4LVK | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	195
structure length	191
Chain Sequence	SYMVARMQKMKAGNLGGAFKHNERVSNKDINPSRSHLNYELTDRDRSVSYEKQIKDYVNENKVSNRAIRKDAVLCDEWIITSDKDFFEKLDEEQTRTFFETAKNYFAENYGESNIAYASVHLDESTPHMHMGVVPFENGKLSSKAMFDREELKHIQEDLPRYMSDHGFELERGKLNSEAKHKTVAEFKRAM

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein/dna
source organism	Streptococcus agalactiae
publication title	Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance. pubmed doi rcsb
molecule keywords	Plasmid recombination enzyme
total genus	56
structure length	191
sequence length	195
ec nomenclature
pdb deposition date	2013-07-26

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.930.30	Alpha Beta	2-Layer Sandwich	BirA Bifunctional Protein; domain 2	BirA Bifunctional Protein; domain 2	4lvkA01

2NS6A 4LVLA 4LVMA 4HT4A 4LVJA 4LVKA 4LVIA
chains in the Genus database with same CATH superfamily

4BW9A 5ELOA 4YRPA 1YFTA 1ADYA 4H2XB 4WJ4A 2ZINA 1E22A 2QHTA 3RKYA 2CJ9A 2DEQA 4XEOA 1EVKA 4K87A 1G5IA 3QO5A 4YYEA 5C52B 4H2WA 2ZT7A 4EX5A 4P3PA 4YRCA 1ADJA 3MF2A 1JJCB 4ZTZB 4XU0A 3BJUA 1PYSB 1C0AA 3I7FA 2RHQA 3IKMB 4ZIBA 3HFVA 3RKWA 3E9IA 3NETA 4YRFA 1NYQA 4TQDA 4YRKA 1HTTA 2I4LA 3M4PA 3NEMA 3ERRA 3P8VA 4NCXA 4LVKA 3IG2A 2DXTA 1BBUA 4CH5A 3LC0A 1N9WA 4CS2A 4RQEA 2ZR2A 2ZCEA 1B7YA 2Q7GA 4P74C 4XU2A 1HC7A 2E65A 2ZR3A 3VQXA 3HXYA 3PZCA 2E64A 2QHUA 2DTIA 2IY5B 1YFRA 2ARSA 4OP0A 4G85A 2ALYA 3FJPA 2ZNIA 4L87A 2RHQB 4UPAA 2ODRC 3CMQA 1X2GA 2CJAA 1WU7A 4YRQA 4CS4A 1X55A 3MEYA 2A8EA 2ZNJA 3EFSA 3HXZA 1IL2A 2PMFA 4LNSA 3VQWA 1E24A 1KMMA 4HWTA 4XTVA 4P3OA 4P75A 3HFZA 2DQ0A 4XTWA 3VBBA 4P73A 1B7YB 2ZT8A 3P8TA 3HY1A 3E9HA 1NJ8A 2I4NA 2J3MA 3PCOA 4TVAA 3QTCA 2EJGA 2ARUA 1BIAA 2FYKA 4TVWA 4XU1A 4HWOA 2ALYB 4YRMA 3TEHA 3V8KA 4YROA 4YRJA 2DTHA 3UH0A 4KR3A 4TVYA 2AKWA 1BIBA 4XTXA 3VQVA 4Q6GA 2DZCA 2QHVA 3L2ZA 2C7IA 4XTUA 2Q7EA 1EOVA 4PG3A 4P71A 2E1HA 4YREA 2NS6A 4LVJA 4DPGA 3NELA 1NJ6A 4HWSA 4O2DA 1X54A 3A32A 3M4QA 2Q5HA 2DQ3A 3HFZB 4WI1A 4TTVA 3UGQA 4PHCA 3HRIA 5K1PA 2RHSA 2E3CA 2EL9A 2ZZFA 4YRIA 2DXUA 4CS3A 3EFRA 4BWAA 4YRRA 3QNEA 3G1ZA 3A5ZA 3RL6A 3LSQA 2ZGWA 1NYRA 3PCOB 4TVAB 1B70A 3HRKA 3RGLA 4HT4A 1USYA 1NNHA 3UGTA 4XTZA 4OLFA 3A5YA 1WYDA 2ODRD 1WLEA 1BBWA 3TEHB 4YRGA 3NENA 1H4SA 4E51A 4YP0A 4EO4A 2AKWB 4H02A 5KNNA 4HVCA 4KQEA 5F5WA 1J5WA 2XGTA 1W66A 4P3NA 1B8AA 2J3LA 4P75C 3QO7A 4AH6A 3KFUA 3QO8A 1QF6A 12ASA 4ZTUB 2P0LA 1LYLA 4P73C 4YPFA 2XTIA 2I4OA 4YRNA 2RHSB 3REUA 4RQFA 2ARTA 3UFGA 1G5HA 2DU7A 1B70B 3VQYA 1NJ5A 2ZIMA 3L4GA 3R07A 1WQWA 1E1OA 4P72A 1WPYA 2ZZEA 4K88A 4P71C 2EJFA 1ASZA 3HXWA 2DKGA 3TUPA 4H2UA 2DDZA 4H2YA 3MQZA 3RACA 4Q15A 4YCWA 4XU3A 1EVLA 1KOGA 11ASA 4H2TA 3V8JA 2E10A 2EWNA 1H4QA 4X5OA 2Q7HA 1Z7NA 5C51B 3DSQA 3A7RA 3HY0A 3V7RA 4CH4A 2ZT5A 4K86A 1WQ7A 1USYC 2IY5A 4YCVA 4LVLA 2DU5A 3P8YA 2C8MA 4H2SA 5ELNA 2EAYA 4WF2A 4TQFA 2CGHA 4UP7A 1YB3A 3A7UA 1SESA 1FYFA 3L4GB 3WQZA 1VQZA 2P5IA 2Q5IA 4J15A 1H4VB 2CJBA 3V8LA 1SETA 2E5AA 1SRYA 1X01A 2AMCA 2ZTGA 1HXDA 1YFSA 2ZZGA 4XEMA 1EFWA 5HGQA 3RF1A 1E1TA 4H2VA 1EQRA 1L0WA 3RKXA 3TEGA 5K1XA 1G51A 4UP9A 1EIYA 1NJ2A 1YGBA 1RIQA 2HNIA 3BFMA 1Z7MA 3RIRA 3L1AA 4G84A 2DTOA 3HTZA 3LSSA 3MF1A 3REXA 4YRSA 4H2XA 4CH6A 4WJ3M 4YCUA 2ZT6A 2ZIOA 2PMEA 1QE0A 3W3SA 4P72C 1WNLA 4HWPA 4RDXA 3V7SA 4UP8A 4KR2A 4P74A 2DZ9A 3HXXA 2DJZA 2ZXFA 1JJCA 4TWAA 2CIMA 4XTYA 3IALA 4DQ2A 1SERA 1PYSA 3RUXA 3A31A 3OD1A 2AMCB 3A74A 1X2HA 3ICAA 3A7AA 1B76A 2I4MA 4HWRA 2DVEA 1H4TA 1KMNA 2E41A 3HXVA 5E3IA 2G4CA 4HA8A 3V7CA 1NJ1A 1ATIA 4YRTA 4YDQA 4LVMA 3IKLA 4CH3A 2EJ9A 4RMFA 4YRLA 1GGMA 1EIYB 4LVIA 1ASYA 5C53B 3HXUA 1X56A 2QHSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2NS6 A;  4LVL A;  4LVM A;  4HT4 A;  4LVJ A;  4LVK A;  4LVI A; 
#chains in the Genus database with same CATH topology
 4BW9 A;  5ELO A;  4YRP A;  1YFT A;  1ADY A;  4H2X B;  4WJ4 A;  2ZIN A;  1E22 A;  2QHT A;  3RKY A;  2CJ9 A;  2DEQ A;  4XEO A;  1EVK A;  4K87 A;  1G5I A;  3QO5 A;  4YYE A;  5C52 B;  4H2W A;  2ZT7 A;  4EX5 A;  4P3P A;  4YRC A;  1ADJ A;  3MF2 A;  1JJC B;  4ZTZ B;  4XU0 A;  3BJU A;  1PYS B;  1C0A A;  3I7F A;  2RHQ A;  3IKM B;  4ZIB A;  3HFV A;  3RKW A;  3E9I A;  3NET A;  4YRF A;  1NYQ A;  4TQD A;  4YRK A;  1HTT A;  2I4L A;  3M4P A;  3NEM A;  3ERR A;  3P8V A;  4NCX A;  4LVK A;  3IG2 A;  2DXT A;  1BBU A;  4CH5 A;  3LC0 A;  1N9W A;  4CS2 A;  4RQE A;  2ZR2 A;  2ZCE A;  1B7Y A;  2Q7G A;  4P74 C;  4XU2 A;  1HC7 A;  2E65 A;  2ZR3 A;  3VQX A;  3HXY A;  3PZC A;  2E64 A;  2QHU A;  2DTI A;  2IY5 B;  1YFR A;  2ARS A;  4OP0 A;  4G85 A;  2ALY A;  3FJP A;  2ZNI A;  4L87 A;  2RHQ B;  4UPA A;  2ODR C;  3CMQ A;  1X2G A;  2CJA A;  1WU7 A;  4YRQ A;  4CS4 A;  1X55 A;  3MEY A;  2A8E A;  2ZNJ A;  3EFS A;  3HXZ A;  1IL2 A;  2PMF A;  4LNS A;  3VQW A;  1E24 A;  1KMM A;  4HWT A;  4XTV A;  4P3O A;  4P75 A;  3HFZ A;  2DQ0 A;  4XTW A;  3VBB A;  4P73 A;  1B7Y B;  2ZT8 A;  3P8T A;  3HY1 A;  3E9H A;  1NJ8 A;  2I4N A;  2J3M A;  3PCO A;  4TVA A;  3QTC A;  2EJG A;  2ARU A;  1BIA A;  2FYK A;  4TVW A;  4XU1 A;  4HWO A;  2ALY B;  4YRM A;  3TEH A;  3V8K A;  4YRO A;  4YRJ A;  2DTH A;  3UH0 A;  4KR3 A;  4TVY A;  2AKW A;  1BIB A;  4XTX A;  3VQV A;  4Q6G A;  2DZC A;  2QHV A;  3L2Z A;  2C7I A;  4XTU A;  2Q7E A;  1EOV A;  4PG3 A;  4P71 A;  2E1H A;  4YRE A;  2NS6 A;  4LVJ A;  4DPG A;  3NEL A;  1NJ6 A;  4HWS A;  4O2D A;  1X54 A;  3A32 A;  3M4Q A;  2Q5H A;  2DQ3 A;  3HFZ B;  4WI1 A;  4TTV A;  3UGQ A;  4PHC A;  3HRI A;  5K1P A;  2RHS A;  2E3C A;  2EL9 A;  2ZZF A;  4YRI A;  2DXU A;  4CS3 A;  3EFR A;  4BWA A;  4YRR A;  3QNE A;  3G1Z A;  3A5Z A;  3RL6 A;  3LSQ A;  2ZGW A;  1NYR A;  3PCO B;  4TVA B;  1B70 A;  3HRK A;  3RGL A;  4HT4 A;  1USY A;  1NNH A;  3UGT A;  4XTZ A;  4OLF A;  3A5Y A;  1WYD A;  2ODR D;  1WLE A;  1BBW A;  3TEH B;  4YRG A;  3NEN A;  1H4S A;  4E51 A;  4YP0 A;  4EO4 A;  2AKW B;  4H02 A;  5KNN A;  4HVC A;  4KQE A;  5F5W A;  1J5W A;  2XGT A;  1W66 A;  4P3N A;  1B8A A;  2J3L A;  4P75 C;  3QO7 A;  4AH6 A;  3KFU A;  3QO8 A;  1QF6 A;  12AS A;  4ZTU B;  2P0L A;  1LYL A;  4P73 C;  4YPF A;  2XTI A;  2I4O A;  4YRN A;  2RHS B;  3REU A;  4RQF A;  2ART A;  3UFG A;  1G5H A;  2DU7 A;  1B70 B;  3VQY A;  1NJ5 A;  2ZIM A;  3L4G A;  3R07 A;  1WQW A;  1E1O A;  4P72 A;  1WPY A;  2ZZE A;  4K88 A;  4P71 C;  2EJF A;  1ASZ A;  3HXW A;  2DKG A;  3TUP A;  4H2U A;  2DDZ A;  4H2Y A;  3MQZ A;  3RAC A;  4Q15 A;  4YCW A;  4XU3 A;  1EVL A;  1KOG A;  11AS A;  4H2T A;  3V8J A;  2E10 A;  2EWN A;  1H4Q A;  4X5O A;  2Q7H A;  1Z7N A;  5C51 B;  3DSQ A;  3A7R A;  3HY0 A;  3V7R A;  4CH4 A;  2ZT5 A;  4K86 A;  1WQ7 A;  1USY C;  2IY5 A;  4YCV A;  4LVL A;  2DU5 A;  3P8Y A;  2C8M A;  4H2S A;  5ELN A;  2EAY A;  4WF2 A;  4TQF A;  2CGH A;  4UP7 A;  1YB3 A;  3A7U A;  1SES A;  1FYF A;  3L4G B;  3WQZ A;  1VQZ A;  2P5I A;  2Q5I A;  4J15 A;  1H4V B;  2CJB A;  3V8L A;  1SET A;  2E5A A;  1SRY A;  1X01 A;  2AMC A;  2ZTG A;  1HXD A;  1YFS A;  2ZZG A;  4XEM A;  1EFW A;  5HGQ A;  3RF1 A;  1E1T A;  4H2V A;  1EQR A;  1L0W A;  3RKX A;  3TEG A;  5K1X A;  1G51 A;  4UP9 A;  1EIY A;  1NJ2 A;  1YGB A;  1RIQ A;  2HNI A;  3BFM A;  1Z7M A;  3RIR A;  3L1A A;  4G84 A;  2DTO A;  3HTZ A;  3LSS A;  3MF1 A;  3REX A;  4YRS A;  4H2X A;  4CH6 A;  4WJ3 M;  4YCU A;  2ZT6 A;  2ZIO A;  2PME A;  1QE0 A;  3W3S A;  4P72 C;  1WNL A;  4HWP A;  4RDX A;  3V7S A;  4UP8 A;  4KR2 A;  4P74 A;  2DZ9 A;  3HXX A;  2DJZ A;  2ZXF A;  1JJC A;  4TWA A;  2CIM A;  4XTY A;  3IAL A;  4DQ2 A;  1SER A;  1PYS A;  3RUX A;  3A31 A;  3OD1 A;  2AMC B;  3A74 A;  1X2H A;  3ICA A;  3A7A A;  1B76 A;  2I4M A;  4HWR A;  2DVE A;  1H4T A;  1KMN A;  2E41 A;  3HXV A;  5E3I A;  2G4C A;  4HA8 A;  3V7C A;  1NJ1 A;  1ATI A;  4YRT A;  4YDQ A;  4LVM A;  3IKL A;  4CH3 A;  2EJ9 A;  4RMF A;  4YRL A;  1GGM A;  1EIY B;  4LVI A;  1ASY A;  5C53 B;  3HXU A;  1X56 A;  2QHS A; 
#chains in the Genus database with same CATH homology
 4BW9 A;  5ELO A;  4YRP A;  1YFT A;  1ADY A;  4H2X B;  4WJ4 A;  2ZIN A;  1E22 A;  2QHT A;  3RKY A;  2CJ9 A;  2DEQ A;  4XEO A;  1EVK A;  4K87 A;  1G5I A;  3QO5 A;  4YYE A;  5C52 B;  4H2W A;  2ZT7 A;  4EX5 A;  4P3P A;  4YRC A;  1ADJ A;  3MF2 A;  1JJC B;  4ZTZ B;  4XU0 A;  3BJU A;  1PYS B;  1C0A A;  3I7F A;  2RHQ A;  3IKM B;  4ZIB A;  3HFV A;  3RKW A;  3E9I A;  3NET A;  4YRF A;  1NYQ A;  4TQD A;  4YRK A;  1HTT A;  2I4L A;  3M4P A;  3NEM A;  3ERR A;  3P8V A;  4NCX A;  4LVK A;  3IG2 A;  2DXT A;  1BBU A;  4CH5 A;  3LC0 A;  1N9W A;  4CS2 A;  4RQE A;  2ZR2 A;  2ZCE A;  1B7Y A;  2Q7G A;  4P74 C;  4XU2 A;  1HC7 A;  2E65 A;  2ZR3 A;  3VQX A;  3HXY A;  3PZC A;  2E64 A;  2QHU A;  2DTI A;  2IY5 B;  1YFR A;  2ARS A;  4OP0 A;  4G85 A;  2ALY A;  3FJP A;  2ZNI A;  4L87 A;  2RHQ B;  4UPA A;  2ODR C;  3CMQ A;  1X2G A;  2CJA A;  1WU7 A;  4YRQ A;  4CS4 A;  1X55 A;  3MEY A;  2A8E A;  2ZNJ A;  3EFS A;  3HXZ A;  1IL2 A;  2PMF A;  4LNS A;  3VQW A;  1E24 A;  1KMM A;  4HWT A;  4XTV A;  4P3O A;  4P75 A;  3HFZ A;  2DQ0 A;  4XTW A;  3VBB A;  4P73 A;  1B7Y B;  2ZT8 A;  3P8T A;  3HY1 A;  3E9H A;  1NJ8 A;  2I4N A;  2J3M A;  3PCO A;  4TVA A;  3QTC A;  2EJG A;  2ARU A;  1BIA A;  2FYK A;  4TVW A;  4XU1 A;  4HWO A;  2ALY B;  4YRM A;  3TEH A;  3V8K A;  4YRO A;  4YRJ A;  2DTH A;  3UH0 A;  4KR3 A;  4TVY A;  2AKW A;  1BIB A;  4XTX A;  3VQV A;  4Q6G A;  2DZC A;  2QHV A;  3L2Z A;  2C7I A;  4XTU A;  2Q7E A;  1EOV A;  4PG3 A;  4P71 A;  2E1H A;  4YRE A;  2NS6 A;  4LVJ A;  4DPG A;  3NEL A;  1NJ6 A;  4HWS A;  4O2D A;  1X54 A;  3A32 A;  3M4Q A;  2Q5H A;  2DQ3 A;  3HFZ B;  4WI1 A;  4TTV A;  3UGQ A;  4PHC A;  3HRI A;  5K1P A;  2RHS A;  2E3C A;  2EL9 A;  2ZZF A;  4YRI A;  2DXU A;  4CS3 A;  3EFR A;  4BWA A;  4YRR A;  3QNE A;  3G1Z A;  3A5Z A;  3RL6 A;  3LSQ A;  2ZGW A;  1NYR A;  3PCO B;  4TVA B;  1B70 A;  3HRK A;  3RGL A;  4HT4 A;  1USY A;  1NNH A;  3UGT A;  4XTZ A;  4OLF A;  3A5Y A;  1WYD A;  2ODR D;  1WLE A;  1BBW A;  3TEH B;  4YRG A;  3NEN A;  1H4S A;  4E51 A;  4YP0 A;  4EO4 A;  2AKW B;  4H02 A;  5KNN A;  4HVC A;  4KQE A;  5F5W A;  1J5W A;  2XGT A;  1W66 A;  4P3N A;  1B8A A;  2J3L A;  4P75 C;  3QO7 A;  4AH6 A;  3KFU A;  3QO8 A;  1QF6 A;  12AS A;  4ZTU B;  2P0L A;  1LYL A;  4P73 C;  4YPF A;  2XTI A;  2I4O A;  4YRN A;  2RHS B;  3REU A;  4RQF A;  2ART A;  3UFG A;  1G5H A;  2DU7 A;  1B70 B;  3VQY A;  1NJ5 A;  2ZIM A;  3L4G A;  3R07 A;  1WQW A;  1E1O A;  4P72 A;  1WPY A;  2ZZE A;  4K88 A;  4P71 C;  2EJF A;  1ASZ A;  3HXW A;  2DKG A;  3TUP A;  4H2U A;  2DDZ A;  4H2Y A;  3MQZ A;  3RAC A;  4Q15 A;  4YCW A;  4XU3 A;  1EVL A;  1KOG A;  11AS A;  4H2T A;  3V8J A;  2E10 A;  2EWN A;  1H4Q A;  4X5O A;  2Q7H A;  1Z7N A;  5C51 B;  3DSQ A;  3A7R A;  3HY0 A;  3V7R A;  4CH4 A;  2ZT5 A;  4K86 A;  1WQ7 A;  1USY C;  2IY5 A;  4YCV A;  4LVL A;  2DU5 A;  3P8Y A;  2C8M A;  4H2S A;  5ELN A;  2EAY A;  4WF2 A;  4TQF A;  2CGH A;  4UP7 A;  1YB3 A;  3A7U A;  1SES A;  1FYF A;  3L4G B;  3WQZ A;  1VQZ A;  2P5I A;  2Q5I A;  4J15 A;  1H4V B;  2CJB A;  3V8L A;  1SET A;  2E5A A;  1SRY A;  1X01 A;  2AMC A;  2ZTG A;  1HXD A;  1YFS A;  2ZZG A;  4XEM A;  1EFW A;  5HGQ A;  3RF1 A;  1E1T A;  4H2V A;  1EQR A;  1L0W A;  3RKX A;  3TEG A;  5K1X A;  1G51 A;  4UP9 A;  1EIY A;  1NJ2 A;  1YGB A;  1RIQ A;  2HNI A;  3BFM A;  1Z7M A;  3RIR A;  3L1A A;  4G84 A;  2DTO A;  3HTZ A;  3LSS A;  3MF1 A;  3REX A;  4YRS A;  4H2X A;  4CH6 A;  4WJ3 M;  4YCU A;  2ZT6 A;  2ZIO A;  2PME A;  1QE0 A;  3W3S A;  4P72 C;  1WNL A;  4HWP A;  4RDX A;  3V7S A;  4UP8 A;  4KR2 A;  4P74 A;  2DZ9 A;  3HXX A;  2DJZ A;  2ZXF A;  1JJC A;  4TWA A;  2CIM A;  4XTY A;  3IAL A;  4DQ2 A;  1SER A;  1PYS A;  3RUX A;  3A31 A;  3OD1 A;  2AMC B;  3A74 A;  1X2H A;  3ICA A;  3A7A A;  1B76 A;  2I4M A;  4HWR A;  2DVE A;  1H4T A;  1KMN A;  2E41 A;  3HXV A;  5E3I A;  2G4C A;  4HA8 A;  3V7C A;  1NJ1 A;  1ATI A;  4YRT A;  4YDQ A;  4LVM A;  3IKL A;  4CH3 A;  2EJ9 A;  4RMF A;  4YRL A;  1GGM A;  1EIY B;  4LVI A;  1ASY A;  5C53 B;  3HXU A;  1X56 A;  2QHS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4LVKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN