5L6GA

Xylooligosaccharide oxidase from myceliophthora thermophila c1 in complex with xylose
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
473
structure length
473
Chain Sequence
AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Myceliophthora thermophila (strain atcc 42464 / bcrc 31852 / dsm 1799)
molecule keywords FAD linked oxidase-like protein
total genus 148
structure length 473
sequence length 473
ec nomenclature ec 1.1.3.-:
pdb deposition date 2016-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 5l6gA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 5l6gA02
3GSYA 4EC3A 2UUVA 4PVKA 3W8XA 4UD8A 1ZR6A 3FWAA 2Y3SA 2AXRA 2BVFA 3FW8A 3FW9A 2BVGA 3PQBA 5I1WA 5K8EA 4XLOA 4PVEA 3W8ZA 2Y3RA 3FW7A 4PWCA 3VTEA 3W8WA 2BVHA 4PVJA 4PWBA 2Y08A 2WDWA 2IPIA 3RJAA 5D79A 3TSJA 2Y4GA 5I1VA 3D2HA 3TSHA 3HSUA 5AWVA 3D2JA 4DNSA 2UUUA 4PZFA 5L6GA 3RJ8A 3POPA 5L6FA 4PVHA 3D2DA
chains in the Genus database with same CATH superfamily
4EC3A 2UUVA 3W8XA 2W3SA 1FO4A 1VDVA 1E8GA 2AXRA 2R2ZA 3FW9A 5ADZA 2BVGA 2VFRA 3W8ZA 5AE3A 4BCAA 2Y3RA 3NVWB 4PWCA 5AE1A 4PVJA 2PLSA 1E0YA 5FXDA 1N61C 2YVSA 2QPMA 1W1MA 1JROA 2OAIA 4PZFA 1W1LA 5L6GA 3S1FA 3S1EA 2QKNA 3RJ8A 3NRZB 4BC9A 1E8FA 1V97A 4PVHA 1T3QC 3AN1A 3TX1A 4PVKA 4JB1A 3S1DA 2VFSA 1ZR6A 1AHUA 2W3RA 5G5HB 2W55A 5G5GB 1W1RA 2I0KA 1WVFA 1UXYA 3FW8A 5FXFA 2GQTA 3PQBA 5K8EA 4XLOA 3FW7A 2RK5A 1N63C 2R8DA 3NVVB 2WDWA 1FFVC 3RJAA 1N60C 1N5XA 3NVZB 1MBBA 1W1KA 3HSUA 1DZNA 3C0PA 5AWVA 1W1JA 3D2JA 2NQWA 2P13A 3POPA 1N5WC 3D2DA 5HHZA 2Q4WA 5FXEA 1MBTA 2VFTA 1F0XA 1SB3B 3FWAA 3NVYB 3ETRB 5AE2A 1RM6B 2Y3SA 2BVFA 1DIQA 5FXPA 1W1SA 1W1OA 2PLIA 3B9JB 3W8WA 4ML8A 4PVEA 1DIIA 1E8HA 3VTEA 1AHZA 2BVHA 2Y08A 2VFVA 1WYGA 5D79A 3TSJA 1FIQB 2Y4GA 3BW7A 3D2HA 3JS8A 3LAEA 1W1QA 4PYTA 2EXRA 3TSHA 2Q85A 2P3HA 3LLBA 1HSKA 1VAOA 3I99A 4O95A 3DEDA 2GQUA 1WVEA 4BC7A 2E3TA 1I19A 3GSYA 1QLTA 3NS1B 5HMRA 4UD8A 2VFUA 3PM9A 1FFUC 1N62C 3KJMA 1QLUA 1JRPA 5I1WA 3AMZA 1ZXIC 1AHVA 4PWBA 3SR6B 2IPIA 4HG0A 2W54A 3HRDC 4OALA 3AM9A 2VAOA 5I1VA 3EUB3 3DQ0A 2P4PA 2O3GA 4DNSA 2MBRA 5HQXA 2UUUA 4JAYA 3S1CA 4MLAA 5L6FA 4ZOHB 4BBYA
chains in the Genus database with same CATH topology
4EC3A 2UUVA 3W8XA 2W3SA 1FO4A 1VDVA 1E8GA 2AXRA 2R2ZA 3FW9A 5ADZA 2BVGA 2VFRA 3W8ZA 5AE3A 4BCAA 2Y3RA 3NVWB 4PWCA 5AE1A 4PVJA 2PLSA 1E0YA 5FXDA 1N61C 2YVSA 2QPMA 1W1MA 1JROA 2OAIA 4PZFA 1W1LA 5L6GA 3S1FA 3S1EA 2QKNA 3RJ8A 3NRZB 4BC9A 1E8FA 1V97A 4PVHA 1T3QC 3AN1A 3TX1A 4PVKA 4JB1A 3S1DA 2VFSA 1ZR6A 1AHUA 2W3RA 5G5HB 2W55A 5G5GB 1W1RA 2I0KA 1WVFA 1UXYA 3FW8A 5FXFA 2GQTA 3PQBA 5K8EA 4XLOA 3FW7A 2RK5A 1N63C 2R8DA 3NVVB 2WDWA 1FFVC 3RJAA 1N60C 1N5XA 3NVZB 1MBBA 1W1KA 3HSUA 1DZNA 3C0PA 5AWVA 1W1JA 3D2JA 2NQWA 2P13A 3POPA 1N5WC 3D2DA 5HHZA 2Q4WA 5FXEA 1MBTA 2VFTA 1F0XA 1SB3B 3FWAA 3NVYB 3ETRB 5AE2A 1RM6B 2Y3SA 2BVFA 1DIQA 5FXPA 1W1SA 1W1OA 2PLIA 3B9JB 3W8WA 4ML8A 4PVEA 1DIIA 1E8HA 3VTEA 1AHZA 2BVHA 2Y08A 2VFVA 1WYGA 5D79A 3TSJA 1FIQB 2Y4GA 3BW7A 3D2HA 3JS8A 3LAEA 1W1QA 4PYTA 2EXRA 3TSHA 2Q85A 2P3HA 3LLBA 1HSKA 1VAOA 3I99A 4O95A 3DEDA 2GQUA 1WVEA 4BC7A 2E3TA 1I19A 3GSYA 1QLTA 3NS1B 5HMRA 4UD8A 2VFUA 3PM9A 1FFUC 1N62C 3KJMA 1QLUA 1JRPA 5I1WA 3AMZA 1ZXIC 1AHVA 4PWBA 3SR6B 2IPIA 4HG0A 2W54A 3HRDC 4OALA 3AM9A 2VAOA 5I1VA 3EUB3 3DQ0A 2P4PA 2O3GA 4DNSA 2MBRA 5HQXA 2UUUA 4JAYA 3S1CA 4MLAA 5L6FA 4ZOHB 4BBYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GSY A;  4EC3 A;  2UUV A;  4PVK A;  3W8X A;  4UD8 A;  1ZR6 A;  3FWA A;  2Y3S A;  2AXR A;  2BVF A;  3FW8 A;  3FW9 A;  2BVG A;  3PQB A;  5I1W A;  5K8E A;  4XLO A;  4PVE A;  3W8Z A;  2Y3R A;  3FW7 A;  4PWC A;  3VTE A;  3W8W A;  2BVH A;  4PVJ A;  4PWB A;  2Y08 A;  2WDW A;  2IPI A;  3RJA A;  5D79 A;  3TSJ A;  2Y4G A;  5I1V A;  3D2H A;  3TSH A;  3HSU A;  5AWV A;  3D2J A;  4DNS A;  2UUU A;  4PZF A;  5L6G A;  3RJ8 A;  3POP A;  5L6F A;  4PVH A;  3D2D A; 
#chains in the Genus database with same CATH topology
 4EC3 A;  2UUV A;  3W8X A;  2W3S A;  1FO4 A;  1VDV A;  1E8G A;  2AXR A;  2R2Z A;  3FW9 A;  5ADZ A;  2BVG A;  2VFR A;  3W8Z A;  5AE3 A;  4BCA A;  2Y3R A;  3NVW B;  4PWC A;  5AE1 A;  4PVJ A;  2PLS A;  1E0Y A;  5FXD A;  1N61 C;  2YVS A;  2QPM A;  1W1M A;  1JRO A;  2OAI A;  4PZF A;  1W1L A;  5L6G A;  3S1F A;  3S1E A;  2QKN A;  3RJ8 A;  3NRZ B;  4BC9 A;  1E8F A;  1V97 A;  4PVH A;  1T3Q C;  3AN1 A;  3TX1 A;  4PVK A;  4JB1 A;  3S1D A;  2VFS A;  1ZR6 A;  1AHU A;  2W3R A;  5G5H B;  2W55 A;  5G5G B;  1W1R A;  2I0K A;  1WVF A;  1UXY A;  3FW8 A;  5FXF A;  2GQT A;  3PQB A;  5K8E A;  4XLO A;  3FW7 A;  2RK5 A;  1N63 C;  2R8D A;  3NVV B;  2WDW A;  1FFV C;  3RJA A;  1N60 C;  1N5X A;  3NVZ B;  1MBB A;  1W1K A;  3HSU A;  1DZN A;  3C0P A;  5AWV A;  1W1J A;  3D2J A;  2NQW A;  2P13 A;  3POP A;  1N5W C;  3D2D A;  5HHZ A;  2Q4W A;  5FXE A;  1MBT A;  2VFT A;  1F0X A;  1SB3 B;  3FWA A;  3NVY B;  3ETR B;  5AE2 A;  1RM6 B;  2Y3S A;  2BVF A;  1DIQ A;  5FXP A;  1W1S A;  1W1O A;  2PLI A;  3B9J B;  3W8W A;  4ML8 A;  4PVE A;  1DII A;  1E8H A;  3VTE A;  1AHZ A;  2BVH A;  2Y08 A;  2VFV A;  1WYG A;  5D79 A;  3TSJ A;  1FIQ B;  2Y4G A;  3BW7 A;  3D2H A;  3JS8 A;  3LAE A;  1W1Q A;  4PYT A;  2EXR A;  3TSH A;  2Q85 A;  2P3H A;  3LLB A;  1HSK A;  1VAO A;  3I99 A;  4O95 A;  3DED A;  2GQU A;  1WVE A;  4BC7 A;  2E3T A;  1I19 A;  3GSY A;  1QLT A;  3NS1 B;  5HMR A;  4UD8 A;  2VFU A;  3PM9 A;  1FFU C;  1N62 C;  3KJM A;  1QLU A;  1JRP A;  5I1W A;  3AMZ A;  1ZXI C;  1AHV A;  4PWB A;  3SR6 B;  2IPI A;  4HG0 A;  2W54 A;  3HRD C;  4OAL A;  3AM9 A;  2VAO A;  5I1V A;  3EUB 3;  3DQ0 A;  2P4P A;  2O3G A;  4DNS A;  2MBR A;  5HQX A;  2UUU A;  4JAY A;  3S1C A;  4MLA A;  5L6F A;  4ZOH B;  4BBY A; 
#chains in the Genus database with same CATH homology
 4EC3 A;  2UUV A;  3W8X A;  2W3S A;  1FO4 A;  1VDV A;  1E8G A;  2AXR A;  2R2Z A;  3FW9 A;  5ADZ A;  2BVG A;  2VFR A;  3W8Z A;  5AE3 A;  4BCA A;  2Y3R A;  3NVW B;  4PWC A;  5AE1 A;  4PVJ A;  2PLS A;  1E0Y A;  5FXD A;  1N61 C;  2YVS A;  2QPM A;  1W1M A;  1JRO A;  2OAI A;  4PZF A;  1W1L A;  5L6G A;  3S1F A;  3S1E A;  2QKN A;  3RJ8 A;  3NRZ B;  4BC9 A;  1E8F A;  1V97 A;  4PVH A;  1T3Q C;  3AN1 A;  3TX1 A;  4PVK A;  4JB1 A;  3S1D A;  2VFS A;  1ZR6 A;  1AHU A;  2W3R A;  5G5H B;  2W55 A;  5G5G B;  1W1R A;  2I0K A;  1WVF A;  1UXY A;  3FW8 A;  5FXF A;  2GQT A;  3PQB A;  5K8E A;  4XLO A;  3FW7 A;  2RK5 A;  1N63 C;  2R8D A;  3NVV B;  2WDW A;  1FFV C;  3RJA A;  1N60 C;  1N5X A;  3NVZ B;  1MBB A;  1W1K A;  3HSU A;  1DZN A;  3C0P A;  5AWV A;  1W1J A;  3D2J A;  2NQW A;  2P13 A;  3POP A;  1N5W C;  3D2D A;  5HHZ A;  2Q4W A;  5FXE A;  1MBT A;  2VFT A;  1F0X A;  1SB3 B;  3FWA A;  3NVY B;  3ETR B;  5AE2 A;  1RM6 B;  2Y3S A;  2BVF A;  1DIQ A;  5FXP A;  1W1S A;  1W1O A;  2PLI A;  3B9J B;  3W8W A;  4ML8 A;  4PVE A;  1DII A;  1E8H A;  3VTE A;  1AHZ A;  2BVH A;  2Y08 A;  2VFV A;  1WYG A;  5D79 A;  3TSJ A;  1FIQ B;  2Y4G A;  3BW7 A;  3D2H A;  3JS8 A;  3LAE A;  1W1Q A;  4PYT A;  2EXR A;  3TSH A;  2Q85 A;  2P3H A;  3LLB A;  1HSK A;  1VAO A;  3I99 A;  4O95 A;  3DED A;  2GQU A;  1WVE A;  4BC7 A;  2E3T A;  1I19 A;  3GSY A;  1QLT A;  3NS1 B;  5HMR A;  4UD8 A;  2VFU A;  3PM9 A;  1FFU C;  1N62 C;  3KJM A;  1QLU A;  1JRP A;  5I1W A;  3AMZ A;  1ZXI C;  1AHV A;  4PWB A;  3SR6 B;  2IPI A;  4HG0 A;  2W54 A;  3HRD C;  4OAL A;  3AM9 A;  2VAO A;  5I1V A;  3EUB 3;  3DQ0 A;  2P4P A;  2O3G A;  4DNS A;  2MBR A;  5HQX A;  2UUU A;  4JAY A;  3S1C A;  4MLA A;  5L6F A;  4ZOH B;  4BBY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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