4XLO | Genus

Total Genus 141

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	141
sequence length	458
structure length	458
Chain Sequence	QLDPATLAAFSAAFRGELIWPSDADYDEARRIWNGTIDRRPALIARCTSTPDVVAAVSFARKSGLLVAVRGGGHSMAGHSVCDGGIVIDLSLMNSIKVSRRLRRARAQGGCLLGAFDTATQAHMLATPAGVVSHTGLGGLVLGGGFGWLSRKYGLSIDNLTSVEIVTADGGVLTASDTENPDLFWAVRGGGGNFGVVTAFEFDLHRVGPVRFASTYYSLDEGPQVIRAWRDHMATAPDELTWALYLRLAPPLPELPADMHGKPVICAMSCWIGDPHEGERQLESILHAGKPHGLTKATLPYRALQAYSFPGAVVPDRIYTKSGYLNELSDEATDTVLEHAADIASPFTQLELLYLGGAVARVPDDATAYPNRQSPFVTNLAAAWMDPTEDARHTAWAREGYRALAGHLSGGYVNFMNPGEADRTREAYGAAKFERLQGVKAKYDPTNLFRLNQNIPPS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Streptomyces maritimus
publication title	Flavin-mediated dual oxidation controls an enzymatic Favorskii-type rearrangement. pubmed doi rcsb
molecule keywords	FAD-dependent oxygenase EncM
total genus	141
structure length	458
sequence length	458
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2015-01-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01565	FAD_binding_4	FAD binding domain
A	PF08031	BBE	Berberine and berberine like

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2	4xloA01
3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3	4xloA02
3.40.462.20	Alpha Beta	3-Layer(aba) Sandwich	Vanillyl-alcohol Oxidase; Chain A, domain 3	Vanillyl-alcohol Oxidase; Chain A, domain 3	4xloA03

3D2DA 3TSJA 2W54A 3FW9A 3TX1A 2VAOA 1AHVA 3BW7A 1WYGA 3FW7A 2I0KA 3W8XA 1N5XA 4DNSA 5G5GB 5K8EA 2VFRA 4PVJA 1SB3B 1E8GA 3HRDC 3ETRB 5AE2A 1DIIA 1HSKA 4HG0A 5FXDA 5I1VA 5FXFA 2R8DA 3PM9A 3KJMA 1W1LA 3FW8A 3DEDA 2Q85A 2W3SA 3S1FA 1N5WC 4PWCA 5L6FA 1ZR6A 2BVFA 2W55A 2NQWA 1ZXIC 2YVSA 5HQXA 2GQUA 1FFVC 3S1CA 3VTEA 4PVKA 3NVZB 1DIQA 3D2HA 2VFVA 3POPA 3S1EA 2W3RA 5AE1A 1N61C 2Y4GA 1N63C 1QLTA 1E8HA 2BVGA 1W1JA 3PQBA 2P3HA 4O95A 1T3QC 3AM9A 2VFTA 1WVEA 2R2ZA 1W1SA 1AHZA 4PWBA 3EUB3 2VFSA 2E3TA 4OALA 2Y3SA 5AWVA 3NVWB 1VDVA 1UXYA 4UD8A 2BVHA 3LLBA 3NRZB 5AE3A 1FO4A 3HSUA 4BC7A 2Y3RA 3W8WA 1FFUC 1RM6B 3NS1B 1AHUA 4ZOHB 3SR6B 3TSHA 3RJAA 3RJ8A 5L6GA 1F0XA 1V97A 1QLUA 4MLAA 1MBBA 3B9JB 3LAEA 3I99A 4JB1A 2Q4WA 1FIQB 3NVVB 2QPMA 1JROA 2MBRA 4PYTA 3AN1A 3C0PA 2IPIA 2AXRA 4BCAA 3GSYA 2QKNA 5HHZA 2PLIA 4PVEA 5FXPA 5G5HB 4PZFA 3S1DA 3DQ0A 4JAYA 2VFUA 2GQTA 4EC3A 4ML8A 1DZNA 1I19A 1W1RA 2EXRA 4PVHA 5D79A 5FXEA 2P13A 1E0YA 1E8FA 1W1MA 1MBTA 2WDWA 3AMZA 3D2JA 1W1KA 4BC9A 5HMRA 2OAIA 1JRPA 3FWAA 3NVYB 5I1WA 2O3GA 2Y08A 5ADZA 1N62C 1WVFA 1W1OA 3JS8A 4BBYA 2RK5A 4XLOA 2P4PA 3W8ZA 1N60C 1W1QA 1VAOA 2PLSA
chains in the Genus database with same CATH superfamily

3D2DA 3TSJA 2W54A 3FW9A 3TX1A 2VAOA 1AHVA 3BW7A 1WYGA 3FW7A 2I0KA 3EJEB 1N5XA 3W8XA 4DNSA 2PLSA 5G5GB 5K8EA 2VFRA 4PVJA 1SB3B 1E8GA 3HRDC 3ETRB 5AE2A 1DIIA 1HSKA 4HG0A 5FXDA 5I1VA 5FXFA 2R8DA 3PM9A 3KJMA 1W1LA 3FW8A 3DEDA 2Q85A 2W3SA 3S1FA 1N5WC 4PWCA 5L6FA 1ZR6A 2BVFA 2W55A 2NQWA 1ZXIC 2YVSA 5HQXA 2GQUA 1FFVC 3S1CA 3VTEA 4PVKA 3NVZB 1DIQA 3D2HA 2VFVA 3POPA 3S1EA 2W3RA 5AE1A 1N61C 2Y4GA 1N63C 1QLTA 1E8HA 2UUUA 2BVGA 1W1JA 3PQBA 2P3HA 4O95A 3EJDB 1T3QC 3AM9A 2VFTA 1WVEA 2R2ZA 1W1SA 1AHZA 4PWBA 3EUB3 2VFSA 2E3TA 4OALA 2Y3SA 5AWVA 3NVWB 1VDVA 1UXYA 4UD8A 2BVHA 3LLBA 3NRZB 5AE3A 3EJBB 1FO4A 3HSUA 4BC7A 2Y3RA 3W8WA 1FFUC 1RM6B 3NS1B 1AHUA 4ZOHB 3SR6B 3TSHA 3RJAA 3RJ8A 5L6GA 1F0XA 1V97A 1QLUA 4MLAA 1MBBA 3B9JB 3LAEA 3I99A 4JB1A 2Q4WA 1FIQB 2QPMA 1JROA 2MBRA 4PYTA 3AN1A 3C0PA 2IPIA 2AXRA 4BCAA 3GSYA 2QKNA 5HHZA 2PLIA 4PVEA 5FXPA 5G5HB 4PZFA 3S1DA 3DQ0A 4JAYA 2VFUA 2GQTA 4EC3A 4ML8A 1DZNA 1I19A 1W1RA 2EXRA 4PVHA 5D79A 5FXEA 2P13A 1E0YA 1E8FA 1W1MA 1MBTA 2WDWA 3AMZA 3D2JA 1W1KA 4BC9A 5HMRA 2OAIA 1JRPA 3FWAA 3NVYB 5I1WA 2O3GA 2Y08A 5ADZA 1N62C 1WVFA 1W1OA 3JS8A 4BBYA 2RK5A 4XLOA 2UUVA 2P4PA 3W8ZA 1N60C 1W1QA 1VAOA 3NVVB
chains in the Genus database with same CATH topology

3D2DA 3TSJA 2W54A 3FW9A 3TX1A 2VAOA 1AHVA 3BW7A 1WYGA 3FW7A 2I0KA 3W8XA 1N5XA 4DNSA 3HSUA 5G5GB 5K8EA 2VFRA 4PVJA 1SB3B 1E8GA 3HRDC 3ETRB 5AE2A 1DIIA 1HSKA 4HG0A 5FXDA 5I1VA 5FXFA 2R8DA 3PM9A 3KJMA 1W1LA 3FW8A 3DEDA 2Q85A 2W3SA 3S1FA 1N5WC 4PWCA 5L6FA 1ZR6A 2BVFA 2W55A 2NQWA 1ZXIC 2YVSA 5HQXA 2GQUA 1FFVC 3S1CA 3VTEA 4PVKA 3NVZB 1DIQA 3D2HA 2VFVA 3POPA 3S1EA 2W3RA 5AE1A 1N61C 2Y4GA 1N63C 1QLTA 1E8HA 2UUUA 2BVGA 1W1JA 3PQBA 2P3HA 4O95A 1T3QC 3AM9A 2VFTA 1WVEA 2R2ZA 1W1SA 1AHZA 4PWBA 3EUB3 2VFSA 2E3TA 4OALA 2Y3SA 5AWVA 3NVWB 1VDVA 1UXYA 4UD8A 2BVHA 3LLBA 3NRZB 5AE3A 1FO4A 4BC7A 2Y3RA 3W8WA 1FFUC 1RM6B 3NS1B 1AHUA 4ZOHB 3SR6B 3TSHA 3RJAA 3RJ8A 5L6GA 1F0XA 1V97A 1QLUA 4MLAA 1MBBA 3B9JB 3LAEA 3I99A 4JB1A 2Q4WA 1FIQB 3NVVB 2QPMA 1JROA 2MBRA 4PYTA 3AN1A 3C0PA 2IPIA 2AXRA 4BCAA 3GSYA 2QKNA 5HHZA 2PLIA 4PVEA 5FXPA 5G5HB 4PZFA 3S1DA 3DQ0A 4JAYA 2VFUA 2GQTA 4EC3A 4ML8A 1DZNA 1I19A 1W1RA 2EXRA 4PVHA 5D79A 5FXEA 2P13A 1E0YA 1E8FA 1W1MA 1MBTA 2WDWA 3AMZA 3D2JA 1W1KA 4BC9A 5HMRA 2OAIA 1JRPA 3FWAA 3NVYB 5I1WA 2O3GA 2Y08A 5ADZA 1N62C 1WVFA 1W1OA 3JS8A 4BBYA 2RK5A 4XLOA 2UUVA 2P4PA 3W8ZA 1N60C 1W1QA 1VAOA 2PLSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3D2D A;  3TSJ A;  2W54 A;  3FW9 A;  3TX1 A;  2VAO A;  1AHV A;  3BW7 A;  1WYG A;  3FW7 A;  2I0K A;  3W8X A;  1N5X A;  4DNS A;  5G5G B;  5K8E A;  2VFR A;  4PVJ A;  1SB3 B;  1E8G A;  3HRD C;  3ETR B;  5AE2 A;  1DII A;  1HSK A;  4HG0 A;  5FXD A;  5I1V A;  5FXF A;  2R8D A;  3PM9 A;  3KJM A;  1W1L A;  3FW8 A;  3DED A;  2Q85 A;  2W3S A;  3S1F A;  1N5W C;  4PWC A;  5L6F A;  1ZR6 A;  2BVF A;  2W55 A;  2NQW A;  1ZXI C;  2YVS A;  5HQX A;  2GQU A;  1FFV C;  3S1C A;  3VTE A;  4PVK A;  3NVZ B;  1DIQ A;  3D2H A;  2VFV A;  3POP A;  3S1E A;  2W3R A;  5AE1 A;  1N61 C;  2Y4G A;  1N63 C;  1QLT A;  1E8H A;  2BVG A;  1W1J A;  3PQB A;  2P3H A;  4O95 A;  1T3Q C;  3AM9 A;  2VFT A;  1WVE A;  2R2Z A;  1W1S A;  1AHZ A;  4PWB A;  3EUB 3;  2VFS A;  2E3T A;  4OAL A;  2Y3S A;  5AWV A;  3NVW B;  1VDV A;  1UXY A;  4UD8 A;  2BVH A;  3LLB A;  3NRZ B;  5AE3 A;  1FO4 A;  3HSU A;  4BC7 A;  2Y3R A;  3W8W A;  1FFU C;  1RM6 B;  3NS1 B;  1AHU A;  4ZOH B;  3SR6 B;  3TSH A;  3RJA A;  3RJ8 A;  5L6G A;  1F0X A;  1V97 A;  1QLU A;  4MLA A;  1MBB A;  3B9J B;  3LAE A;  3I99 A;  4JB1 A;  2Q4W A;  1FIQ B;  3NVV B;  2QPM A;  1JRO A;  2MBR A;  4PYT A;  3AN1 A;  3C0P A;  2IPI A;  2AXR A;  4BCA A;  3GSY A;  2QKN A;  5HHZ A;  2PLI A;  4PVE A;  5FXP A;  5G5H B;  4PZF A;  3S1D A;  3DQ0 A;  4JAY A;  2VFU A;  2GQT A;  4EC3 A;  4ML8 A;  1DZN A;  1I19 A;  1W1R A;  2EXR A;  4PVH A;  5D79 A;  5FXE A;  2P13 A;  1E0Y A;  1E8F A;  1W1M A;  1MBT A;  2WDW A;  3AMZ A;  3D2J A;  1W1K A;  4BC9 A;  5HMR A;  2OAI A;  1JRP A;  3FWA A;  3NVY B;  5I1W A;  2O3G A;  2Y08 A;  5ADZ A;  1N62 C;  1WVF A;  1W1O A;  3JS8 A;  4BBY A;  2RK5 A;  4XLO A;  2P4P A;  3W8Z A;  1N60 C;  1W1Q A;  1VAO A;  2PLS A; 
#chains in the Genus database with same CATH topology
 3D2D A;  3TSJ A;  2W54 A;  3FW9 A;  3TX1 A;  2VAO A;  1AHV A;  3BW7 A;  1WYG A;  3FW7 A;  2I0K A;  3EJE B;  1N5X A;  3W8X A;  4DNS A;  2PLS A;  5G5G B;  5K8E A;  2VFR A;  4PVJ A;  1SB3 B;  1E8G A;  3HRD C;  3ETR B;  5AE2 A;  1DII A;  1HSK A;  4HG0 A;  5FXD A;  5I1V A;  5FXF A;  2R8D A;  3PM9 A;  3KJM A;  1W1L A;  3FW8 A;  3DED A;  2Q85 A;  2W3S A;  3S1F A;  1N5W C;  4PWC A;  5L6F A;  1ZR6 A;  2BVF A;  2W55 A;  2NQW A;  1ZXI C;  2YVS A;  5HQX A;  2GQU A;  1FFV C;  3S1C A;  3VTE A;  4PVK A;  3NVZ B;  1DIQ A;  3D2H A;  2VFV A;  3POP A;  3S1E A;  2W3R A;  5AE1 A;  1N61 C;  2Y4G A;  1N63 C;  1QLT A;  1E8H A;  2UUU A;  2BVG A;  1W1J A;  3PQB A;  2P3H A;  4O95 A;  3EJD B;  1T3Q C;  3AM9 A;  2VFT A;  1WVE A;  2R2Z A;  1W1S A;  1AHZ A;  4PWB A;  3EUB 3;  2VFS A;  2E3T A;  4OAL A;  2Y3S A;  5AWV A;  3NVW B;  1VDV A;  1UXY A;  4UD8 A;  2BVH A;  3LLB A;  3NRZ B;  5AE3 A;  3EJB B;  1FO4 A;  3HSU A;  4BC7 A;  2Y3R A;  3W8W A;  1FFU C;  1RM6 B;  3NS1 B;  1AHU A;  4ZOH B;  3SR6 B;  3TSH A;  3RJA A;  3RJ8 A;  5L6G A;  1F0X A;  1V97 A;  1QLU A;  4MLA A;  1MBB A;  3B9J B;  3LAE A;  3I99 A;  4JB1 A;  2Q4W A;  1FIQ B;  2QPM A;  1JRO A;  2MBR A;  4PYT A;  3AN1 A;  3C0P A;  2IPI A;  2AXR A;  4BCA A;  3GSY A;  2QKN A;  5HHZ A;  2PLI A;  4PVE A;  5FXP A;  5G5H B;  4PZF A;  3S1D A;  3DQ0 A;  4JAY A;  2VFU A;  2GQT A;  4EC3 A;  4ML8 A;  1DZN A;  1I19 A;  1W1R A;  2EXR A;  4PVH A;  5D79 A;  5FXE A;  2P13 A;  1E0Y A;  1E8F A;  1W1M A;  1MBT A;  2WDW A;  3AMZ A;  3D2J A;  1W1K A;  4BC9 A;  5HMR A;  2OAI A;  1JRP A;  3FWA A;  3NVY B;  5I1W A;  2O3G A;  2Y08 A;  5ADZ A;  1N62 C;  1WVF A;  1W1O A;  3JS8 A;  4BBY A;  2RK5 A;  4XLO A;  2UUV A;  2P4P A;  3W8Z A;  1N60 C;  1W1Q A;  1VAO A;  3NVV B; 
#chains in the Genus database with same CATH homology
 3D2D A;  3TSJ A;  2W54 A;  3FW9 A;  3TX1 A;  2VAO A;  1AHV A;  3BW7 A;  1WYG A;  3FW7 A;  2I0K A;  3W8X A;  1N5X A;  4DNS A;  3HSU A;  5G5G B;  5K8E A;  2VFR A;  4PVJ A;  1SB3 B;  1E8G A;  3HRD C;  3ETR B;  5AE2 A;  1DII A;  1HSK A;  4HG0 A;  5FXD A;  5I1V A;  5FXF A;  2R8D A;  3PM9 A;  3KJM A;  1W1L A;  3FW8 A;  3DED A;  2Q85 A;  2W3S A;  3S1F A;  1N5W C;  4PWC A;  5L6F A;  1ZR6 A;  2BVF A;  2W55 A;  2NQW A;  1ZXI C;  2YVS A;  5HQX A;  2GQU A;  1FFV C;  3S1C A;  3VTE A;  4PVK A;  3NVZ B;  1DIQ A;  3D2H A;  2VFV A;  3POP A;  3S1E A;  2W3R A;  5AE1 A;  1N61 C;  2Y4G A;  1N63 C;  1QLT A;  1E8H A;  2UUU A;  2BVG A;  1W1J A;  3PQB A;  2P3H A;  4O95 A;  1T3Q C;  3AM9 A;  2VFT A;  1WVE A;  2R2Z A;  1W1S A;  1AHZ A;  4PWB A;  3EUB 3;  2VFS A;  2E3T A;  4OAL A;  2Y3S A;  5AWV A;  3NVW B;  1VDV A;  1UXY A;  4UD8 A;  2BVH A;  3LLB A;  3NRZ B;  5AE3 A;  1FO4 A;  4BC7 A;  2Y3R A;  3W8W A;  1FFU C;  1RM6 B;  3NS1 B;  1AHU A;  4ZOH B;  3SR6 B;  3TSH A;  3RJA A;  3RJ8 A;  5L6G A;  1F0X A;  1V97 A;  1QLU A;  4MLA A;  1MBB A;  3B9J B;  3LAE A;  3I99 A;  4JB1 A;  2Q4W A;  1FIQ B;  3NVV B;  2QPM A;  1JRO A;  2MBR A;  4PYT A;  3AN1 A;  3C0P A;  2IPI A;  2AXR A;  4BCA A;  3GSY A;  2QKN A;  5HHZ A;  2PLI A;  4PVE A;  5FXP A;  5G5H B;  4PZF A;  3S1D A;  3DQ0 A;  4JAY A;  2VFU A;  2GQT A;  4EC3 A;  4ML8 A;  1DZN A;  1I19 A;  1W1R A;  2EXR A;  4PVH A;  5D79 A;  5FXE A;  2P13 A;  1E0Y A;  1E8F A;  1W1M A;  1MBT A;  2WDW A;  3AMZ A;  3D2J A;  1W1K A;  4BC9 A;  5HMR A;  2OAI A;  1JRP A;  3FWA A;  3NVY B;  5I1W A;  2O3G A;  2Y08 A;  5ADZ A;  1N62 C;  1WVF A;  1W1O A;  3JS8 A;  4BBY A;  2RK5 A;  4XLO A;  2UUV A;  2P4P A;  3W8Z A;  1N60 C;  1W1Q A;  1VAO A;  2PLS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4XLOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations