW8 A;  3PM9 A;  1N62 C;  3NRZ B;  1DIQ A;  1UXY A;  2MBR A;  4ZOH B;  3W8X A;  2W54 A;  1JRO A;  1DZN A;  3S1E A;  4JB1 A;  5I1W A;  4PVH A;  4PWC A;  4BBY A;  2BVF A;  3DQ0 A;  1E0Y A;  3D2D A;  3KJM A;  1FFU C;  1HSK A;  5D79 A;  1N5X A;  3PQB A;  3RJA A;  3EUB 3;  5L6G A;  1F0X A;  1QLU A;  2Y08 A;  1AHU A;  2VFV A;  1W1R A;  1MBB A;  3TSH A;  1T3Q C;  5FXE A;  1I19 A;  1N63 C;  5AE3 A;  5HHZ A;  2Y3R A;  1VDV A;  1V97 A;  2E3T A;  5HMR A;  3FW9 A;  1N61 C;  5AE2 A;  1E8H A;  1DII A;  4PVE A;  2W3S A;  3W8Z A;  1FFV C;  2I0K A;  2VFU A;  3AMZ A;  4PYT A;  5L6F A;  3ETR B;  3D2H A;  2Y4G A;  1WYG A;  3D2J A;  1MBT A;  5AWV A;  4EC3 A;  4OAL A;  3NVZ B;  3BW7 A;  3VTE A;  3RJ8 A;  2W3R A;  3FW7 A;  1W1M A;  2VAO A;  2VFR A;  1AHZ A;  4BC7 A;  1AHV A;  2WDW A;  2GQU A;  4PWB A;  5FXP A;  1E8G A;  3S1D A;  5HQX A;  1W1O A;  2EXR A;  2AXR A;  2Q4W A;  1N5W C;  1FO4 A;  2Q85 A;  3C0P A;  2QKN A;  3AM9 A;  4PZF A;  3I99 A;  3S1C A;  3B9J B;  1QLT A;  3TX1 A;  1ZR6 A;  1ZXI C;  5I1V A;  1W1S A;  4MLA A;  3TSJ A;  1VAO A;  4BC9 A;  4DNS A;  2Y3S A;  1W1J A;  3S1F A;  3HSU A;  4ML8 A; 
#chains in the Genus database with same CATH topology
 3JS8 A;  4XLO A;  2QPM A;  1WVF A;  1RM6 B;  2GQT A;  3POP A;  2VFS A;  1N60 C;  4BCA A;  1W1Q A;  1WVE A;  2W55 A;  2UUU A;  1E8F A;  1JRP A;  1W1K A;  2P4P A;  4PVJ A;  4O95 A;  5G5G B;  1FIQ B;  2PLS A;  5ADZ A;  3GSY A;  2BVG A;  5FXD A;  2IPI A;  3W8W A;  4JAY A;  1W1L A;  3AN1 A;  2BVH A;  3LAE A;  5AE1 A;  2VFT A;  3NVW B;  4UD8 A;  3NS1 B;  5K8E A;  3LLB A;  3FWA A;  3SR6 B;  2R8D A;  5FXF A;  4PVK A;  2OAI A;  3FW8 A;  3PM9 A;  1N62 C;  3EJB B;  3NVY B;  3NRZ B;  1DIQ A;  1UXY A;  2MBR A;  4ZOH B;  2PLI A;  3W8X A;  2W54 A;  1JRO A;  1DZN A;  3S1E A;  4JB1 A;  5I1W A;  4PVH A;  4PWC A;  4BBY A;  2BVF A;  3DQ0 A;  3HRD C;  1E0Y A;  3D2D A;  3KJM A;  1FFU C;  1HSK A;  5D79 A;  1N5X A;  3PQB A;  3RJA A;  3EUB 3;  5L6G A;  1F0X A;  1QLU A;  2Y08 A;  1AHU A;  2VFV A;  1W1R A;  1MBB A;  3TSH A;  1T3Q C;  2YVS A;  5FXE A;  1I19 A;  1N63 C;  5AE3 A;  5HHZ A;  2Y3R A;  3EJD B;  5G5H B;  1VDV A;  1V97 A;  2E3T A;  5HMR A;  2UUV A;  3FW9 A;  1N61 C;  5AE2 A;  1E8H A;  1DII A;  4PVE A;  2W3S A;  3W8Z A;  1FFV C;  2I0K A;  2VFU A;  3AMZ A;  4PYT A;  2O3G A;  5L6F A;  3ETR B;  3D2H A;  2Y4G A;  1WYG A;  3D2J A;  1MBT A;  5AWV A;  4EC3 A;  3NVV B;  4OAL A;  3NVZ B;  3BW7 A;  3VTE A;  2R2Z A;  3RJ8 A;  2W3R A;  3FW7 A;  1W1M A;  2VAO A;  2VFR A;  1AHZ A;  4BC7 A;  1AHV A;  2WDW A;  2GQU A;  4PWB A;  5FXP A;  1E8G A;  3S1D A;  5HQX A;  3DED A;  1W1O A;  2EXR A;  2AXR A;  2NQW A;  2Q4W A;  1N5W C;  1FO4 A;  2Q85 A;  3C0P A;  2P13 A;  2QKN A;  2P3H A;  3AM9 A;  4PZF A;  3EJE B;  1SB3 B;  3I99 A;  3S1C A;  3B9J B;  1QLT A;  3TX1 A;  1ZR6 A;  1ZXI C;  2RK5 A;  5I1V A;  1W1S A;  4MLA A;  3TSJ A;  1VAO A;  4BC9 A;  4DNS A;  2Y3S A;  1W1J A;  3S1F A;  3HSU A;  4HG0 A;  4ML8 A; 
#chains in the Genus database with same CATH homology
 3JS8 A;  4XLO A;  2QPM A;  1WVF A;  1RM6 B;  2GQT A;  3POP A;  2VFS A;  1N60 C;  4BCA A;  1W1Q A;  1WVE A;  2W55 A;  2UUU A;  1E8F A;  1JRP A;  1W1K A;  2P4P A;  4PVJ A;  4O95 A;  5G5G B;  1FIQ B;  2PLS A;  5ADZ A;  3GSY A;  2BVG A;  5FXD A;  2IPI A;  3W8W A;  4JAY A;  1W1L A;  3AN1 A;  2BVH A;  3LAE A;  5AE1 A;  2VFT A;  4UD8 A;  3NVW B;  3NS1 B;  5K8E A;  3LLB A;  3FWA A;  3SR6 B;  2R8D A;  5FXF A;  4PVK A;  2OAI A;  3FW8 A;  3PM9 A;  1N62 C;  3NVY B;  3NRZ B;  1DIQ A;  1UXY A;  2MBR A;  4ZOH B;  2PLI A;  3W8X A;  2W54 A;  1JRO A;  1DZN A;  3S1E A;  4JB1 A;  5I1W A;  4PVH A;  4PWC A;  4BBY A;  2BVF A;  3DQ0 A;  3HRD C;  1E0Y A;  3D2D A;  3KJM A;  1FFU C;  1HSK A;  5D79 A;  1N5X A;  3PQB A;  3RJA A;  3EUB 3;  5L6G A;  1F0X A;  1QLU A;  2Y08 A;  1AHU A;  2VFV A;  1W1R A;  1MBB A;  3TSH A;  1T3Q C;  2YVS A;  5FXE A;  1I19 A;  1N63 C;  5AE3 A;  5HHZ A;  2Y3R A;  5G5H B;  1VDV A;  1V97 A;  2E3T A;  5HMR A;  2UUV A;  3FW9 A;  1N61 C;  5AE2 A;  1E8H A;  1DII A;  4PVE A;  2W3S A;  3W8Z A;  1FFV C;  2I0K A;  2VFU A;  3AMZ A;  4PYT A;  2O3G A;  5L6F A;  3ETR B;  3D2H A;  2Y4G A;  1WYG A;  3D2J A;  1MBT A;  5AWV A;  4EC3 A;  4OAL A;  3NVV B;  3NVZ B;  3BW7 A;  3VTE A;  2R2Z A;  3RJ8 A;  2W3R A;  3FW7 A;  1W1M A;  2VAO A;  2VFR A;  1AHZ A;  4BC7 A;  1AHV A;  2WDW A;  2GQU A;  4PWB A;  5FXP A;  1E8G A;  3S1D A;  5HQX A;  3DED A;  1W1O A;  2EXR A;  2AXR A;  2NQW A;  2Q4W A;  1N5W C;  1FO4 A;  2Q85 A;  3C0P A;  2P13 A;  2QKN A;  2P3H A;  3AM9 A;  4PZF A;  1SB3 B;  3I99 A;  3S1C A;  3B9J B;  1QLT A;  3TX1 A;  1ZR6 A;  1ZXI C;  2RK5 A;  5I1V A;  1W1S A;  4MLA A;  3TSJ A;  1VAO A;  4BC9 A;  4DNS A;  2Y3S A;  1W1J A;  3S1F A;  3HSU A;  4HG0 A;  4ML8 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4PVHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations