4LVI | Genus

Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	194
structure length	190
Chain Sequence	SYMVARMQKMKAGNLGGAFKHNERVSNKDINPSRSHLNYELTDRDRSVSYEKQIKDYVNENKVSNRAIRKDAVLCDEWIITSDKDFFEKLDEEQTRTFFETAKNYFAENYGESNIAYASVHLDESTPHMHMGVVPFENGKLSSKAMFDREELKHIQEDLPRYMSDHGFELERGKLNSEAKHKTVAEFKRA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein/dna
source organism	Streptococcus agalactiae
publication title	Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance. pubmed doi rcsb
molecule keywords	Plasmid recombination enzyme
total genus	60
structure length	190
sequence length	194
ec nomenclature
pdb deposition date	2013-07-26

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.930.30	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein; domain 2	BirA Bifunctional Protein; domain 2	4lviA01

2NS6A 4LVKA 4HT4A 4LVLA 4LVJA 4LVMA 4LVIA
chains in the Genus database with same CATH superfamily

4YRPA 4H2VA 1NYRA 4P3OA 4YRMA 1QE0A 1E22A 4XTZA 2QHVA 1EOVA 2ZT6A 2J3LA 2ZZEA 3V7SA 3UGQA 3PZCA 1WYDA 3L4GB 4P74C 2ZINA 3BJUA 3M4PA 4YYEA 4XEOA 1NJ1A 3NENA 3UFGA 4YRCA 3E9IA 1KOGA 1JJCA 4Q6GA 1HXDA 3R07A 4NCXA 5ELNA 4P71C 2AKWB 1YGBA 4YRLA 4TVWA 4WF2A 4RQFA 1HC7A 2AMCA 4YCUA 2EAYA 4YRQA 2RHSA 2RHQA 4TWAA 1ASYA 2EJ9A 2CJBA 1H4TA 3HXZA 4K87A 3VQXA 4WJ3M 1VQZA 4P73C 4UP9A 2DU5A 4LVJA 2E64A 3MEYA 4G84A 3NEMA 3OD1A 4P3PA 1EIYB 3FJPA 3TEHA 2QHUA 3A7UA 1USYC 3EFSA 4LVMA 2DKGA 4HWOA 1X2HA 4DPGA 5C51B 4YREA 1N9WA 2Q5IA 3ERRA 1YFTA 1QF6A 2C8MA 1LYLA 1G5IA 3MF1A 4YRFA 3QO7A 4O2DA 2ZCEA 2DVEA 3LSSA 2I4MA 2IY5A 4YRIA 2DTOA 3A32A 4BWAA 4YP0A 1L0WA 4P72C 4KR2A 1W66A 4EO4A 4TVAA 3QO8A 4P74A 1KMMA 1WQWA 2C7IA 1BBUA 4L87A 2CIMA 2ZTGA 1E1TA 4H2XA 2CJ9A 1WLEA 4ZTUB 4YRJA 4KQEA 5F5WA 1EFWA 3HXWA 2DQ0A 2ZIOA 3KFUA 3QTCA 2QHSA 1BBWA 1NYQA 1X2GA 4Q15A 3VQWA 2Q5HA 1E24A 3IKLA 2ZNIA 4H02A 4KR3A 4CH3A 4XU3A 4HWSA 2AMCB 4TQFA 1KMNA 2ZR3A 2RHQB 3REXA 4CS2A 4HA8A 1ADJA 2NS6A 2DXUA 3HXUA 2ZZGA 1B76A 3P8YA 1X54A 2E10A 2CGHA 2Q7GA 3L4GA 1B70A 2J3MA 5KNNA 1ATIA 1NJ8A 1G5HA 3RKWA 2DZCA 3TEHB 1NNHA 1E1OA 2PMFA 3BFMA 2AKWA 4J15A 1B7YB 1G51A 5E3IA 2ODRC 1NJ5A 1H4SA 1NJ6A 3NELA 3HY1A 2DTIA 2ALYA 3LC0A 4TTVA 3NETA 4P75A 2A8EA 4YROA 3HFZB 2ARUA 4RQEA 1Z7NA 3TEGA 2QHTA 3HRIA 2Q7HA 3V7CA 4H2WA 3RUXA 1EIYA 4P3NA 3P8VA 3QNEA 1H4QA 4G85A 3V8JA 3HTZA 4H2SA 3A5ZA 1WQ7A 4LVIA 3PCOA 2ARTA 3I7FA 4YDQA 4H2YA 4X5OA 2FYKA 2DDZA 3P8TA 2ZIMA 3DSQA 1RIQA 2XTIA 4PG3A 3VQVA 5HGQA 2ZGWA 4YRSA 3HXYA 12ASA 3VBBA 3V8LA 1SESA 1HTTA 1IL2A 4LVKA 1GGMA 3HXXA 1C0AA 3L1AA 1EVKA 3RKXA 4K86A 2ODRD 3RKYA 1SRYA 3CMQA 3IALA 3RL6A 4P71A 3QO5A 1X56A 3IG2A 4XEMA 3A31A 4XTUA 4XTVA 2DU7A 3VQYA 1BIAA 3V8KA 4CH6A 4UP8A 1JJCB 2ZZFA 2PMEA 4ZIBA 3REUA 2EL9A 4LNSA 4P73A 1PYSA 2DJZA 2DZ9A 1X55A 4CS3A 4XU2A 4OP0A 1WPYA 2G4CA 2P0LA 3ICAA 1FYFA 1X01A 2EJFA 4YRKA 3UGTA 2HNIA 4WJ4A 2RHSB 1NJ2A 1EQRA 1USYA 5K1PA 3A7RA 1B70B 4RMFA 2I4LA 2CJAA 3L2ZA 4YRNA 1J5WA 2EJGA 4UP7A 4TVYA 11ASA 2XGTA 1WNLA 4CS4A 2I4NA 3RIRA 3A7AA 3W3SA 2EWNA 2ALYB 2P5IA 4TQDA 4BW9A 1EVLA 3M4QA 4CH4A 4HT4A 4HWRA 3UH0A 1SETA 5ELOA 1B8AA 4RDXA 2DQ3A 1BIBA 4XU1A 3LSQA 4H2TA 2E41A 3MF2A 4DQ2A 1ADYA 2DXTA 1YFSA 4ZTZB 1YFRA 4P72A 4AH6A 2ZR2A 1B7YA 3MQZA 3HRKA 4XTWA 3PCOB 2IY5B 4PHCA 4HVCA 3RACA 4LVLA 4YCVA 3IKMB 4YPFA 2E65A 3G1ZA 4YRGA 2Q7EA 2ZT8A 3HXVA 3HFZA 4YRRA 4HWPA 4CH5A 3RF1A 3EFRA 1ASZA 5C53B 4XTXA 4XU0A 4EX5A 2DEQA 4TVAB 1YB3A 2E5AA 4XTYA 3V7RA 2I4OA 5C52B 3HY0A 2ARSA 4P75C 2ZNJA 4H2XB 3RGLA 3A74A 4HWTA 3TUPA 3E9HA 2ZT5A 1WU7A 4UPAA 4H2UA 3WQZA 2DTHA 2ZXFA 2E1HA 4WI1A 4YRTA 2ZT7A 5K1XA 2E3CA 1H4VB 4YCWA 1PYSB 4K88A 4OLFA 1SERA 4E51A 3A5YA 3HFVA 1Z7MA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2NS6 A;  4LVK A;  4HT4 A;  4LVL A;  4LVJ A;  4LVM A;  4LVI A; 
#chains in the Genus database with same CATH topology
 4YRP A;  4H2V A;  1NYR A;  4P3O A;  4YRM A;  1QE0 A;  1E22 A;  4XTZ A;  2QHV A;  1EOV A;  2ZT6 A;  2J3L A;  2ZZE A;  3V7S A;  3UGQ A;  3PZC A;  1WYD A;  3L4G B;  4P74 C;  2ZIN A;  3BJU A;  3M4P A;  4YYE A;  4XEO A;  1NJ1 A;  3NEN A;  3UFG A;  4YRC A;  3E9I A;  1KOG A;  1JJC A;  4Q6G A;  1HXD A;  3R07 A;  4NCX A;  5ELN A;  4P71 C;  2AKW B;  1YGB A;  4YRL A;  4TVW A;  4WF2 A;  4RQF A;  1HC7 A;  2AMC A;  4YCU A;  2EAY A;  4YRQ A;  2RHS A;  2RHQ A;  4TWA A;  1ASY A;  2EJ9 A;  2CJB A;  1H4T A;  3HXZ A;  4K87 A;  3VQX A;  4WJ3 M;  1VQZ A;  4P73 C;  4UP9 A;  2DU5 A;  4LVJ A;  2E64 A;  3MEY A;  4G84 A;  3NEM A;  3OD1 A;  4P3P A;  1EIY B;  3FJP A;  3TEH A;  2QHU A;  3A7U A;  1USY C;  3EFS A;  4LVM A;  2DKG A;  4HWO A;  1X2H A;  4DPG A;  5C51 B;  4YRE A;  1N9W A;  2Q5I A;  3ERR A;  1YFT A;  1QF6 A;  2C8M A;  1LYL A;  1G5I A;  3MF1 A;  4YRF A;  3QO7 A;  4O2D A;  2ZCE A;  2DVE A;  3LSS A;  2I4M A;  2IY5 A;  4YRI A;  2DTO A;  3A32 A;  4BWA A;  4YP0 A;  1L0W A;  4P72 C;  4KR2 A;  1W66 A;  4EO4 A;  4TVA A;  3QO8 A;  4P74 A;  1KMM A;  1WQW A;  2C7I A;  1BBU A;  4L87 A;  2CIM A;  2ZTG A;  1E1T A;  4H2X A;  2CJ9 A;  1WLE A;  4ZTU B;  4YRJ A;  4KQE A;  5F5W A;  1EFW A;  3HXW A;  2DQ0 A;  2ZIO A;  3KFU A;  3QTC A;  2QHS A;  1BBW A;  1NYQ A;  1X2G A;  4Q15 A;  3VQW A;  2Q5H A;  1E24 A;  3IKL A;  2ZNI A;  4H02 A;  4KR3 A;  4CH3 A;  4XU3 A;  4HWS A;  2AMC B;  4TQF A;  1KMN A;  2ZR3 A;  2RHQ B;  3REX A;  4CS2 A;  4HA8 A;  1ADJ A;  2NS6 A;  2DXU A;  3HXU A;  2ZZG A;  1B76 A;  3P8Y A;  1X54 A;  2E10 A;  2CGH A;  2Q7G A;  3L4G A;  1B70 A;  2J3M A;  5KNN A;  1ATI A;  1NJ8 A;  1G5H A;  3RKW A;  2DZC A;  3TEH B;  1NNH A;  1E1O A;  2PMF A;  3BFM A;  2AKW A;  4J15 A;  1B7Y B;  1G51 A;  5E3I A;  2ODR C;  1NJ5 A;  1H4S A;  1NJ6 A;  3NEL A;  3HY1 A;  2DTI A;  2ALY A;  3LC0 A;  4TTV A;  3NET A;  4P75 A;  2A8E A;  4YRO A;  3HFZ B;  2ARU A;  4RQE A;  1Z7N A;  3TEG A;  2QHT A;  3HRI A;  2Q7H A;  3V7C A;  4H2W A;  3RUX A;  1EIY A;  4P3N A;  3P8V A;  3QNE A;  1H4Q A;  4G85 A;  3V8J A;  3HTZ A;  4H2S A;  3A5Z A;  1WQ7 A;  4LVI A;  3PCO A;  2ART A;  3I7F A;  4YDQ A;  4H2Y A;  4X5O A;  2FYK A;  2DDZ A;  3P8T A;  2ZIM A;  3DSQ A;  1RIQ A;  2XTI A;  4PG3 A;  3VQV A;  5HGQ A;  2ZGW A;  4YRS A;  3HXY A;  12AS A;  3VBB A;  3V8L A;  1SES A;  1HTT A;  1IL2 A;  4LVK A;  1GGM A;  3HXX A;  1C0A A;  3L1A A;  1EVK A;  3RKX A;  4K86 A;  2ODR D;  3RKY A;  1SRY A;  3CMQ A;  3IAL A;  3RL6 A;  4P71 A;  3QO5 A;  1X56 A;  3IG2 A;  4XEM A;  3A31 A;  4XTU A;  4XTV A;  2DU7 A;  3VQY A;  1BIA A;  3V8K A;  4CH6 A;  4UP8 A;  1JJC B;  2ZZF A;  2PME A;  4ZIB A;  3REU A;  2EL9 A;  4LNS A;  4P73 A;  1PYS A;  2DJZ A;  2DZ9 A;  1X55 A;  4CS3 A;  4XU2 A;  4OP0 A;  1WPY A;  2G4C A;  2P0L A;  3ICA A;  1FYF A;  1X01 A;  2EJF A;  4YRK A;  3UGT A;  2HNI A;  4WJ4 A;  2RHS B;  1NJ2 A;  1EQR A;  1USY A;  5K1P A;  3A7R A;  1B70 B;  4RMF A;  2I4L A;  2CJA A;  3L2Z A;  4YRN A;  1J5W A;  2EJG A;  4UP7 A;  4TVY A;  11AS A;  2XGT A;  1WNL A;  4CS4 A;  2I4N A;  3RIR A;  3A7A A;  3W3S A;  2EWN A;  2ALY B;  2P5I A;  4TQD A;  4BW9 A;  1EVL A;  3M4Q A;  4CH4 A;  4HT4 A;  4HWR A;  3UH0 A;  1SET A;  5ELO A;  1B8A A;  4RDX A;  2DQ3 A;  1BIB A;  4XU1 A;  3LSQ A;  4H2T A;  2E41 A;  3MF2 A;  4DQ2 A;  1ADY A;  2DXT A;  1YFS A;  4ZTZ B;  1YFR A;  4P72 A;  4AH6 A;  2ZR2 A;  1B7Y A;  3MQZ A;  3HRK A;  4XTW A;  3PCO B;  2IY5 B;  4PHC A;  4HVC A;  3RAC A;  4LVL A;  4YCV A;  3IKM B;  4YPF A;  2E65 A;  3G1Z A;  4YRG A;  2Q7E A;  2ZT8 A;  3HXV A;  3HFZ A;  4YRR A;  4HWP A;  4CH5 A;  3RF1 A;  3EFR A;  1ASZ A;  5C53 B;  4XTX A;  4XU0 A;  4EX5 A;  2DEQ A;  4TVA B;  1YB3 A;  2E5A A;  4XTY A;  3V7R A;  2I4O A;  5C52 B;  3HY0 A;  2ARS A;  4P75 C;  2ZNJ A;  4H2X B;  3RGL A;  3A74 A;  4HWT A;  3TUP A;  3E9H A;  2ZT5 A;  1WU7 A;  4UPA A;  4H2U A;  3WQZ A;  2DTH A;  2ZXF A;  2E1H A;  4WI1 A;  4YRT A;  2ZT7 A;  5K1X A;  2E3C A;  1H4V B;  4YCW A;  1PYS B;  4K88 A;  4OLF A;  1SER A;  4E51 A;  3A5Y A;  3HFV A;  1Z7M A; 
#chains in the Genus database with same CATH homology
 4YRP A;  4H2V A;  1NYR A;  4P3O A;  4YRM A;  1QE0 A;  1E22 A;  4XTZ A;  2QHV A;  1EOV A;  2ZT6 A;  2J3L A;  2ZZE A;  3V7S A;  3UGQ A;  3PZC A;  1WYD A;  3L4G B;  4P74 C;  2ZIN A;  3BJU A;  3M4P A;  4YYE A;  4XEO A;  1NJ1 A;  3NEN A;  3UFG A;  4YRC A;  3E9I A;  1KOG A;  1JJC A;  4Q6G A;  1HXD A;  3R07 A;  4NCX A;  5ELN A;  4P71 C;  2AKW B;  1YGB A;  4YRL A;  4TVW A;  4WF2 A;  4RQF A;  1HC7 A;  2AMC A;  4YCU A;  2EAY A;  4YRQ A;  2RHS A;  2RHQ A;  4TWA A;  1ASY A;  2EJ9 A;  2CJB A;  1H4T A;  3HXZ A;  4K87 A;  3VQX A;  4WJ3 M;  1VQZ A;  4P73 C;  4UP9 A;  2DU5 A;  4LVJ A;  2E64 A;  3MEY A;  4G84 A;  3NEM A;  3OD1 A;  4P3P A;  1EIY B;  3FJP A;  3TEH A;  2QHU A;  3A7U A;  1USY C;  3EFS A;  4LVM A;  2DKG A;  4HWO A;  1X2H A;  4DPG A;  5C51 B;  4YRE A;  1N9W A;  2Q5I A;  3ERR A;  1YFT A;  1QF6 A;  2C8M A;  1LYL A;  1G5I A;  3MF1 A;  4YRF A;  3QO7 A;  4O2D A;  2ZCE A;  2DVE A;  3LSS A;  2I4M A;  2IY5 A;  4YRI A;  2DTO A;  3A32 A;  4BWA A;  4YP0 A;  1L0W A;  4P72 C;  4KR2 A;  1W66 A;  4EO4 A;  4TVA A;  3QO8 A;  4P74 A;  1KMM A;  1WQW A;  2C7I A;  1BBU A;  4L87 A;  2CIM A;  2ZTG A;  1E1T A;  4H2X A;  2CJ9 A;  1WLE A;  4ZTU B;  4YRJ A;  4KQE A;  5F5W A;  1EFW A;  3HXW A;  2DQ0 A;  2ZIO A;  3KFU A;  3QTC A;  2QHS A;  1BBW A;  1NYQ A;  1X2G A;  4Q15 A;  3VQW A;  2Q5H A;  1E24 A;  3IKL A;  2ZNI A;  4H02 A;  4KR3 A;  4CH3 A;  4XU3 A;  4HWS A;  2AMC B;  4TQF A;  1KMN A;  2ZR3 A;  2RHQ B;  3REX A;  4CS2 A;  4HA8 A;  1ADJ A;  2NS6 A;  2DXU A;  3HXU A;  2ZZG A;  1B76 A;  3P8Y A;  1X54 A;  2E10 A;  2CGH A;  2Q7G A;  3L4G A;  1B70 A;  2J3M A;  5KNN A;  1ATI A;  1NJ8 A;  1G5H A;  3RKW A;  2DZC A;  3TEH B;  1NNH A;  1E1O A;  2PMF A;  3BFM A;  2AKW A;  4J15 A;  1B7Y B;  1G51 A;  5E3I A;  2ODR C;  1NJ5 A;  1H4S A;  1NJ6 A;  3NEL A;  3HY1 A;  2DTI A;  2ALY A;  3LC0 A;  4TTV A;  3NET A;  4P75 A;  2A8E A;  4YRO A;  3HFZ B;  2ARU A;  4RQE A;  1Z7N A;  3TEG A;  2QHT A;  3HRI A;  2Q7H A;  3V7C A;  4H2W A;  3RUX A;  1EIY A;  4P3N A;  3P8V A;  3QNE A;  1H4Q A;  4G85 A;  3V8J A;  3HTZ A;  4H2S A;  3A5Z A;  1WQ7 A;  4LVI A;  3PCO A;  2ART A;  3I7F A;  4YDQ A;  4H2Y A;  4X5O A;  2FYK A;  2DDZ A;  3P8T A;  2ZIM A;  3DSQ A;  1RIQ A;  2XTI A;  4PG3 A;  3VQV A;  5HGQ A;  2ZGW A;  4YRS A;  3HXY A;  12AS A;  3VBB A;  3V8L A;  1SES A;  1HTT A;  1IL2 A;  4LVK A;  1GGM A;  3HXX A;  1C0A A;  3L1A A;  1EVK A;  3RKX A;  4K86 A;  2ODR D;  3RKY A;  1SRY A;  3CMQ A;  3IAL A;  3RL6 A;  4P71 A;  3QO5 A;  1X56 A;  3IG2 A;  4XEM A;  3A31 A;  4XTU A;  4XTV A;  2DU7 A;  3VQY A;  1BIA A;  3V8K A;  4CH6 A;  4UP8 A;  1JJC B;  2ZZF A;  2PME A;  4ZIB A;  3REU A;  2EL9 A;  4LNS A;  4P73 A;  1PYS A;  2DJZ A;  2DZ9 A;  1X55 A;  4CS3 A;  4XU2 A;  4OP0 A;  1WPY A;  2G4C A;  2P0L A;  3ICA A;  1FYF A;  1X01 A;  2EJF A;  4YRK A;  3UGT A;  2HNI A;  4WJ4 A;  2RHS B;  1NJ2 A;  1EQR A;  1USY A;  5K1P A;  3A7R A;  1B70 B;  4RMF A;  2I4L A;  2CJA A;  3L2Z A;  4YRN A;  1J5W A;  2EJG A;  4UP7 A;  4TVY A;  11AS A;  2XGT A;  1WNL A;  4CS4 A;  2I4N A;  3RIR A;  3A7A A;  3W3S A;  2EWN A;  2ALY B;  2P5I A;  4TQD A;  4BW9 A;  1EVL A;  3M4Q A;  4CH4 A;  4HT4 A;  4HWR A;  3UH0 A;  1SET A;  5ELO A;  1B8A A;  4RDX A;  2DQ3 A;  1BIB A;  4XU1 A;  3LSQ A;  4H2T A;  2E41 A;  3MF2 A;  4DQ2 A;  1ADY A;  2DXT A;  1YFS A;  4ZTZ B;  1YFR A;  4P72 A;  4AH6 A;  2ZR2 A;  1B7Y A;  3MQZ A;  3HRK A;  4XTW A;  3PCO B;  2IY5 B;  4PHC A;  4HVC A;  3RAC A;  4LVL A;  4YCV A;  3IKM B;  4YPF A;  2E65 A;  3G1Z A;  4YRG A;  2Q7E A;  2ZT8 A;  3HXV A;  3HFZ A;  4YRR A;  4HWP A;  4CH5 A;  3RF1 A;  3EFR A;  1ASZ A;  5C53 B;  4XTX A;  4XU0 A;  4EX5 A;  2DEQ A;  4TVA B;  1YB3 A;  2E5A A;  4XTY A;  3V7R A;  2I4O A;  5C52 B;  3HY0 A;  2ARS A;  4P75 C;  2ZNJ A;  4H2X B;  3RGL A;  3A74 A;  4HWT A;  3TUP A;  3E9H A;  2ZT5 A;  1WU7 A;  4UPA A;  4H2U A;  3WQZ A;  2DTH A;  2ZXF A;  2E1H A;  4WI1 A;  4YRT A;  2ZT7 A;  5K1X A;  2E3C A;  1H4V B;  4YCW A;  1PYS B;  4K88 A;  4OLF A;  1SER A;  4E51 A;  3A5Y A;  3HFV A;  1Z7M A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4LVIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN