5K8EA

Xylooligosaccharide oxidase from myceliophthora thermophila c1
Total Genus 151
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule keywords FAD linked oxidase-like protein
total genus 151
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5k8eA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5k8eA02
2IPIA 1ZR6A 3RJAA 4PVHA 3FWAA 4DNSA 5L6FA 4PZFA 2BVHA 3VTEA 3D2JA 3W8XA 4PWCA 3W8WA 3RJ8A 2Y3RA 3D2DA 2WDWA 2BVGA 4PVKA 4XLOA 5D79A 3GSYA 3TSHA 5L6GA 2UUUA 3FW7A 3TSJA 3POPA 3PQBA 2Y3SA 3D2HA 2Y4GA 3FW8A 3HSUA 5I1VA 4PVEA 3W8ZA 2Y08A 2AXRA 4UD8A 2UUVA 4PWBA 3FW9A 4EC3A 5AWVA 5I1WA 2BVFA 5K8EA 4PVJA
chains in the Genus database with same CATH superfamily
1W1JA 1AHZA 3B9JB 3TX1A 4PVHA 4BCAA 3S1FA 3AM9A 3JS8A 1WYGA 1FFVC 1WVFA 4PZFA 2EXRA 1V97A 2W55A 2RK5A 3DEDA 1DZNA 1VAOA 3RJ8A 1WVEA 5AE3A 1W1MA 3LLBA 2WDWA 4PVKA 5D79A 4BC9A 1E0YA 1N62C 3POPA 1E8GA 1FIQB 1QLTA 1QLUA 3HRDC 3W8ZA 2PLSA 2AXRA 4UD8A 2QPMA 2UUVA 4EC3A 3FW9A 1DIQA 3DQ0A 5AE2A 5I1WA 2I0KA 5HMRA 1W1QA 1ZR6A 3NVWB 1N61C 1MBBA 4DNSA 3BW7A 5L6FA 5HQXA 3W8XA 1UXYA 3W8WA 1JROA 2VFUA 2VFVA 2YVSA 3I99A 5ADZA 2Y3RA 3ETRB 3D2DA 2PLIA 4BBYA 3TSHA 1FO4A 3S1EA 1MBTA 2UUUA 3FW7A 4MLAA 2W54A 1FFUC 4ZOHB 1ZXIC 2W3SA 5FXPA 3HSUA 5I1VA 2GQUA 2O3GA 1RM6B 1N5XA 1W1RA 1SB3B 3AN1A 3EUB3 4PVJA 3NVZB 4BC7A 1W1LA 2E3TA 3FWAA 3NS1B 2BVHA 2VAOA 3NRZB 3VTEA 2P4PA 5FXDA 4JB1A 2GQTA 2Q4WA 4HG0A 1E8HA 4XLOA 3GSYA 5G5HB 1F0XA 1W1OA 3TSJA 1JRPA 1VDVA 2R2ZA 4OALA 3S1DA 3S1CA 3D2HA 3FW8A 2Y4GA 1HSKA 1N60C 1W1KA 4PVEA 5FXEA 2Y08A 3NVYB 1DIIA 1I19A 2W3RA 3NVVB 4PWBA 5AWVA 1T3QC 2VFTA 2BVGA 2IPIA 5FXFA 2VFRA 3C0PA 3RJAA 3AMZA 1E8FA 1AHUA 2MBRA 2P13A 3LAEA 1N63C 3PM9A 3KJMA 3D2JA 2R8DA 4PWCA 5G5GB 1W1SA 5HHZA 2NQWA 2OAIA 5L6GA 4PYTA 4JAYA 4ML8A 3PQBA 5AE1A 2Y3SA 1AHVA 3SR6B 1N5WC 2VFSA 2P3HA 4O95A 2BVFA 5K8EA 2QKNA 2Q85A
chains in the Genus database with same CATH topology
1W1JA 1AHZA 3B9JB 3TX1A 4PVHA 4BCAA 3S1FA 3AM9A 3JS8A 1WYGA 1FFVC 1WVFA 4PZFA 2EXRA 1V97A 2W55A 2RK5A 3DEDA 1DZNA 1VAOA 3RJ8A 1WVEA 5AE3A 1W1MA 3LLBA 2WDWA 4PVKA 5D79A 4BC9A 1E0YA 1N62C 3POPA 1E8GA 1FIQB 1QLTA 1QLUA 3HRDC 3W8ZA 2PLSA 2AXRA 4UD8A 2QPMA 2UUVA 4EC3A 3FW9A 1DIQA 3DQ0A 5AE2A 5I1WA 2I0KA 5HMRA 1W1QA 1ZR6A 3NVWB 1N61C 1MBBA 4DNSA 3BW7A 5L6FA 5HQXA 3W8XA 1UXYA 3W8WA 1JROA 2VFUA 2VFVA 2YVSA 3I99A 5ADZA 2Y3RA 3ETRB 3D2DA 2PLIA 4BBYA 3TSHA 1FO4A 3S1EA 1MBTA 2UUUA 3FW7A 4MLAA 2W54A 1FFUC 4ZOHB 1ZXIC 2W3SA 5FXPA 3HSUA 5I1VA 2GQUA 2O3GA 1RM6B 1N5XA 1W1RA 1SB3B 3AN1A 3EUB3 4PVJA 3NVZB 4BC7A 1W1LA 2E3TA 3FWAA 3NS1B 2BVHA 2VAOA 3NRZB 3VTEA 2P4PA 5FXDA 4JB1A 2GQTA 2Q4WA 4HG0A 1E8HA 4XLOA 3GSYA 5G5HB 1F0XA 1W1OA 3TSJA 1JRPA 1VDVA 2R2ZA 4OALA 3S1DA 3S1CA 3D2HA 3FW8A 2Y4GA 1HSKA 1N60C 1W1KA 4PVEA 5FXEA 2Y08A 3NVYB 1DIIA 1I19A 2W3RA 3NVVB 4PWBA 5AWVA 1T3QC 2VFTA 2BVGA 2IPIA 5FXFA 2VFRA 3C0PA 3RJAA 3AMZA 1E8FA 1AHUA 2MBRA 2P13A 3LAEA 1N63C 3PM9A 3KJMA 3D2JA 2R8DA 4PWCA 5G5GB 1W1SA 5HHZA 2NQWA 2OAIA 5L6GA 4PYTA 4JAYA 4ML8A 3PQBA 5AE1A 2Y3SA 1AHVA 3SR6B 1N5WC 2VFSA 2P3HA 4O95A 2BVFA 5K8EA 2QKNA 2Q85A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IPI A;  1ZR6 A;  3RJA A;  4PVH A;  3FWA A;  4DNS A;  5L6F A;  4PZF A;  2BVH A;  3VTE A;  3D2J A;  3W8X A;  4PWC A;  3W8W A;  3RJ8 A;  2Y3R A;  3D2D A;  2WDW A;  2BVG A;  4PVK A;  4XLO A;  5D79 A;  3GSY A;  3TSH A;  5L6G A;  2UUU A;  3FW7 A;  3TSJ A;  3POP A;  3PQB A;  2Y3S A;  3D2H A;  2Y4G A;  3FW8 A;  3HSU A;  5I1V A;  4PVE A;  3W8Z A;  2Y08 A;  2AXR A;  4UD8 A;  2UUV A;  4PWB A;  3FW9 A;  4EC3 A;  5AWV A;  5I1W A;  2BVF A;  5K8E A;  4PVJ A; 
#chains in the Genus database with same CATH topology
 1W1J A;  1AHZ A;  3B9J B;  3TX1 A;  4PVH A;  4BCA A;  3S1F A;  3AM9 A;  3JS8 A;  1WYG A;  1FFV C;  1WVF A;  4PZF A;  2EXR A;  1V97 A;  2W55 A;  2RK5 A;  3DED A;  1DZN A;  1VAO A;  3RJ8 A;  1WVE A;  5AE3 A;  1W1M A;  3LLB A;  2WDW A;  4PVK A;  5D79 A;  4BC9 A;  1E0Y A;  1N62 C;  3POP A;  1E8G A;  1FIQ B;  1QLT A;  1QLU A;  3HRD C;  3W8Z A;  2PLS A;  2AXR A;  4UD8 A;  2QPM A;  2UUV A;  4EC3 A;  3FW9 A;  1DIQ A;  3DQ0 A;  5AE2 A;  5I1W A;  2I0K A;  5HMR A;  1W1Q A;  1ZR6 A;  3NVW B;  1N61 C;  1MBB A;  4DNS A;  3BW7 A;  5L6F A;  5HQX A;  3W8X A;  1UXY A;  3W8W A;  1JRO A;  2VFU A;  2VFV A;  2YVS A;  3I99 A;  5ADZ A;  2Y3R A;  3ETR B;  3D2D A;  2PLI A;  4BBY A;  3TSH A;  1FO4 A;  3S1E A;  1MBT A;  2UUU A;  3FW7 A;  4MLA A;  2W54 A;  1FFU C;  4ZOH B;  1ZXI C;  2W3S A;  5FXP A;  3HSU A;  5I1V A;  2GQU A;  2O3G A;  1RM6 B;  1N5X A;  1W1R A;  1SB3 B;  3AN1 A;  3EUB 3;  4PVJ A;  3NVZ B;  4BC7 A;  1W1L A;  2E3T A;  3FWA A;  3NS1 B;  2BVH A;  2VAO A;  3NRZ B;  3VTE A;  2P4P A;  5FXD A;  4JB1 A;  2GQT A;  2Q4W A;  4HG0 A;  1E8H A;  4XLO A;  3GSY A;  5G5H B;  1F0X A;  1W1O A;  3TSJ A;  1JRP A;  1VDV A;  2R2Z A;  4OAL A;  3S1D A;  3S1C A;  3D2H A;  3FW8 A;  2Y4G A;  1HSK A;  1N60 C;  1W1K A;  4PVE A;  5FXE A;  2Y08 A;  3NVY B;  1DII A;  1I19 A;  2W3R A;  3NVV B;  4PWB A;  5AWV A;  1T3Q C;  2VFT A;  2BVG A;  2IPI A;  5FXF A;  2VFR A;  3C0P A;  3RJA A;  3AMZ A;  1E8F A;  1AHU A;  2MBR A;  2P13 A;  3LAE A;  1N63 C;  3PM9 A;  3KJM A;  3D2J A;  2R8D A;  4PWC A;  5G5G B;  1W1S A;  5HHZ A;  2NQW A;  2OAI A;  5L6G A;  4PYT A;  4JAY A;  4ML8 A;  3PQB A;  5AE1 A;  2Y3S A;  1AHV A;  3SR6 B;  1N5W C;  2VFS A;  2P3H A;  4O95 A;  2BVF A;  5K8E A;  2QKN A;  2Q85 A; 
#chains in the Genus database with same CATH homology
 1W1J A;  1AHZ A;  3B9J B;  3TX1 A;  4PVH A;  4BCA A;  3S1F A;  3AM9 A;  3JS8 A;  1WYG A;  1FFV C;  1WVF A;  4PZF A;  2EXR A;  1V97 A;  2W55 A;  2RK5 A;  3DED A;  1DZN A;  1VAO A;  3RJ8 A;  1WVE A;  5AE3 A;  1W1M A;  3LLB A;  2WDW A;  4PVK A;  5D79 A;  4BC9 A;  1E0Y A;  1N62 C;  3POP A;  1E8G A;  1FIQ B;  1QLT A;  1QLU A;  3HRD C;  3W8Z A;  2PLS A;  2AXR A;  4UD8 A;  2QPM A;  2UUV A;  4EC3 A;  3FW9 A;  1DIQ A;  3DQ0 A;  5AE2 A;  5I1W A;  2I0K A;  5HMR A;  1W1Q A;  1ZR6 A;  3NVW B;  1N61 C;  1MBB A;  4DNS A;  3BW7 A;  5L6F A;  5HQX A;  3W8X A;  1UXY A;  3W8W A;  1JRO A;  2VFU A;  2VFV A;  2YVS A;  3I99 A;  5ADZ A;  2Y3R A;  3ETR B;  3D2D A;  2PLI A;  4BBY A;  3TSH A;  1FO4 A;  3S1E A;  1MBT A;  2UUU A;  3FW7 A;  4MLA A;  2W54 A;  1FFU C;  4ZOH B;  1ZXI C;  2W3S A;  5FXP A;  3HSU A;  5I1V A;  2GQU A;  2O3G A;  1RM6 B;  1N5X A;  1W1R A;  1SB3 B;  3AN1 A;  3EUB 3;  4PVJ A;  3NVZ B;  4BC7 A;  1W1L A;  2E3T A;  3FWA A;  3NS1 B;  2BVH A;  2VAO A;  3NRZ B;  3VTE A;  2P4P A;  5FXD A;  4JB1 A;  2GQT A;  2Q4W A;  4HG0 A;  1E8H A;  4XLO A;  3GSY A;  5G5H B;  1F0X A;  1W1O A;  3TSJ A;  1JRP A;  1VDV A;  2R2Z A;  4OAL A;  3S1D A;  3S1C A;  3D2H A;  3FW8 A;  2Y4G A;  1HSK A;  1N60 C;  1W1K A;  4PVE A;  5FXE A;  2Y08 A;  3NVY B;  1DII A;  1I19 A;  2W3R A;  3NVV B;  4PWB A;  5AWV A;  1T3Q C;  2VFT A;  2BVG A;  2IPI A;  5FXF A;  2VFR A;  3C0P A;  3RJA A;  3AMZ A;  1E8F A;  1AHU A;  2MBR A;  2P13 A;  3LAE A;  1N63 C;  3PM9 A;  3KJM A;  3D2J A;  2R8D A;  4PWC A;  5G5G B;  1W1S A;  5HHZ A;  2NQW A;  2OAI A;  5L6G A;  4PYT A;  4JAY A;  4ML8 A;  3PQB A;  5AE1 A;  2Y3S A;  1AHV A;  3SR6 B;  1N5W C;  2VFS A;  2P3H A;  4O95 A;  2BVF A;  5K8E A;  2QKN A;  2Q85 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...