The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
167
|
sequence length |
503
|
structure length |
498
|
Chain Sequence |
HEDFLKCLSYTVEPKVIHTSKDSSFFSILDSSIQNPRFSVSETPKPVSIITPVKASDVQTVIRCAQLHGIHVRTRSAGHCYEGLSYIAYNKPFAVIDLRNLRSISLDVDNRTGWVQTGATAGELYYEIGKTTKSLAFPAGIHPTVGVGGQFSGGGYGTLLRKYGLAADNIIDALVVDASGRILDRQAMGEDYFWAIRGGGGSSFGVILSWKVKLVDVPSTITVFKVQKTSKKEAVRIIKKWQYAADKVPDDLFIRTTLERSNKNAVHALFTGLYIGPVNNLLALMEEKFPELGLEKEGCEEMSWIESVLWFADFPKGESLGVLTNRERTSLSFKGKDDFVQEPIPEAAIQEIWRRLEAPEARLGKIILTPFGGKMSEMAEYETPFPHRGGNLYEIQYVAYWREEEDKNKTETDKYLKWVDSVYEFMTPYVSKSPRGAYVNFKDMDLGMYLGKKKTKYEEGKSWGVKYFKNNFERLVRVKTRVDPTDFFCDEQSIPLVN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.
pubmed doi rcsb |
| molecule keywords |
Berberine bridge enzyme-like protein
|
| molecule tags |
Oxidoreductase
|
| source organism |
Arabidopsis thaliana
|
| total genus |
167
|
| structure length |
498
|
| sequence length |
503
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2015-08-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01565 | FAD_binding_4 | FAD binding domain |
| A | PF08031 | BBE | Berberine and berberine like |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | ||
| Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Vanillyl-alcohol Oxidase; Chain A, domain 3 | Vanillyl-alcohol Oxidase; Chain A, domain 3 |
#chains in the Genus database with same CATH superfamily 3D2D A; 3EUB 3; 4ML8 A; 1DZN A; 1T3Q C; 4PYT A; 4PVE A; 3C0P A; 3TX1 A; 1DIQ A; 2VFU A; 2W55 A; 4OAL A; 1E8G A; 5AWV A; 1N63 C; 4PVH A; 3B9J B; 2BVG A; 3S1D A; 2Y08 A; 1W1R A; 2I0K A; 2QPM A; 5HMR A; 1QLU A; 5FXP A; 1WVE A; 4DNS A; 1N60 C; 4PZF A; 3I99 A; 2Q85 A; 1W1O A; 3HSU A; 1VAO A; 1WVF A; 2WDW A; 2Y3S A; 3POP A; 1N62 C; 1VDV A; 3KJM A; 1N61 C; 2E3T A; 2W54 A; 1QLT A; 3FW9 A; 1ZR6 A; 3PM9 A; 3FW8 A; 2AXR A; 2Y3R A; 2GQT A; 5D79 A; 3FW7 A; 1DII A; 4PVK A; 3PQB A; 2MBR A; 3D2J A; 4BC7 A; 5AE1 A; 1W1J A; 3DQ0 A; 2GQU A; 1W1K A; 2W3R A; 1JRO A; 1W1M A; 3ETR B; 2Y4G A; 1ZXI C; 5FXE A; 1FFU C; 1FIQ B; 3W8X A; 4PWC A; 4MLA A; 3TSH A; 4ZOH B; 3RJ8 A; 4EC3 A; 4JAY A; 4PWB A; 1MBT A; 1N5W C; 1W1Q A; 1W1S A; 2Q4W A; 3TSJ A; 3RJA A; 3BW7 A; 4JB1 A; 3JS8 A; 3S1C A; 3SR6 B; 1E0Y A; 4UD8 A; 2VAO A; 3VTE A; 3AM9 A; 1UXY A; 2BVH A; 2VFR A; 1WYG A; 4O95 A; 5K8E A; 4BBY A; 5I1V A; 1W1L A; 4BCA A; 1E8H A; 2VFT A; 1E8F A; 1HSK A; 5FXD A; 3D2H A; 5HHZ A; 5I1W A; 4BC9 A; 1I19 A; 2VFV A; 2IPI A; 3S1F A; 1N5X A; 2VFS A; 1FFV C; 5HQX A; 5AE2 A; 3AN1 A; 1AHV A; 3NRZ B; 3AMZ A; 4PVJ A; 5ADZ A; 3W8Z A; 1F0X A; 2BVF A; 3GSY A; 3NS1 B; 4XLO A; 1FO4 A; 1MBB A; 5L6G A; 1AHU A; 3W8W A; 3FWA A; 2W3S A; 2EXR A; 1AHZ A; 2QKN A; 5L6F A; 3NVZ B; 3S1E A; 5FXF A; 1V97 A; 5AE3 A; #chains in the Genus database with same CATH topology 3D2D A; 3EUB 3; 4ML8 A; 1DZN A; 5G5G B; 1T3Q C; 4PYT A; 4PVE A; 3C0P A; 3TX1 A; 2P3H A; 1DIQ A; 2VFU A; 2W55 A; 3EJB B; 2P13 A; 4OAL A; 1E8G A; 5AWV A; 1N63 C; 4PVH A; 3B9J B; 2BVG A; 3S1D A; 2Y08 A; 1W1R A; 2I0K A; 2QPM A; 5HMR A; 1QLU A; 3NVY B; 5FXP A; 1WVE A; 4DNS A; 2OAI A; 1N60 C; 4PZF A; 3I99 A; 2Q85 A; 1W1O A; 2P4P A; 3HSU A; 1VAO A; 1WVF A; 2WDW A; 1RM6 B; 2Y3S A; 3POP A; 1N62 C; 1VDV A; 4HG0 A; 3KJM A; 2RK5 A; 1N61 C; 2E3T A; 2PLI A; 2W54 A; 1QLT A; 3FW9 A; 1ZR6 A; 2R8D A; 3PM9 A; 3FW8 A; 2AXR A; 3EJE B; 2Y3R A; 2GQT A; 5D79 A; 3FW7 A; 2UUV A; 1DII A; 4PVK A; 3PQB A; 2MBR A; 3D2J A; 4BC7 A; 5AE1 A; 1W1J A; 3DQ0 A; 2GQU A; 1W1K A; 2W3R A; 1JRO A; 1W1M A; 3ETR B; 2NQW A; 2Y4G A; 1ZXI C; 3DED A; 5FXE A; 1FFU C; 1FIQ B; 3W8X A; 4PWC A; 4MLA A; 3TSH A; 3NVV B; 4ZOH B; 2PLS A; 3LAE A; 3RJ8 A; 4EC3 A; 4JAY A; 4PWB A; 1MBT A; 1N5W C; 1W1Q A; 2YVS A; 1W1S A; 2Q4W A; 3TSJ A; 3RJA A; 3BW7 A; 3NVW B; 4JB1 A; 3JS8 A; 3S1C A; 3SR6 B; 1E0Y A; 4UD8 A; 2VAO A; 3VTE A; 3AM9 A; 1UXY A; 2BVH A; 2VFR A; 1WYG A; 4O95 A; 5K8E A; 4BBY A; 5I1V A; 1W1L A; 4BCA A; 1E8H A; 2VFT A; 1E8F A; 1HSK A; 5FXD A; 3D2H A; 2R2Z A; 5HHZ A; 5I1W A; 4BC9 A; 1I19 A; 2VFV A; 2IPI A; 3S1F A; 5G5H B; 1N5X A; 2VFS A; 1FFV C; 5HQX A; 5AE2 A; 3AN1 A; 1AHV A; 3NRZ B; 2O3G A; 3AMZ A; 4PVJ A; 5ADZ A; 3W8Z A; 2UUU A; 1F0X A; 2BVF A; 3GSY A; 3NS1 B; 3EJD B; 4XLO A; 1FO4 A; 1MBB A; 5L6G A; 1AHU A; 3W8W A; 3HRD C; 3FWA A; 1JRP A; 2W3S A; 2EXR A; 1AHZ A; 2QKN A; 5L6F A; 1SB3 B; 3NVZ B; 3S1E A; 5FXF A; 3LLB A; 1V97 A; 5AE3 A; #chains in the Genus database with same CATH homology 3D2D A; 3EUB 3; 4ML8 A; 1DZN A; 5G5G B; 1T3Q C; 4PYT A; 4PVE A; 3C0P A; 3TX1 A; 2P3H A; 1DIQ A; 2VFU A; 2W55 A; 2P13 A; 4OAL A; 1E8G A; 5AWV A; 1N63 C; 4PVH A; 3B9J B; 2BVG A; 3S1D A; 2Y08 A; 1W1R A; 2I0K A; 2QPM A; 5HMR A; 1QLU A; 5FXP A; 3NVY B; 1WVE A; 4DNS A; 2OAI A; 1N60 C; 4PZF A; 3I99 A; 2Q85 A; 1W1O A; 2P4P A; 3HSU A; 1VAO A; 1WVF A; 2WDW A; 1RM6 B; 2Y3S A; 3POP A; 1N62 C; 1VDV A; 4HG0 A; 3KJM A; 2RK5 A; 1N61 C; 2E3T A; 2PLI A; 2W54 A; 1QLT A; 3FW9 A; 1ZR6 A; 2R8D A; 3PM9 A; 3FW8 A; 2AXR A; 2Y3R A; 2GQT A; 5D79 A; 3FW7 A; 2UUV A; 1DII A; 4PVK A; 3PQB A; 2MBR A; 3D2J A; 4BC7 A; 5AE1 A; 1W1J A; 3DQ0 A; 2GQU A; 1W1K A; 2W3R A; 1JRO A; 1W1M A; 3ETR B; 2NQW A; 2Y4G A; 1ZXI C; 3DED A; 5FXE A; 1FFU C; 1FIQ B; 3W8X A; 4PWC A; 4MLA A; 3TSH A; 4ZOH B; 3NVV B; 2PLS A; 3LAE A; 3RJ8 A; 4EC3 A; 4JAY A; 4PWB A; 1MBT A; 1N5W C; 1W1Q A; 2YVS A; 1W1S A; 2Q4W A; 3TSJ A; 3RJA A; 3BW7 A; 3NVW B; 4JB1 A; 3JS8 A; 3S1C A; 3SR6 B; 1E0Y A; 4UD8 A; 2VAO A; 3VTE A; 3AM9 A; 1UXY A; 2BVH A; 2VFR A; 1WYG A; 4O95 A; 5K8E A; 4BBY A; 5I1V A; 1W1L A; 4BCA A; 1E8H A; 2VFT A; 1E8F A; 1HSK A; 5FXD A; 3D2H A; 2R2Z A; 5HHZ A; 5I1W A; 4BC9 A; 1I19 A; 2VFV A; 2IPI A; 3S1F A; 5G5H B; 1N5X A; 2VFS A; 1FFV C; 5HQX A; 5AE2 A; 3AN1 A; 1AHV A; 3NRZ B; 2O3G A; 3AMZ A; 4PVJ A; 5ADZ A; 3W8Z A; 2UUU A; 1F0X A; 2BVF A; 3GSY A; 3NS1 B; 4XLO A; 1FO4 A; 1MBB A; 5L6G A; 1AHU A; 3W8W A; 3HRD C; 3FWA A; 1JRP A; 2W3S A; 2EXR A; 1AHZ A; 2QKN A; 5L6F A; 1SB3 B; 3NVZ B; 3S1E A; 5FXF A; 3LLB A; 1V97 A; 5AE3 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
