The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
139
|
sequence length |
353
|
structure length |
353
|
Chain Sequence |
GSHPFDQAVVKDPTASYVDVKARRTFLQSGQLDDRLKAALPKEYDCTTEATPNPQQGEMVIPRRYLSGNHGPVNPDYEPVVTLYRDFEKISATLGNLYVATGKPVYATCLLNMLDKWAKADALLNYDPKSQSWYQVEWSAATAAFALSTMMAEPNVDTAQRERVVKWLNRVARHQTSFPGGDTSCCNNASYWRGQEATIIGVISKDDELFRWGLGRYVQAMGLINEDGSFVHEMTRHEQSLHYQNYAMLPLTMIAETASRQGIDLYAYKENGRDIHSARKFVFAAVKNPDLIKKYASEPQDTRAFKPGRGDLNWIEYQRARFGFADELGFMTVPIFDPRTGGSGTLLAYKPQG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
pubmed doi rcsb |
| molecule tags |
Lyase
|
| source organism |
Sphingomonas
|
| molecule keywords |
Alginate lyase
|
| total genus |
139
|
| structure length |
353
|
| sequence length |
353
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.2.2.3: Mannuronate-specific alginate lyase. |
| pdb deposition date | 2012-03-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05426 | Alginate_lyase | Alginate lyase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Chondroitin AC/alginate lyase |
#chains in the Genus database with same CATH superfamily 1J0M A; 1RWA A; 1LOH A; 1RWH A; 1C82 A; 1X1I A; 1HN0 A; 4OK2 A; 5JMF A; 4MMI A; 2BRV X; 2BRW A; 1W3Y A; 3AFL A; 3NNB A; 1N7R A; 2BRP A; 4OK4 A; 1OJM A; 1RWF A; 2WDA A; 1RWG A; 3E7J A; 4OJZ A; 2FUT A; 3VSN A; 5JMD A; 2FUQ A; 1OJP A; 3VSM A; 1I8Q A; 4F10 A; 3E80 A; 3A0O A; 1N7Q A; 1OJN A; 1X1J A; 1LXM A; 1RWC A; 1N7P A; 4NEI A; 1LXK A; 4OZW A; 4F13 A; 2E24 A; 4OZV A; 2WCO A; 2E22 A; 1F9G A; 4MMH A; 1HMU A; 1HV6 A; 1F1S A; 1J0N A; 1X1H A; 3NFV A; 2Q1F A; 4FNV A; 1OJO A; 1HMW A; 1QAZ A; 4E1Y A; 1HM2 A; 1RW9 A; 2X03 A; 1CB8 A; 1EGU A; 1N7O A; 1N7N A; 1HM3 A; #chains in the Genus database with same CATH topology 1FMI A; 1LOH A; 3HXE B; 3DSV B; 3M01 A; 3PZ1 B; 3PZ4 B; 3DSX B; 3QPF A; 3EU5 B; 1D8D B; 1CEM A; 3VSN A; 4EL8 A; 1H35 A; 5FOB B; 2EAC A; 3M78 A; 3WKF A; 3KQ4 A; 4OZW A; 1W6J A; 1CLC A; 4KTR A; 1WU4 A; 4V1S A; 2GH4 A; 1N4Q B; 3QXF A; 4WVA A; 1KKT A; 2XQW A; 1N1Z A; 3KSL B; 5EAU A; 1HM2 A; 5DGR A; 1N7N A; 1N7O A; 2ZZR A; 4GTP B; 4D4A A; 3Q7F B; 1K72 A; 1D8E B; 4KKI A; 3NNB A; 3P5R A; 1GXN A; 4CE7 A; 1HX9 A; 4GAX A; 4AYQ A; 3QG0 A; 4AYO A; 1H13 A; 3VXD A; 1WU5 A; 3RX7 A; 3PYA A; 1N1B A; 3M00 A; 5IL3 A; 3S4A A; 3M7B A; 3N0F A; 4GL3 A; 5ILK A; 3WUX A; 1DOG A; 5CD2 A; 3DSW B; 5CZL A; 5ILJ A; 2WIN B; 3EU8 A; 5FO7 B; 3QRY A; 4RNQ A; 2QNO A; 2NOJ A; 4M76 A; 3DRA B; 1N22 A; 3HXC B; 3SQC A; 3ANI A; 5EAS A; 1TN6 B; 4E1Y A; 1TNZ B; 4D4D A; 3M77 A; 1FO3 A; 2PMV A; 1O6Q A; 3REN A; 2FUZ A; 3AFL A; 1UMP A; 1O1R B; 2B39 A; 1GLM A; 2F0Y B; 3ANK A; 1FBW A; 1TF4 A; 5JMD A; 1AGM A; 5IK0 A; 3PZ3 B; 4GTQ B; 3A0O A; 3QT9 A; 1N7P A; 3PMM A; 1H3A A; 3T33 A; 3LZ9 A; 3S9V A; 3CU7 A; 1FCE A; 3NFV A; 3WIQ A; 3WIW A; 1N21 A; 2I07 B; 3QFY A; 1X1I A; 1RWH A; 4ZRP A; 1KRF A; 4AYP A; 2EAE A; 2R2L B; 1XWQ A; 1MZC B; 5AGD A; 1TNO B; 2WYN A; 1HZF A; 5IKA A; 1QBQ B; 3ON6 A; 1WZZ A; 2WDA A; 2FUQ A; 1S63 B; 3M7E A; 1N23 A; 3QT3 A; 3WIR A; 1JS4 A; 4YCR A; 1IA6 A; 1IA7 A; 2JJB A; 4DOE A; 1N95 B; 2BBC A; 4FUS A; 5IK9 A; 1NC5 A; 1GXM A; 1RWA A; 1HN0 A; 1W6K A; 4BOK A; 3E73 A; 4MU9 A; 1WU6 A; 1DL2 A; 3M02 A; 4LIX A; 3E32 B; 2V3P A; 3AFJ A; 4ZH5 A; 1R76 A; 4AYR A; 4LNV A; 3K7X A; 5DGQ A; 3WKH A; 2FV1 A; 3D5R A; 1FT2 B; 5GY3 A; 4MMH A; 5MEH A; 1TN8 B; 2FBA A; 1HMW A; 3G6J B; 5ILH A; 5ILZ A; 3M76 A; 3M71 A; 5GZK A; 1HCU A; 1FO2 A; 2DRQ A; 1QQF A; 3M7L A; 1LF6 A; 1N7R A; 3GT5 A; 5JPN B; 2PN5 A; 2ZIR B; 3QXQ A; 1RWG A; 4Z4L A; 3GLY A; 1N20 A; 1H36 A; 1I8Q A; 1LD7 B; 1FT1 B; 3TF4 A; 2A8Z A; 2ZIS B; 2WII B; 2H6I B; 4FXG B; 3K11 A; 2VN4 A; 5M7I A; 2F6D A; 4FNV A; 5M7Y A; 2V8K A; 4YDO B; 1F9O A; 3KLS A; 1HXG A; 4Z4J A; 3Q79 B; 3Q73 B; 2BRV X; 3QDE A; 4ONT A; 3E33 B; 3SAE A; 2GZ6 A; 3W7T A; 2YIK A; 3M72 A; 3RX5 A; 1X81 B; 3P5P A; 1TNB B; 1LXK A; 1TNY B; 2GOX A; 3ACT A; 4GTS B; 3PYB A; 1KWF A; 3S4B A; 2RI9 A; 4CJ1 A; 2XWJ B; 1CB8 A; 2BB6 A; 1H3B A; 1ULV A; 3E37 B; 4ZRQ A; 3SDV A; 3SDQ A; 3C72 B; 4OJZ A; 2FUT A; 1H54 A; 3H7L A; 1N4S B; 2H6G B; 3RRS A; 2AHG A; 1KS8 A; 5C05 A; 2Z07 A; 1N24 A; 2X03 A; 5KKB A; 2D5J A; 1HM3 A; 4GTM B; 1V5C A; 4KTP A; 1SA5 B; 2VN7 A; 4MMI A; 3PZ2 B; 4D4C A; 5ILI A; 1AYX A; 2ONH A; 4WVC A; 3HXB B; 4LNB B; 1C3D A; 1SA4 B; 2ZBL A; 3RSY A; 3M7C A; 4C1S A; 1UT9 A; 1RWC A; 2J5C A; 2SQC A; 4FJQ A; 1FPP B; 2XWB B; 3SFX B; 2E22 A; 2JF4 A; 1G9J A; 1X1H A; 1GHQ A; 4TXT A; 5DHK A; 4GTT B; 3OED A; 1OJO A; 1TNU B; 3W5N A; 4Q2B A; 3Q75 B; 3E34 B; 3S4C A; 3ACS A; 2V3N A; 4GTV B; 4YDE B; 1O1S B; 1LTX B; 1GAI A; 3KSQ B; 4D4B A; 1O6H A; 1O79 A; 5FO8 B; 1G87 A; 3Q78 B; 4LNG B; 2D8L A; 4GTO B; 3SDU A; 3W5M A; 3DSS B; 3HXF B; 3WKI A; 5GW7 A; 1FBO A; 3M73 A; 2B4F A; 4L6X A; 1JCR B; 1N4P B; 1XWT A; 2FV0 A; 1NXC A; 2RI8 A; 3ANJ A; 1TN7 B; 1L2A A; 3VW5 A; 1V7W A; 2CQS A; 2RGK A; 1V7V A; 1J0M A; 4BOJ A; 2H6H B; 4CJ0 A; 4D94 A; 3E30 B; 4MBG B; 3W7S A; 2AFA A; 3E6U A; 1KRE A; 1KSD A; 2DRS A; 1GA2 A; 1X9D A; 4OK4 A; 3HXD B; 1HXA A; 1S64 B; 1JCS B; 3QSP A; 4F10 A; 1VD5 A; 1X1J A; 1XW2 A; 5IK6 A; 1H12 A; 3M74 A; 4OZV A; 2WCO A; 1NL4 B; 4DOD A; 1KZP B; 3EUV B; 2H6F B; 3W7U A; 3CIH A; 1LD8 B; 1O1T B; 2EAB A; 3RX8 A; 5ILD A; 2G0D A; 1RW9 A; 3G4D A; 4GTR B; 1H39 A; 1RQ5 A; 1LF9 A; 3D3I A; 1C82 A; 1L1Y A; 4QT9 A; 4OK2 A; 3OXU A; 1W3Y A; 1UG9 A; 3QFZ A; 3GZK A; 3N0G A; 4ZH1 A; 1OJM A; 3QWT A; 1H3C A; 3E7J A; 1DCE B; 3EQA A; 2CQT A; 3H3K A; 3VSM A; 4L9P B; 1H14 A; 1V5D A; 1KZO B; 5ILY A; 4TF4 A; 2V8I A; 2OKX A; 3DPY B; 3EZ8 A; 4J5T A; 1HV6 A; 3SDT A; 3D5S A; 5JMF A; 1GXO A; 2BED B; 1QSJ A; 3S4D A; 2BB5 A; 4EHM B; 5EAT A; 4ZG8 A; 1N94 B; 5IL8 A; 1O6R A; 1G9G A; 1N7Q A; 1FAE A; 1LXM A; 2V8J A; 3W7X A; 1GAH A; 1FP3 A; 2E24 A; 3H2W A; 4FXK B; 1F9G A; 5CA3 A; 1HMU A; 2EAD A; 2XFG A; 1NI1 B; 2IEJ B; 2JG0 A; 2Q1F A; 3M75 A; 3G4F A; 5JPM B; 1N4R B; 5IM1 A; 3SDR A; 3WKG A; 2BRW A; 5DHI A; 3A3V A; 2BRP A; 2ONG A; 3X17 A; 1IS9 A; 1O5M B; 2NVP A; 1HXC A; 4L0G A; 4WU0 A; 1OJP A; 2DRO A; 3RJ3 A; 3E80 A; 1GSZ A; 1OJN A; 4NEI A; 3Q7A B; 4F13 A; 1N9A B; 1H37 A; 1F1S A; 1JCQ B; 1J0N A; 1SQC A; 1QAZ A; 3SFY B; 3W7W A; 1EGU A; 2AHF A; 1KSC A; 4XUV A; 4DI5 A; 4KKJ A; 3DSU B; 2WY7 A; 1RWF A; 1V7X A; 5FO9 B; 2G02 A; 2DRR A; 4JJJ A; 3P2C A; 2P0V A; 2WY8 A; 4Q88 A; 1F9D A; 5IKH A; 3WC3 A; 3DST B; 4V1R A; 4WVB A; 1G6I A; 2A73 B; 1KFG A; 5E2J A; #chains in the Genus database with same CATH homology 1J0M A; 1RWA A; 1LOH A; 1RWH A; 1C82 A; 1X1I A; 1HN0 A; 4OK2 A; 5JMF A; 4MMI A; 2BRV X; 2BRW A; 1W3Y A; 3AFL A; 3NNB A; 1N7R A; 2BRP A; 4OK4 A; 1OJM A; 1RWF A; 2WDA A; 1RWG A; 3E7J A; 4OJZ A; 2FUT A; 3VSN A; 5JMD A; 2FUQ A; 1OJP A; 3VSM A; 1I8Q A; 4F10 A; 3E80 A; 3A0O A; 1N7Q A; 1OJN A; 1X1J A; 1LXM A; 1RWC A; 1N7P A; 4NEI A; 1LXK A; 4OZW A; 4F13 A; 2E24 A; 4OZV A; 2WCO A; 2E22 A; 1F9G A; 4MMH A; 1HMU A; 1HV6 A; 1F1S A; 1J0N A; 1X1H A; 3NFV A; 2Q1F A; 4FNV A; 1OJO A; 1HMW A; 1QAZ A; 4E1Y A; 1HM2 A; 1RW9 A; 2X03 A; 1CB8 A; 1EGU A; 1N7O A; 1N7N A; 1HM3 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
