5L6FA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylobiose
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule keywords FAD linked oxidase-like protein
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6fA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6fA02
2UUVA 3TSJA 3W8XA 1ZR6A 3D2JA 3W8ZA 2WDWA 3HSUA 3W8WA 3PQBA 4PVKA 5I1WA 5K8EA 4PVJA 4PVHA 3FW7A 4XLOA 3D2HA 3TSHA 4EC3A 3RJAA 4PZFA 3FWAA 4PWBA 4UD8A 2Y3SA 4PVEA 3FW9A 3GSYA 5L6GA 2BVGA 2IPIA 3FW8A 2BVFA 2BVHA 2Y3RA 5L6FA 3POPA 5I1VA 2AXRA 2UUUA 4PWCA 2Y4GA 5D79A 3VTEA 4DNSA 3D2DA 2Y08A 5AWVA 3RJ8A
chains in the Genus database with same CATH superfamily
1N61C 3NVZB 1FFUC 2VFRA 4ML8A 4O95A 1WVEA 3JS8A 2Q85A 2YVSA 2VFTA 1DZNA 3AN1A 4EC3A 2VFVA 1UXYA 1E8FA 3NVVB 3NVWB 1N5WC 3GSYA 1I19A 2BVGA 2PLIA 2IPIA 3C0PA 5AE1A 1W1QA 4OALA 3S1FA 1E8GA 1DIQA 3TX1A 3POPA 1N62C 5I1VA 2P13A 1W1RA 1W1MA 5AE3A 2R8DA 1QLTA 2Y08A 3ETRB 4HG0A 2P3HA 5FXDA 4BC7A 3W8XA 1ZR6A 3NS1B 5FXPA 1MBTA 2P4PA 3W8WA 1QLUA 3PQBA 1F0XA 3BW7A 4ZOHB 1AHVA 1MBBA 1FIQB 3FW7A 3I99A 1W1SA 1VAOA 2VFUA 1E0YA 3AM9A 2W3RA 3LAEA 2EXRA 5L6GA 3SR6B 3FW8A 5AE2A 1ZXIC 5G5GB 2Y3RA 5L6FA 2AXRA 2UUUA 2Y4GA 2E3TA 2QPMA 5ADZA 1T3QC 5AWVA 3RJ8A 2O3GA 5HHZA 3TSJA 1SB3B 3S1CA 2WDWA 2R2ZA 3HSUA 1JROA 1N5XA 2RK5A 4BC9A 5FXFA 2VAOA 4PVHA 4PVJA 5K8EA 5FXEA 2W55A 4XLOA 1FFVC 1W1JA 5HQXA 4PZFA 4PWBA 2MBRA 3NVYB 1N63C 2GQTA 4PVEA 1WYGA 3FW9A 3NRZB 1N60C 1E8HA 3KJMA 5HMRA 2BVFA 1RM6B 2BVHA 1HSKA 4BBYA 4JAYA 2QKNA 3B9JB 3PM9A 4BCAA 3VTEA 3D2DA 3FWAA 3EUB3 2UUVA 3S1EA 3D2JA 3W8ZA 4PYTA 1W1KA 4PVKA 2W54A 2GQUA 5G5HB 5I1WA 3AMZA 3S1DA 1WVFA 1JRPA 3D2HA 3TSHA 3RJAA 4UD8A 2Y3SA 2Q4WA 3DEDA 2OAIA 1DIIA 2NQWA 1FO4A 1AHUA 1W1OA 4MLAA 2VFSA 4JB1A 1W1LA 2PLSA 1AHZA 3DQ0A 4PWCA 3LLBA 2I0KA 5D79A 1VDVA 1V97A 4DNSA 2W3SA 3HRDC
chains in the Genus database with same CATH topology
1N61C 3NVZB 1FFUC 2VFRA 4ML8A 4O95A 1WVEA 3JS8A 2Q85A 2YVSA 2VFTA 1DZNA 3AN1A 4EC3A 2VFVA 1UXYA 1E8FA 3NVVB 3NVWB 1N5WC 3GSYA 1I19A 2BVGA 2PLIA 2IPIA 3C0PA 5AE1A 1W1QA 4OALA 3S1FA 1E8GA 1DIQA 3TX1A 3POPA 1N62C 5I1VA 2P13A 1W1RA 1W1MA 5AE3A 2R8DA 1QLTA 2Y08A 3ETRB 4HG0A 2P3HA 5FXDA 4BC7A 3W8XA 1ZR6A 3NS1B 5FXPA 1MBTA 2P4PA 3W8WA 1QLUA 3PQBA 1F0XA 3BW7A 4ZOHB 1AHVA 1MBBA 1FIQB 3FW7A 3I99A 1W1SA 1VAOA 2VFUA 1E0YA 3AM9A 2W3RA 3LAEA 2EXRA 5L6GA 3SR6B 3FW8A 5AE2A 1ZXIC 5G5GB 2Y3RA 5L6FA 2AXRA 2UUUA 2Y4GA 2E3TA 2QPMA 5ADZA 1T3QC 5AWVA 3RJ8A 2O3GA 5HHZA 3TSJA 1SB3B 3S1CA 2WDWA 2R2ZA 3HSUA 1JROA 1N5XA 2RK5A 4BC9A 5FXFA 2VAOA 4PVHA 4PVJA 5K8EA 5FXEA 2W55A 4XLOA 1FFVC 1W1JA 5HQXA 4PZFA 4PWBA 2MBRA 3NVYB 1N63C 2GQTA 4PVEA 1WYGA 3FW9A 3NRZB 1N60C 1E8HA 3KJMA 5HMRA 2BVFA 1RM6B 2BVHA 1HSKA 4BBYA 4JAYA 2QKNA 3B9JB 3PM9A 4BCAA 3VTEA 3D2DA 3FWAA 3EUB3 2UUVA 3S1EA 3D2JA 3W8ZA 4PYTA 1W1KA 4PVKA 2W54A 2GQUA 5G5HB 5I1WA 3AMZA 3S1DA 1WVFA 1JRPA 3D2HA 3TSHA 3RJAA 4UD8A 2Y3SA 2Q4WA 3DEDA 2OAIA 1DIIA 2NQWA 1FO4A 1AHUA 1W1OA 4MLAA 2VFSA 4JB1A 1W1LA 2PLSA 1AHZA 3DQ0A 4PWCA 3LLBA 2I0KA 5D79A 1VDVA 1V97A 4DNSA 2W3SA 3HRDC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2UUV A;  3TSJ A;  3W8X A;  1ZR6 A;  3D2J A;  3W8Z A;  2WDW A;  3HSU A;  3W8W A;  3PQB A;  4PVK A;  5I1W A;  5K8E A;  4PVJ A;  4PVH A;  3FW7 A;  4XLO A;  3D2H A;  3TSH A;  4EC3 A;  3RJA A;  4PZF A;  3FWA A;  4PWB A;  4UD8 A;  2Y3S A;  4PVE A;  3FW9 A;  3GSY A;  5L6G A;  2BVG A;  2IPI A;  3FW8 A;  2BVF A;  2BVH A;  2Y3R A;  5L6F A;  3POP A;  5I1V A;  2AXR A;  2UUU A;  4PWC A;  2Y4G A;  5D79 A;  3VTE A;  4DNS A;  3D2D A;  2Y08 A;  5AWV A;  3RJ8 A; 
#chains in the Genus database with same CATH topology
 1N61 C;  3NVZ B;  1FFU C;  2VFR A;  4ML8 A;  4O95 A;  1WVE A;  3JS8 A;  2Q85 A;  2YVS A;  2VFT A;  1DZN A;  3AN1 A;  4EC3 A;  2VFV A;  1UXY A;  1E8F A;  3NVV B;  3NVW B;  1N5W C;  3GSY A;  1I19 A;  2BVG A;  2PLI A;  2IPI A;  3C0P A;  5AE1 A;  1W1Q A;  4OAL A;  3S1F A;  1E8G A;  1DIQ A;  3TX1 A;  3POP A;  1N62 C;  5I1V A;  2P13 A;  1W1R A;  1W1M A;  5AE3 A;  2R8D A;  1QLT A;  2Y08 A;  3ETR B;  4HG0 A;  2P3H A;  5FXD A;  4BC7 A;  3W8X A;  1ZR6 A;  3NS1 B;  5FXP A;  1MBT A;  2P4P A;  3W8W A;  1QLU A;  3PQB A;  1F0X A;  3BW7 A;  4ZOH B;  1AHV A;  1MBB A;  1FIQ B;  3FW7 A;  3I99 A;  1W1S A;  1VAO A;  2VFU A;  1E0Y A;  3AM9 A;  2W3R A;  3LAE A;  2EXR A;  5L6G A;  3SR6 B;  3FW8 A;  5AE2 A;  1ZXI C;  5G5G B;  2Y3R A;  5L6F A;  2AXR A;  2UUU A;  2Y4G A;  2E3T A;  2QPM A;  5ADZ A;  1T3Q C;  5AWV A;  3RJ8 A;  2O3G A;  5HHZ A;  3TSJ A;  1SB3 B;  3S1C A;  2WDW A;  2R2Z A;  3HSU A;  1JRO A;  1N5X A;  2RK5 A;  4BC9 A;  5FXF A;  2VAO A;  4PVH A;  4PVJ A;  5K8E A;  5FXE A;  2W55 A;  4XLO A;  1FFV C;  1W1J A;  5HQX A;  4PZF A;  4PWB A;  2MBR A;  3NVY B;  1N63 C;  2GQT A;  4PVE A;  1WYG A;  3FW9 A;  3NRZ B;  1N60 C;  1E8H A;  3KJM A;  5HMR A;  2BVF A;  1RM6 B;  2BVH A;  1HSK A;  4BBY A;  4JAY A;  2QKN A;  3B9J B;  3PM9 A;  4BCA A;  3VTE A;  3D2D A;  3FWA A;  3EUB 3;  2UUV A;  3S1E A;  3D2J A;  3W8Z A;  4PYT A;  1W1K A;  4PVK A;  2W54 A;  2GQU A;  5G5H B;  5I1W A;  3AMZ A;  3S1D A;  1WVF A;  1JRP A;  3D2H A;  3TSH A;  3RJA A;  4UD8 A;  2Y3S A;  2Q4W A;  3DED A;  2OAI A;  1DII A;  2NQW A;  1FO4 A;  1AHU A;  1W1O A;  4MLA A;  2VFS A;  4JB1 A;  1W1L A;  2PLS A;  1AHZ A;  3DQ0 A;  4PWC A;  3LLB A;  2I0K A;  5D79 A;  1VDV A;  1V97 A;  4DNS A;  2W3S A;  3HRD C; 
#chains in the Genus database with same CATH homology
 1N61 C;  3NVZ B;  1FFU C;  2VFR A;  4ML8 A;  4O95 A;  1WVE A;  3JS8 A;  2Q85 A;  2YVS A;  2VFT A;  1DZN A;  3AN1 A;  4EC3 A;  2VFV A;  1UXY A;  1E8F A;  3NVV B;  3NVW B;  1N5W C;  3GSY A;  1I19 A;  2BVG A;  2PLI A;  2IPI A;  3C0P A;  5AE1 A;  1W1Q A;  4OAL A;  3S1F A;  1E8G A;  1DIQ A;  3TX1 A;  3POP A;  1N62 C;  5I1V A;  2P13 A;  1W1R A;  1W1M A;  5AE3 A;  2R8D A;  1QLT A;  2Y08 A;  3ETR B;  4HG0 A;  2P3H A;  5FXD A;  4BC7 A;  3W8X A;  1ZR6 A;  3NS1 B;  5FXP A;  1MBT A;  2P4P A;  3W8W A;  1QLU A;  3PQB A;  1F0X A;  3BW7 A;  4ZOH B;  1AHV A;  1MBB A;  1FIQ B;  3FW7 A;  3I99 A;  1W1S A;  1VAO A;  2VFU A;  1E0Y A;  3AM9 A;  2W3R A;  3LAE A;  2EXR A;  5L6G A;  3SR6 B;  3FW8 A;  5AE2 A;  1ZXI C;  5G5G B;  2Y3R A;  5L6F A;  2AXR A;  2UUU A;  2Y4G A;  2E3T A;  2QPM A;  5ADZ A;  1T3Q C;  5AWV A;  3RJ8 A;  2O3G A;  5HHZ A;  3TSJ A;  1SB3 B;  3S1C A;  2WDW A;  2R2Z A;  3HSU A;  1JRO A;  1N5X A;  2RK5 A;  4BC9 A;  5FXF A;  2VAO A;  4PVH A;  4PVJ A;  5K8E A;  5FXE A;  2W55 A;  4XLO A;  1FFV C;  1W1J A;  5HQX A;  4PZF A;  4PWB A;  2MBR A;  3NVY B;  1N63 C;  2GQT A;  4PVE A;  1WYG A;  3FW9 A;  3NRZ B;  1N60 C;  1E8H A;  3KJM A;  5HMR A;  2BVF A;  1RM6 B;  2BVH A;  1HSK A;  4BBY A;  4JAY A;  2QKN A;  3B9J B;  3PM9 A;  4BCA A;  3VTE A;  3D2D A;  3FWA A;  3EUB 3;  2UUV A;  3S1E A;  3D2J A;  3W8Z A;  4PYT A;  1W1K A;  4PVK A;  2W54 A;  2GQU A;  5G5H B;  5I1W A;  3AMZ A;  3S1D A;  1WVF A;  1JRP A;  3D2H A;  3TSH A;  3RJA A;  4UD8 A;  2Y3S A;  2Q4W A;  3DED A;  2OAI A;  1DII A;  2NQW A;  1FO4 A;  1AHU A;  1W1O A;  4MLA A;  2VFS A;  4JB1 A;  1W1L A;  2PLS A;  1AHZ A;  3DQ0 A;  4PWC A;  3LLB A;  2I0K A;  5D79 A;  1VDV A;  1V97 A;  4DNS A;  2W3S A;  3HRD C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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