5L6GA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylose
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule keywords FAD linked oxidase-like protein
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6gA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6gA02
3HSUA 3D2HA 5L6FA 5K8EA 4PWCA 1ZR6A 4EC3A 4PVEA 2BVHA 3PQBA 4UD8A 5I1VA 3VTEA 2Y4GA 3RJAA 4XLOA 2WDWA 2AXRA 3W8WA 3W8ZA 2Y3SA 5AWVA 2BVGA 3RJ8A 5D79A 2BVFA 3FW8A 3D2DA 4PZFA 2IPIA 3POPA 4PWBA 5L6GA 3TSHA 4PVHA 3W8XA 3FW7A 2UUUA 4DNSA 3FW9A 3GSYA 4PVKA 2UUVA 3TSJA 4PVJA 3FWAA 2Y3RA 5I1WA 3D2JA 2Y08A
chains in the Genus database with same CATH superfamily
3S1EA 2R8DA 2RK5A 1FIQB 2BVHA 5G5GB 4UD8A 1W1QA 4BC7A 1W1OA 1WVFA 3RJAA 3S1FA 1W1MA 2WDWA 2AXRA 2P13A 3JS8A 3B9JB 5HQXA 3DEDA 2BVGA 4ML8A 1DIQA 5D79A 1AHUA 3NVVB 1W1JA 1W1LA 2IPIA 3NVWB 2YVSA 1SB3B 2VFVA 2W3SA 5HHZA 1VAOA 3LLBA 3FW9A 1DIIA 4PVJA 3TSJA 2W55A 2P4PA 1WYGA 1ZXIC 1N5XA 5I1WA 2VFSA 2VFUA 2Y08A 3SR6B 3HSUA 1QLUA 3D2HA 4PWCA 1N63C 1ZR6A 2EXRA 2I0KA 3NVYB 3PQBA 2O3GA 4PYTA 4ZOHB 1RM6B 1AHVA 1WVEA 3W8WA 3AMZA 1T3QC 2VFRA 4BCAA 2P3HA 3D2DA 5G5HB 1MBTA 3TSHA 1AHZA 3FW7A 4BBYA 2UUUA 5HMRA 4JAYA 3TX1A 4PVKA 1I19A 2UUVA 2Q85A 4DNSA 1N62C 2QKNA 2E3TA 3KJMA 3AM9A 1E8GA 3NRZB 2PLSA 1UXYA 3D2JA 2OAIA 1E0YA 5K8EA 3S1DA 1E8FA 1JROA 4PVEA 1QLTA 5FXPA 1MBBA 1N61C 1DZNA 5I1VA 2Y4GA 2NQWA 4XLOA 1W1RA 2QPMA 5AWVA 5FXEA 5AE1A 2BVFA 2MBRA 3FW8A 5ADZA 4PZFA 4BC9A 4PWBA 5FXDA 3W8XA 1E8HA 3NVZB 3NS1B 2PLIA 3DQ0A 3GSYA 1FO4A 5AE2A 1V97A 3AN1A 3S1CA 1HSKA 4HG0A 1FFVC 3HRDC 1FFUC 5L6FA 3EUB3 2VAOA 4EC3A 1F0XA 3C0PA 4MLAA 3VTEA 4OALA 2W54A 3BW7A 3W8ZA 2GQTA 2W3RA 2Y3SA 1JRPA 2Q4WA 3RJ8A 2VFTA 1N5WC 3LAEA 3ETRB 2GQUA 2R2ZA 4O95A 1W1SA 3PM9A 3POPA 5L6GA 4PVHA 3I99A 5FXFA 4JB1A 1VDVA 3FWAA 2Y3RA 1W1KA 1N60C 5AE3A
chains in the Genus database with same CATH topology
3S1EA 2R8DA 2RK5A 1FIQB 2BVHA 5G5GB 4UD8A 1W1QA 4BC7A 1W1OA 1WVFA 3RJAA 3S1FA 1W1MA 2WDWA 2AXRA 2P13A 3JS8A 3B9JB 5HQXA 3DEDA 2BVGA 4ML8A 1DIQA 5D79A 1AHUA 3NVVB 1W1JA 1W1LA 2IPIA 3NVWB 2YVSA 1SB3B 2VFVA 2W3SA 5HHZA 1VAOA 3LLBA 3FW9A 1DIIA 4PVJA 3TSJA 2W55A 2P4PA 1WYGA 1ZXIC 1N5XA 5I1WA 2VFSA 2VFUA 2Y08A 3SR6B 3HSUA 1QLUA 3D2HA 4PWCA 1N63C 1ZR6A 2EXRA 2I0KA 3NVYB 3PQBA 2O3GA 4PYTA 4ZOHB 1RM6B 1AHVA 1WVEA 3W8WA 3AMZA 1T3QC 2VFRA 4BCAA 2P3HA 3D2DA 5G5HB 1MBTA 3TSHA 1AHZA 3FW7A 4BBYA 2UUUA 5HMRA 4JAYA 3TX1A 4PVKA 1I19A 2UUVA 2Q85A 4DNSA 1N62C 2QKNA 2E3TA 3KJMA 3AM9A 1E8GA 3NRZB 2PLSA 1UXYA 3D2JA 2OAIA 1E0YA 5K8EA 3S1DA 1E8FA 1JROA 4PVEA 1QLTA 5FXPA 1MBBA 1N61C 1DZNA 5I1VA 2Y4GA 2NQWA 4XLOA 1W1RA 2QPMA 5AWVA 5FXEA 5AE1A 2BVFA 2MBRA 3FW8A 5ADZA 4PZFA 4BC9A 4PWBA 5FXDA 3W8XA 1E8HA 3NVZB 3NS1B 2PLIA 3DQ0A 3GSYA 1FO4A 5AE2A 1V97A 3AN1A 3S1CA 1HSKA 4HG0A 1FFVC 3HRDC 1FFUC 5L6FA 3EUB3 2VAOA 4EC3A 1F0XA 3C0PA 4MLAA 3VTEA 4OALA 2W54A 3BW7A 3W8ZA 2GQTA 2W3RA 2Y3SA 1JRPA 2Q4WA 3RJ8A 2VFTA 1N5WC 3LAEA 3ETRB 2GQUA 2R2ZA 4O95A 1W1SA 3PM9A 3POPA 5L6GA 4PVHA 3I99A 5FXFA 4JB1A 1VDVA 3FWAA 2Y3RA 1W1KA 1N60C 5AE3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HSU A;  3D2H A;  5L6F A;  5K8E A;  4PWC A;  1ZR6 A;  4EC3 A;  4PVE A;  2BVH A;  3PQB A;  4UD8 A;  5I1V A;  3VTE A;  2Y4G A;  3RJA A;  4XLO A;  2WDW A;  2AXR A;  3W8W A;  3W8Z A;  2Y3S A;  5AWV A;  2BVG A;  3RJ8 A;  5D79 A;  2BVF A;  3FW8 A;  3D2D A;  4PZF A;  2IPI A;  3POP A;  4PWB A;  5L6G A;  3TSH A;  4PVH A;  3W8X A;  3FW7 A;  2UUU A;  4DNS A;  3FW9 A;  3GSY A;  4PVK A;  2UUV A;  3TSJ A;  4PVJ A;  3FWA A;  2Y3R A;  5I1W A;  3D2J A;  2Y08 A; 
#chains in the Genus database with same CATH topology
 3S1E A;  2R8D A;  2RK5 A;  1FIQ B;  2BVH A;  5G5G B;  4UD8 A;  1W1Q A;  4BC7 A;  1W1O A;  1WVF A;  3RJA A;  3S1F A;  1W1M A;  2WDW A;  2AXR A;  2P13 A;  3JS8 A;  3B9J B;  5HQX A;  3DED A;  2BVG A;  4ML8 A;  1DIQ A;  5D79 A;  1AHU A;  3NVV B;  1W1J A;  1W1L A;  2IPI A;  3NVW B;  2YVS A;  1SB3 B;  2VFV A;  2W3S A;  5HHZ A;  1VAO A;  3LLB A;  3FW9 A;  1DII A;  4PVJ A;  3TSJ A;  2W55 A;  2P4P A;  1WYG A;  1ZXI C;  1N5X A;  5I1W A;  2VFS A;  2VFU A;  2Y08 A;  3SR6 B;  3HSU A;  1QLU A;  3D2H A;  4PWC A;  1N63 C;  1ZR6 A;  2EXR A;  2I0K A;  3NVY B;  3PQB A;  2O3G A;  4PYT A;  4ZOH B;  1RM6 B;  1AHV A;  1WVE A;  3W8W A;  3AMZ A;  1T3Q C;  2VFR A;  4BCA A;  2P3H A;  3D2D A;  5G5H B;  1MBT A;  3TSH A;  1AHZ A;  3FW7 A;  4BBY A;  2UUU A;  5HMR A;  4JAY A;  3TX1 A;  4PVK A;  1I19 A;  2UUV A;  2Q85 A;  4DNS A;  1N62 C;  2QKN A;  2E3T A;  3KJM A;  3AM9 A;  1E8G A;  3NRZ B;  2PLS A;  1UXY A;  3D2J A;  2OAI A;  1E0Y A;  5K8E A;  3S1D A;  1E8F A;  1JRO A;  4PVE A;  1QLT A;  5FXP A;  1MBB A;  1N61 C;  1DZN A;  5I1V A;  2Y4G A;  2NQW A;  4XLO A;  1W1R A;  2QPM A;  5AWV A;  5FXE A;  5AE1 A;  2BVF A;  2MBR A;  3FW8 A;  5ADZ A;  4PZF A;  4BC9 A;  4PWB A;  5FXD A;  3W8X A;  1E8H A;  3NVZ B;  3NS1 B;  2PLI A;  3DQ0 A;  3GSY A;  1FO4 A;  5AE2 A;  1V97 A;  3AN1 A;  3S1C A;  1HSK A;  4HG0 A;  1FFV C;  3HRD C;  1FFU C;  5L6F A;  3EUB 3;  2VAO A;  4EC3 A;  1F0X A;  3C0P A;  4MLA A;  3VTE A;  4OAL A;  2W54 A;  3BW7 A;  3W8Z A;  2GQT A;  2W3R A;  2Y3S A;  1JRP A;  2Q4W A;  3RJ8 A;  2VFT A;  1N5W C;  3LAE A;  3ETR B;  2GQU A;  2R2Z A;  4O95 A;  1W1S A;  3PM9 A;  3POP A;  5L6G A;  4PVH A;  3I99 A;  5FXF A;  4JB1 A;  1VDV A;  3FWA A;  2Y3R A;  1W1K A;  1N60 C;  5AE3 A; 
#chains in the Genus database with same CATH homology
 3S1E A;  2R8D A;  2RK5 A;  1FIQ B;  2BVH A;  5G5G B;  4UD8 A;  1W1Q A;  4BC7 A;  1W1O A;  1WVF A;  3RJA A;  3S1F A;  1W1M A;  2WDW A;  2AXR A;  2P13 A;  3JS8 A;  3B9J B;  5HQX A;  3DED A;  2BVG A;  4ML8 A;  1DIQ A;  5D79 A;  1AHU A;  3NVV B;  1W1J A;  1W1L A;  2IPI A;  3NVW B;  2YVS A;  1SB3 B;  2VFV A;  2W3S A;  5HHZ A;  1VAO A;  3LLB A;  3FW9 A;  1DII A;  4PVJ A;  3TSJ A;  2W55 A;  2P4P A;  1WYG A;  1ZXI C;  1N5X A;  5I1W A;  2VFS A;  2VFU A;  2Y08 A;  3SR6 B;  3HSU A;  1QLU A;  3D2H A;  4PWC A;  1N63 C;  1ZR6 A;  2EXR A;  2I0K A;  3NVY B;  3PQB A;  2O3G A;  4PYT A;  4ZOH B;  1RM6 B;  1AHV A;  1WVE A;  3W8W A;  3AMZ A;  1T3Q C;  2VFR A;  4BCA A;  2P3H A;  3D2D A;  5G5H B;  1MBT A;  3TSH A;  1AHZ A;  3FW7 A;  4BBY A;  2UUU A;  5HMR A;  4JAY A;  3TX1 A;  4PVK A;  1I19 A;  2UUV A;  2Q85 A;  4DNS A;  1N62 C;  2QKN A;  2E3T A;  3KJM A;  3AM9 A;  1E8G A;  3NRZ B;  2PLS A;  1UXY A;  3D2J A;  2OAI A;  1E0Y A;  5K8E A;  3S1D A;  1E8F A;  1JRO A;  4PVE A;  1QLT A;  5FXP A;  1MBB A;  1N61 C;  1DZN A;  5I1V A;  2Y4G A;  2NQW A;  4XLO A;  1W1R A;  2QPM A;  5AWV A;  5FXE A;  5AE1 A;  2BVF A;  2MBR A;  3FW8 A;  5ADZ A;  4PZF A;  4BC9 A;  4PWB A;  5FXD A;  3W8X A;  1E8H A;  3NVZ B;  3NS1 B;  2PLI A;  3DQ0 A;  3GSY A;  1FO4 A;  5AE2 A;  1V97 A;  3AN1 A;  3S1C A;  1HSK A;  4HG0 A;  1FFV C;  3HRD C;  1FFU C;  5L6F A;  3EUB 3;  2VAO A;  4EC3 A;  1F0X A;  3C0P A;  4MLA A;  3VTE A;  4OAL A;  2W54 A;  3BW7 A;  3W8Z A;  2GQT A;  2W3R A;  2Y3S A;  1JRP A;  2Q4W A;  3RJ8 A;  2VFT A;  1N5W C;  3LAE A;  3ETR B;  2GQU A;  2R2Z A;  4O95 A;  1W1S A;  3PM9 A;  3POP A;  5L6G A;  4PVH A;  3I99 A;  5FXF A;  4JB1 A;  1VDV A;  3FWA A;  2Y3R A;  1W1K A;  1N60 C;  5AE3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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