5L6FA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylobiose
Total Genus 148
50100150200250300350400450020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
50100150200250300350400450400300200100
050100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
molecule keywords FAD linked oxidase-like protein
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6fA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6fA02
2BVGA 3FWAA 3D2DA 3FW7A 2Y4GA 4UD8A 3D2HA 2Y3RA 3RJ8A 5L6FA 2UUUA 3POPA 3HSUA 4PWCA 3W8WA 3W8ZA 2Y3SA 4PWBA 5AWVA 3PQBA 3VTEA 4DNSA 3GSYA 4XLOA 5K8EA 2Y08A 5I1VA 2WDWA 4PVKA 4EC3A 5D79A 3D2JA 3RJAA 3TSJA 3FW9A 3TSHA 1ZR6A 4PVEA 5I1WA 2AXRA 2UUVA 2IPIA 3FW8A 4PVHA 4PZFA 5L6GA 2BVFA 4PVJA 3W8XA 2BVHA
chains in the Genus database with same CATH superfamily
2EXRA 3DQ0A 5ADZA 2QPMA 2VFSA 4HG0A 2NQWA 1FIQB 1N5WC 1T3QC 2UUUA 3HSUA 4PWCA 3EUB3 4BBYA 2VFTA 3B9JB 1UXYA 2MBRA 2PLSA 3VTEA 1N63C 3DEDA 3I99A 3NVWB 4MLAA 1DIQA 4OALA 3PM9A 5K8EA 2Y08A 1W1MA 2W3SA 1E8GA 1DZNA 4EC3A 1W1QA 5D79A 3LAEA 4BC9A 3S1CA 1W1OA 5I1WA 1WVEA 2UUVA 4JAYA 2IPIA 3FW8A 2W55A 1AHUA 4O95A 5L6GA 3TX1A 2BVFA 4UD8A 2P3HA 1N5XA 1V97A 1DIIA 1I19A 5AE2A 2E3TA 2Y3SA 4PWBA 1SB3B 1W1SA 3PQBA 3BW7A 1MBBA 3GSYA 2OAIA 1WVFA 2I0KA 3ETRB 1F0XA 3D2JA 5HMRA 3RJAA 4JB1A 3TSHA 3LLBA 2R2ZA 3JS8A 1RM6B 1QLUA 2AXRA 5G5GB 2PLIA 4PVHA 4PZFA 5FXEA 5HHZA 3W8XA 1W1JA 1E0YA 2BVGA 2VFRA 2QKNA 3AMZA 3FW7A 2W3RA 2Y4GA 5HQXA 3AM9A 2Y3RA 2GQUA 5L6FA 3RJ8A 2VFUA 3POPA 3NRZB 3S1FA 1JROA 1N61C 1VDVA 5AWVA 2P4PA 2W54A 3S1EA 4ZOHB 2RK5A 5FXPA 5I1VA 5FXDA 1E8FA 1WYGA 3NVYB 5AE1A 1ZR6A 1N62C 1HSKA 1MBTA 3C0PA 1AHVA 4BCAA 1FO4A 3HRDC 4PVEA 2BVHA 2R8DA 1N60C 1W1RA 3FWAA 3D2DA 2YVSA 1QLTA 2Q4WA 3D2HA 3KJMA 3W8WA 2GQTA 5G5HB 5AE3A 1JRPA 3W8ZA 1ZXIC 4PYTA 2O3GA 1E8HA 1FFVC 2VAOA 2VFVA 4DNSA 1FFUC 1AHZA 3NVZB 3NVVB 4XLOA 4BC7A 3SR6B 1W1LA 1VAOA 2WDWA 4PVKA 3NS1B 5FXFA 3TSJA 3FW9A 3S1DA 2P13A 3AN1A 1W1KA 2Q85A 4PVJA 4ML8A
chains in the Genus database with same CATH topology
2EXRA 3DQ0A 5ADZA 2QPMA 2VFSA 4HG0A 2NQWA 1FIQB 1N5WC 1T3QC 2UUUA 3HSUA 4PWCA 3EUB3 4BBYA 2VFTA 3B9JB 1UXYA 2MBRA 2PLSA 3VTEA 1N63C 3DEDA 3I99A 3NVWB 4MLAA 1DIQA 4OALA 3PM9A 5K8EA 2Y08A 1W1MA 2W3SA 1E8GA 1DZNA 4EC3A 1W1QA 5D79A 3LAEA 4BC9A 3S1CA 1W1OA 5I1WA 1WVEA 2UUVA 4JAYA 2IPIA 3FW8A 2W55A 1AHUA 4O95A 5L6GA 3TX1A 2BVFA 4UD8A 2P3HA 1N5XA 1V97A 1DIIA 1I19A 5AE2A 2E3TA 2Y3SA 4PWBA 1SB3B 1W1SA 3PQBA 3BW7A 1MBBA 3GSYA 2OAIA 1WVFA 2I0KA 3ETRB 1F0XA 3D2JA 5HMRA 3RJAA 4JB1A 3TSHA 3LLBA 2R2ZA 3JS8A 1RM6B 1QLUA 2AXRA 5G5GB 2PLIA 4PVHA 4PZFA 5FXEA 5HHZA 3W8XA 1W1JA 1E0YA 2BVGA 2VFRA 2QKNA 3AMZA 3FW7A 2W3RA 2Y4GA 5HQXA 3AM9A 2Y3RA 2GQUA 5L6FA 3RJ8A 2VFUA 3POPA 3NRZB 3S1FA 1JROA 1N61C 1VDVA 5AWVA 2P4PA 2W54A 3S1EA 4ZOHB 2RK5A 5FXPA 5I1VA 5FXDA 1E8FA 1WYGA 3NVYB 5AE1A 1ZR6A 1N62C 1HSKA 1MBTA 3C0PA 1AHVA 4BCAA 1FO4A 3HRDC 4PVEA 2BVHA 2R8DA 1N60C 1W1RA 3FWAA 3D2DA 2YVSA 1QLTA 2Q4WA 3D2HA 3KJMA 3W8WA 2GQTA 5G5HB 5AE3A 1JRPA 3W8ZA 1ZXIC 4PYTA 2O3GA 1E8HA 1FFVC 2VAOA 2VFVA 4DNSA 1FFUC 1AHZA 3NVZB 3NVVB 4XLOA 4BC7A 3SR6B 1W1LA 1VAOA 2WDWA 4PVKA 3NS1B 5FXFA 3TSJA 3FW9A 3S1DA 2P13A 3AN1A 1W1KA 2Q85A 4PVJA 4ML8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BVG A;  3FWA A;  3D2D A;  3FW7 A;  2Y4G A;  4UD8 A;  3D2H A;  2Y3R A;  3RJ8 A;  5L6F A;  2UUU A;  3POP A;  3HSU A;  4PWC A;  3W8W A;  3W8Z A;  2Y3S A;  4PWB A;  5AWV A;  3PQB A;  3VTE A;  4DNS A;  3GSY A;  4XLO A;  5K8E A;  2Y08 A;  5I1V A;  2WDW A;  4PVK A;  4EC3 A;  5D79 A;  3D2J A;  3RJA A;  3TSJ A;  3FW9 A;  3TSH A;  1ZR6 A;  4PVE A;  5I1W A;  2AXR A;  2UUV A;  2IPI A;  3FW8 A;  4PVH A;  4PZF A;  5L6G A;  2BVF A;  4PVJ A;  3W8X A;  2BVH A; 
#chains in the Genus database with same CATH topology
 2EXR A;  3DQ0 A;  5ADZ A;  2QPM A;  2VFS A;  4HG0 A;  2NQW A;  1FIQ B;  1N5W C;  1T3Q C;  2UUU A;  3HSU A;  4PWC A;  3EUB 3;  4BBY A;  2VFT A;  3B9J B;  1UXY A;  2MBR A;  2PLS A;  3VTE A;  1N63 C;  3DED A;  3I99 A;  3NVW B;  4MLA A;  1DIQ A;  4OAL A;  3PM9 A;  5K8E A;  2Y08 A;  1W1M A;  2W3S A;  1E8G A;  1DZN A;  4EC3 A;  1W1Q A;  5D79 A;  3LAE A;  4BC9 A;  3S1C A;  1W1O A;  5I1W A;  1WVE A;  2UUV A;  4JAY A;  2IPI A;  3FW8 A;  2W55 A;  1AHU A;  4O95 A;  5L6G A;  3TX1 A;  2BVF A;  4UD8 A;  2P3H A;  1N5X A;  1V97 A;  1DII A;  1I19 A;  5AE2 A;  2E3T A;  2Y3S A;  4PWB A;  1SB3 B;  1W1S A;  3PQB A;  3BW7 A;  1MBB A;  3GSY A;  2OAI A;  1WVF A;  2I0K A;  3ETR B;  1F0X A;  3D2J A;  5HMR A;  3RJA A;  4JB1 A;  3TSH A;  3LLB A;  2R2Z A;  3JS8 A;  1RM6 B;  1QLU A;  2AXR A;  5G5G B;  2PLI A;  4PVH A;  4PZF A;  5FXE A;  5HHZ A;  3W8X A;  1W1J A;  1E0Y A;  2BVG A;  2VFR A;  2QKN A;  3AMZ A;  3FW7 A;  2W3R A;  2Y4G A;  5HQX A;  3AM9 A;  2Y3R A;  2GQU A;  5L6F A;  3RJ8 A;  2VFU A;  3POP A;  3NRZ B;  3S1F A;  1JRO A;  1N61 C;  1VDV A;  5AWV A;  2P4P A;  2W54 A;  3S1E A;  4ZOH B;  2RK5 A;  5FXP A;  5I1V A;  5FXD A;  1E8F A;  1WYG A;  3NVY B;  5AE1 A;  1ZR6 A;  1N62 C;  1HSK A;  1MBT A;  3C0P A;  1AHV A;  4BCA A;  1FO4 A;  3HRD C;  4PVE A;  2BVH A;  2R8D A;  1N60 C;  1W1R A;  3FWA A;  3D2D A;  2YVS A;  1QLT A;  2Q4W A;  3D2H A;  3KJM A;  3W8W A;  2GQT A;  5G5H B;  5AE3 A;  1JRP A;  3W8Z A;  1ZXI C;  4PYT A;  2O3G A;  1E8H A;  1FFV C;  2VAO A;  2VFV A;  4DNS A;  1FFU C;  1AHZ A;  3NVZ B;  3NVV B;  4XLO A;  4BC7 A;  3SR6 B;  1W1L A;  1VAO A;  2WDW A;  4PVK A;  3NS1 B;  5FXF A;  3TSJ A;  3FW9 A;  3S1D A;  2P13 A;  3AN1 A;  1W1K A;  2Q85 A;  4PVJ A;  4ML8 A; 
#chains in the Genus database with same CATH homology
 2EXR A;  3DQ0 A;  5ADZ A;  2QPM A;  2VFS A;  4HG0 A;  2NQW A;  1FIQ B;  1N5W C;  1T3Q C;  2UUU A;  3HSU A;  4PWC A;  3EUB 3;  4BBY A;  2VFT A;  3B9J B;  1UXY A;  2MBR A;  2PLS A;  3VTE A;  1N63 C;  3DED A;  3I99 A;  3NVW B;  4MLA A;  1DIQ A;  4OAL A;  3PM9 A;  5K8E A;  2Y08 A;  1W1M A;  2W3S A;  1E8G A;  1DZN A;  4EC3 A;  1W1Q A;  5D79 A;  3LAE A;  4BC9 A;  3S1C A;  1W1O A;  5I1W A;  1WVE A;  2UUV A;  4JAY A;  2IPI A;  3FW8 A;  2W55 A;  1AHU A;  4O95 A;  5L6G A;  3TX1 A;  2BVF A;  4UD8 A;  2P3H A;  1N5X A;  1V97 A;  1DII A;  1I19 A;  5AE2 A;  2E3T A;  2Y3S A;  4PWB A;  1SB3 B;  1W1S A;  3PQB A;  3BW7 A;  1MBB A;  3GSY A;  2OAI A;  1WVF A;  2I0K A;  3ETR B;  1F0X A;  3D2J A;  5HMR A;  3RJA A;  4JB1 A;  3TSH A;  3LLB A;  2R2Z A;  3JS8 A;  1RM6 B;  1QLU A;  2AXR A;  5G5G B;  2PLI A;  4PVH A;  4PZF A;  5FXE A;  5HHZ A;  3W8X A;  1W1J A;  1E0Y A;  2BVG A;  2VFR A;  2QKN A;  3AMZ A;  3FW7 A;  2W3R A;  2Y4G A;  5HQX A;  3AM9 A;  2Y3R A;  2GQU A;  5L6F A;  3RJ8 A;  2VFU A;  3POP A;  3NRZ B;  3S1F A;  1JRO A;  1N61 C;  1VDV A;  5AWV A;  2P4P A;  2W54 A;  3S1E A;  4ZOH B;  2RK5 A;  5FXP A;  5I1V A;  5FXD A;  1E8F A;  1WYG A;  3NVY B;  5AE1 A;  1ZR6 A;  1N62 C;  1HSK A;  1MBT A;  3C0P A;  1AHV A;  4BCA A;  1FO4 A;  3HRD C;  4PVE A;  2BVH A;  2R8D A;  1N60 C;  1W1R A;  3FWA A;  3D2D A;  2YVS A;  1QLT A;  2Q4W A;  3D2H A;  3KJM A;  3W8W A;  2GQT A;  5G5H B;  5AE3 A;  1JRP A;  3W8Z A;  1ZXI C;  4PYT A;  2O3G A;  1E8H A;  1FFV C;  2VAO A;  2VFV A;  4DNS A;  1FFU C;  1AHZ A;  3NVZ B;  3NVV B;  4XLO A;  4BC7 A;  3SR6 B;  1W1L A;  1VAO A;  2WDW A;  4PVK A;  3NS1 B;  5FXF A;  3TSJ A;  3FW9 A;  3S1D A;  2P13 A;  3AN1 A;  1W1K A;  2Q85 A;  4PVJ A;  4ML8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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