4PWBA

Phl p 4 i153v variant, a glucose oxidase, pressurized with xenon
Total Genus 164
50100150200250300350400450020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
sequence length
490
structure length
490
Chain Sequence
EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTVGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Phleum pratense
publication title Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction.
pubmed doi rcsb
molecule keywords Pollen allergen Phl p 4.0202
total genus 164
structure length 490
sequence length 490
ec nomenclature
pdb deposition date 2014-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4pwbA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4pwbA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4pwbA03
1WVFA 5FXFA 3B9JB 4PVJA 5I1VA 4PVKA 2E3TA 3S1FA 4BCAA 1F0XA 1UXYA 5K8EA 3DQ0A 4OALA 3AM9A 3BW7A 5HHZA 2MBRA 5D79A 2W54A 3AMZA 3S1DA 3POPA 2IPIA 1E8HA 2EXRA 3EUB3 4ML8A 2Y4GA 4O95A 3TSJA 3PQBA 1FFVC 1W1RA 2VFVA 3S1EA 4PZFA 3W8WA 2BVGA 1QLUA 1AHZA 2I0KA 4UD8A 5AE2A 1W1MA 1WVEA 1QLTA 2Q85A 3SR6B 2Y08A 1WYGA 2BVHA 4PWBA 1JROA 1T3QC 1FFUC 1W1KA 2Q4WA 3C0PA 1N5XA 4JB1A 4ZOHB 1W1SA 5AE1A 5ADZA 5L6FA 2QKNA 1DIQA 2VFTA 1N63C 2BVFA 3TSHA 1W1LA 1ZXIC 3NS1B 3GSYA 3KJMA 2Y3RA 1I19A 2Y3SA 1AHUA 1ZR6A 5L6GA 4EC3A 3RJAA 4DNSA 1HSKA 2VFUA 5HMRA 3S1CA 1DIIA 1MBTA 3HSUA 5FXDA 3I99A 3TX1A 1W1QA 4MLAA 1N61C 5AWVA 2GQTA 1E8FA 2W55A 1DZNA 3NRZB 1VDVA 4PYTA 5I1WA 1N60C 3FW9A 1W1OA 4BBYA 2VFSA 1MBBA 1E0YA 3W8ZA 2WDWA 3PM9A 1FIQB 1AHVA 2W3SA 3AN1A 5AE3A 2QPMA 2VFRA 3ETRB 3VTEA 2VAOA 3D2HA 1E8GA 3W8XA 1N5WC 1VAOA 4PWCA 3RJ8A 4PVEA 4XLOA 1N62C 4JAYA 4BC9A 1FO4A 2GQUA 4PVHA 3FW7A 3FW8A 3JS8A 1W1JA 3NVZB 3FWAA 5FXPA 3D2DA 3D2JA 5HQXA 2W3RA 5FXEA 1V97A 2AXRA 4BC7A
chains in the Genus database with same CATH superfamily
1WVFA 5FXFA 3B9JB 4PVJA 5I1VA 4PVKA 2E3TA 2UUVA 3S1FA 2YVSA 4BCAA 1F0XA 1UXYA 5K8EA 3DQ0A 4OALA 3AM9A 2PLSA 3BW7A 5HHZA 2MBRA 5G5HB 5D79A 2W54A 3AMZA 3S1DA 1SB3B 3POPA 2IPIA 1E8HA 2EXRA 3EUB3 4ML8A 2Y4GA 4O95A 3TSJA 3PQBA 1FFVC 1W1RA 2VFVA 3S1EA 4PZFA 3W8WA 2BVGA 1QLUA 1AHZA 2I0KA 4UD8A 2R8DA 5AE2A 1W1MA 1WVEA 1QLTA 2Q85A 3SR6B 2Y08A 1WYGA 3EJEB 2BVHA 4PWBA 5G5GB 1JROA 1T3QC 1FFUC 1W1KA 2Q4WA 3C0PA 1N5XA 4JB1A 4ZOHB 1W1SA 3NVYB 5AE1A 5ADZA 5L6FA 2R2ZA 2QKNA 2RK5A 1DIQA 2VFTA 1N63C 2BVFA 3TSHA 3LAEA 1W1LA 1ZXIC 3NS1B 3EJBB 3GSYA 3KJMA 2OAIA 2Y3RA 1I19A 3NVWB 2Y3SA 1AHUA 1ZR6A 3EJDB 5L6GA 4EC3A 3RJAA 4DNSA 1HSKA 2VFUA 5HMRA 3S1CA 1DIIA 1MBTA 3HSUA 5FXDA 3I99A 3TX1A 1W1QA 4MLAA 1N61C 2UUUA 5AWVA 2GQTA 1E8FA 2W55A 1DZNA 3NRZB 1VDVA 4PYTA 5I1WA 1N60C 3FW9A 1W1OA 2NQWA 4BBYA 4HG0A 3DEDA 2VFSA 1MBBA 1E0YA 3W8ZA 2WDWA 1RM6B 3PM9A 1FIQB 1AHVA 2W3SA 3AN1A 5AE3A 2QPMA 2VFRA 2P4PA 3LLBA 3ETRB 3VTEA 2VAOA 3D2HA 1E8GA 3NVVB 3W8XA 2PLIA 1N5WC 1JRPA 2P3HA 1VAOA 4PWCA 3RJ8A 4PVEA 4XLOA 1N62C 4JAYA 4BC9A 1FO4A 2GQUA 4PVHA 3FW7A 3FW8A 3JS8A 1W1JA 2P13A 3NVZB 3FWAA 5FXPA 3D2DA 3D2JA 2O3GA 5HQXA 2W3RA 3HRDC 5FXEA 1V97A 2AXRA 4BC7A
chains in the Genus database with same CATH topology
1WVFA 5FXFA 3B9JB 4PVJA 5I1VA 4PVKA 2E3TA 2UUVA 3S1FA 2YVSA 4BCAA 1F0XA 1UXYA 5K8EA 3DQ0A 4OALA 3AM9A 2PLSA 3BW7A 5HHZA 2MBRA 5G5HB 5D79A 2W54A 3AMZA 3S1DA 1SB3B 3POPA 2IPIA 1E8HA 2EXRA 3EUB3 4ML8A 2Y4GA 4O95A 3TSJA 3PQBA 1FFVC 1W1RA 2VFVA 3S1EA 4PZFA 3W8WA 2BVGA 1QLUA 1AHZA 2I0KA 4UD8A 2R8DA 5AE2A 1W1MA 1WVEA 1QLTA 2Q85A 3SR6B 2Y08A 1WYGA 2BVHA 4PWBA 5G5GB 1JROA 1T3QC 1FFUC 1W1KA 2Q4WA 3C0PA 1N5XA 4JB1A 4ZOHB 1W1SA 5AE1A 3NVYB 5ADZA 5L6FA 2R2ZA 2QKNA 2RK5A 1DIQA 2VFTA 1N63C 2BVFA 3TSHA 3LAEA 1W1LA 1ZXIC 3NS1B 3GSYA 3KJMA 2OAIA 2Y3RA 1I19A 3NVWB 2Y3SA 1AHUA 1ZR6A 5L6GA 4EC3A 3RJAA 4DNSA 1HSKA 2VFUA 5HMRA 3S1CA 1DIIA 1MBTA 3HSUA 5FXDA 3I99A 3TX1A 1W1QA 4MLAA 1N61C 2UUUA 5AWVA 2GQTA 1E8FA 2W55A 1DZNA 3NRZB 1VDVA 4PYTA 5I1WA 1N60C 3FW9A 1W1OA 2NQWA 4BBYA 4HG0A 3DEDA 2VFSA 1MBBA 1E0YA 3W8ZA 2WDWA 1RM6B 3PM9A 1FIQB 1AHVA 2W3SA 3AN1A 5AE3A 2QPMA 2VFRA 2P4PA 3LLBA 3ETRB 3VTEA 2VAOA 3D2HA 1E8GA 3W8XA 3NVVB 2PLIA 1N5WC 1JRPA 2P3HA 1VAOA 4PWCA 3RJ8A 4PVEA 4XLOA 1N62C 4JAYA 4BC9A 1FO4A 2GQUA 4PVHA 3FW7A 3FW8A 3JS8A 1W1JA 2P13A 3NVZB 3FWAA 5FXPA 3D2DA 3D2JA 2O3GA 5HQXA 2W3RA 3HRDC 5FXEA 1V97A 2AXRA 4BC7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WVF A;  5FXF A;  3B9J B;  4PVJ A;  5I1V A;  4PVK A;  2E3T A;  3S1F A;  4BCA A;  1F0X A;  1UXY A;  5K8E A;  3DQ0 A;  4OAL A;  3AM9 A;  3BW7 A;  5HHZ A;  2MBR A;  5D79 A;  2W54 A;  3AMZ A;  3S1D A;  3POP A;  2IPI A;  1E8H A;  2EXR A;  3EUB 3;  4ML8 A;  2Y4G A;  4O95 A;  3TSJ A;  3PQB A;  1FFV C;  1W1R A;  2VFV A;  3S1E A;  4PZF A;  3W8W A;  2BVG A;  1QLU A;  1AHZ A;  2I0K A;  4UD8 A;  5AE2 A;  1W1M A;  1WVE A;  1QLT A;  2Q85 A;  3SR6 B;  2Y08 A;  1WYG A;  2BVH A;  4PWB A;  1JRO A;  1T3Q C;  1FFU C;  1W1K A;  2Q4W A;  3C0P A;  1N5X A;  4JB1 A;  4ZOH B;  1W1S A;  5AE1 A;  5ADZ A;  5L6F A;  2QKN A;  1DIQ A;  2VFT A;  1N63 C;  2BVF A;  3TSH A;  1W1L A;  1ZXI C;  3NS1 B;  3GSY A;  3KJM A;  2Y3R A;  1I19 A;  2Y3S A;  1AHU A;  1ZR6 A;  5L6G A;  4EC3 A;  3RJA A;  4DNS A;  1HSK A;  2VFU A;  5HMR A;  3S1C A;  1DII A;  1MBT A;  3HSU A;  5FXD A;  3I99 A;  3TX1 A;  1W1Q A;  4MLA A;  1N61 C;  5AWV A;  2GQT A;  1E8F A;  2W55 A;  1DZN A;  3NRZ B;  1VDV A;  4PYT A;  5I1W A;  1N60 C;  3FW9 A;  1W1O A;  4BBY A;  2VFS A;  1MBB A;  1E0Y A;  3W8Z A;  2WDW A;  3PM9 A;  1FIQ B;  1AHV A;  2W3S A;  3AN1 A;  5AE3 A;  2QPM A;  2VFR A;  3ETR B;  3VTE A;  2VAO A;  3D2H A;  1E8G A;  3W8X A;  1N5W C;  1VAO A;  4PWC A;  3RJ8 A;  4PVE A;  4XLO A;  1N62 C;  4JAY A;  4BC9 A;  1FO4 A;  2GQU A;  4PVH A;  3FW7 A;  3FW8 A;  3JS8 A;  1W1J A;  3NVZ B;  3FWA A;  5FXP A;  3D2D A;  3D2J A;  5HQX A;  2W3R A;  5FXE A;  1V97 A;  2AXR A;  4BC7 A; 
#chains in the Genus database with same CATH topology
 1WVF A;  5FXF A;  3B9J B;  4PVJ A;  5I1V A;  4PVK A;  2E3T A;  2UUV A;  3S1F A;  2YVS A;  4BCA A;  1F0X A;  1UXY A;  5K8E A;  3DQ0 A;  4OAL A;  3AM9 A;  2PLS A;  3BW7 A;  5HHZ A;  2MBR A;  5G5H B;  5D79 A;  2W54 A;  3AMZ A;  3S1D A;  1SB3 B;  3POP A;  2IPI A;  1E8H A;  2EXR A;  3EUB 3;  4ML8 A;  2Y4G A;  4O95 A;  3TSJ A;  3PQB A;  1FFV C;  1W1R A;  2VFV A;  3S1E A;  4PZF A;  3W8W A;  2BVG A;  1QLU A;  1AHZ A;  2I0K A;  4UD8 A;  2R8D A;  5AE2 A;  1W1M A;  1WVE A;  1QLT A;  2Q85 A;  3SR6 B;  2Y08 A;  1WYG A;  3EJE B;  2BVH A;  4PWB A;  5G5G B;  1JRO A;  1T3Q C;  1FFU C;  1W1K A;  2Q4W A;  3C0P A;  1N5X A;  4JB1 A;  4ZOH B;  1W1S A;  3NVY B;  5AE1 A;  5ADZ A;  5L6F A;  2R2Z A;  2QKN A;  2RK5 A;  1DIQ A;  2VFT A;  1N63 C;  2BVF A;  3TSH A;  3LAE A;  1W1L A;  1ZXI C;  3NS1 B;  3EJB B;  3GSY A;  3KJM A;  2OAI A;  2Y3R A;  1I19 A;  3NVW B;  2Y3S A;  1AHU A;  1ZR6 A;  3EJD B;  5L6G A;  4EC3 A;  3RJA A;  4DNS A;  1HSK A;  2VFU A;  5HMR A;  3S1C A;  1DII A;  1MBT A;  3HSU A;  5FXD A;  3I99 A;  3TX1 A;  1W1Q A;  4MLA A;  1N61 C;  2UUU A;  5AWV A;  2GQT A;  1E8F A;  2W55 A;  1DZN A;  3NRZ B;  1VDV A;  4PYT A;  5I1W A;  1N60 C;  3FW9 A;  1W1O A;  2NQW A;  4BBY A;  4HG0 A;  3DED A;  2VFS A;  1MBB A;  1E0Y A;  3W8Z A;  2WDW A;  1RM6 B;  3PM9 A;  1FIQ B;  1AHV A;  2W3S A;  3AN1 A;  5AE3 A;  2QPM A;  2VFR A;  2P4P A;  3LLB A;  3ETR B;  3VTE A;  2VAO A;  3D2H A;  1E8G A;  3NVV B;  3W8X A;  2PLI A;  1N5W C;  1JRP A;  2P3H A;  1VAO A;  4PWC A;  3RJ8 A;  4PVE A;  4XLO A;  1N62 C;  4JAY A;  4BC9 A;  1FO4 A;  2GQU A;  4PVH A;  3FW7 A;  3FW8 A;  3JS8 A;  1W1J A;  2P13 A;  3NVZ B;  3FWA A;  5FXP A;  3D2D A;  3D2J A;  2O3G A;  5HQX A;  2W3R A;  3HRD C;  5FXE A;  1V97 A;  2AXR A;  4BC7 A; 
#chains in the Genus database with same CATH homology
 1WVF A;  5FXF A;  3B9J B;  4PVJ A;  5I1V A;  4PVK A;  2E3T A;  2UUV A;  3S1F A;  2YVS A;  4BCA A;  1F0X A;  1UXY A;  5K8E A;  3DQ0 A;  4OAL A;  3AM9 A;  2PLS A;  3BW7 A;  5HHZ A;  2MBR A;  5G5H B;  5D79 A;  2W54 A;  3AMZ A;  3S1D A;  1SB3 B;  3POP A;  2IPI A;  1E8H A;  2EXR A;  3EUB 3;  4ML8 A;  2Y4G A;  4O95 A;  3TSJ A;  3PQB A;  1FFV C;  1W1R A;  2VFV A;  3S1E A;  4PZF A;  3W8W A;  2BVG A;  1QLU A;  1AHZ A;  2I0K A;  4UD8 A;  2R8D A;  5AE2 A;  1W1M A;  1WVE A;  1QLT A;  2Q85 A;  3SR6 B;  2Y08 A;  1WYG A;  2BVH A;  4PWB A;  5G5G B;  1JRO A;  1T3Q C;  1FFU C;  1W1K A;  2Q4W A;  3C0P A;  1N5X A;  4JB1 A;  4ZOH B;  1W1S A;  5AE1 A;  3NVY B;  5ADZ A;  5L6F A;  2R2Z A;  2QKN A;  2RK5 A;  1DIQ A;  2VFT A;  1N63 C;  2BVF A;  3TSH A;  3LAE A;  1W1L A;  1ZXI C;  3NS1 B;  3GSY A;  3KJM A;  2OAI A;  2Y3R A;  1I19 A;  3NVW B;  2Y3S A;  1AHU A;  1ZR6 A;  5L6G A;  4EC3 A;  3RJA A;  4DNS A;  1HSK A;  2VFU A;  5HMR A;  3S1C A;  1DII A;  1MBT A;  3HSU A;  5FXD A;  3I99 A;  3TX1 A;  1W1Q A;  4MLA A;  1N61 C;  2UUU A;  5AWV A;  2GQT A;  1E8F A;  2W55 A;  1DZN A;  3NRZ B;  1VDV A;  4PYT A;  5I1W A;  1N60 C;  3FW9 A;  1W1O A;  2NQW A;  4BBY A;  4HG0 A;  3DED A;  2VFS A;  1MBB A;  1E0Y A;  3W8Z A;  2WDW A;  1RM6 B;  3PM9 A;  1FIQ B;  1AHV A;  2W3S A;  3AN1 A;  5AE3 A;  2QPM A;  2VFR A;  2P4P A;  3LLB A;  3ETR B;  3VTE A;  2VAO A;  3D2H A;  1E8G A;  3W8X A;  3NVV B;  2PLI A;  1N5W C;  1JRP A;  2P3H A;  1VAO A;  4PWC A;  3RJ8 A;  4PVE A;  4XLO A;  1N62 C;  4JAY A;  4BC9 A;  1FO4 A;  2GQU A;  4PVH A;  3FW7 A;  3FW8 A;  3JS8 A;  1W1J A;  2P13 A;  3NVZ B;  3FWA A;  5FXP A;  3D2D A;  3D2J A;  2O3G A;  5HQX A;  2W3R A;  3HRD C;  5FXE A;  1V97 A;  2AXR A;  4BC7 A; 
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