The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
164
|
sequence length |
418
|
structure length |
418
|
Chain Sequence |
ALSADSIFNIVEEQTFQYFWDGAEPVSGMARERYHVDGNYPENDMNVVTSGGSGFGVMALLVGIERGYISREQGLERLMKIVSFLEKADRFHGAWPHWLYGETGKVKPFGQKDNGGDLVETSFMIQGLLCVRQYFANGNEQEKALAARIDQLWKAVEFSWYRNGKNVLYWHWSPNYKWQMNFPVTGYNECLIMYILAAASPTHGIPAEVYHEGWAKSGAIKDSINAYGHTLKLSHNFAKEYGGPLFWSHYSYLGLDPHGLKDRYADYWENNLNHVLINREWCIQNPKHYKGYGPDSWGLTASYSVKGYAAHAPGENNDLGVISPTAALSSMPYTPEYSKQAMVHWYNDMRTKIFGKYGFYDAFSETENWYPQQYLAIDQGPIVVMMENYRSGLLWKLFMSCPEVQAGLKKLDFQSPYL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Biochemical and structural analyses of a bacterial endo-beta-1,2-glucanase reveal a new glycoside hydrolase family
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Chitinophaga pinensis (strain atcc 43595 / dsm 2588 / ncib 11800 / uqm 2034)
|
| molecule keywords |
Uncharacterized protein
|
| total genus |
164
|
| structure length |
418
|
| sequence length |
418
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2016-09-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10091 | Glycoamylase | Putative glucoamylase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Glycosyltransferase |
#chains in the Genus database with same CATH superfamily 3EU8 A; 4QT9 A; 5GZK A; 4GL3 A; #chains in the Genus database with same CATH topology 3M78 A; 3P5R A; 2XWJ B; 1N4Q B; 2QNO A; 4OZV A; 1JCS B; 1N7P A; 5FO8 B; 1KZO B; 1XW2 A; 3RX7 A; 1O6Q A; 3PYB A; 3HXB B; 2V8J A; 4E1Y A; 1H54 A; 3RSY A; 1X1J A; 3HXC B; 1KRE A; 3M02 A; 3QRY A; 2BBC A; 1F9D A; 4D4C A; 1GXM A; 2A8Z A; 4MU9 A; 5FO9 B; 3DRA B; 5EAU A; 1N95 B; 4FXG B; 4YDO B; 5GW7 A; 4ZH1 A; 4V1S A; 1V7V A; 4ZRP A; 5GY3 A; 5FO7 B; 1N4P B; 5ILJ A; 3PMM A; 5ILH A; 3TF4 A; 4OZW A; 2PMV A; 3ON6 A; 3D5S A; 2NVP A; 2H6G B; 2WIN B; 2EAB A; 3W7U A; 5KKB A; 1HMW A; 1RW9 A; 1TNY B; 4LNV A; 3QG0 A; 3WKH A; 3S4D A; 4F13 A; 1N9A B; 4WVC A; 2YIK A; 1QAZ A; 2RI9 A; 1SQC A; 3DSW B; 5JMD A; 1RQ5 A; 5E2J A; 2JJB A; 3DSS B; 3QT9 A; 1V5C A; 1KSC A; 4QT9 A; 3AFJ A; 3VSM A; 4F10 A; 2EAC A; 3P2C A; 1TNU B; 3NNB A; 1HV6 A; 2VN7 A; 1G6I A; 1C3D A; 1HMU A; 1SA5 B; 2VN4 A; 4GTO B; 3M74 A; 4M76 A; 1J0M A; 1WU6 A; 3RRS A; 5JMF A; 4EL8 A; 4CJ0 A; 4FUS A; 1FT2 B; 3EU8 A; 1NI1 B; 5EAS A; 5DGQ A; 1FP3 A; 4WVB A; 3RX5 A; 2B4F A; 4DOE A; 3M7L A; 1HZF A; 1G9J A; 2V8I A; 3D3I A; 3E80 A; 1N1B A; 3AFL A; 1RWC A; 1CEM A; 3E33 B; 4L9P B; 3SFY B; 1H3C A; 1MZC B; 4AYO A; 1LD7 B; 1CB8 A; 2J5C A; 3E30 B; 3EU5 B; 4L6X A; 2F6D A; 4KTP A; 2DRO A; 1LF6 A; 2WDA A; 3GT5 A; 1TN6 B; 3EZ8 A; 2GH4 A; 2WY7 A; 4TXT A; 1FBO A; 3WIQ A; 3VXD A; 5MEH A; 3SDV A; 3OED A; 3PZ1 B; 3SDQ A; 3N0G A; 1X81 B; 1O79 A; 2WCO A; 1GAH A; 4OK4 A; 1TNZ B; 5GZK A; 1TNO B; 3H7L A; 3SQC A; 1GA2 A; 4LNG B; 3QXQ A; 4CE7 A; 4Q88 A; 3C72 B; 2GZ6 A; 3WIW A; 2BRV X; 2H6H B; 3M00 A; 1O5M B; 1XWQ A; 1H39 A; 1K72 A; 2XQW A; 5IL8 A; 3Q79 B; 4GL3 A; 4GTP B; 3CU7 A; 1OJN A; 3QDE A; 5IK9 A; 3LZ9 A; 3M01 A; 2AFA A; 5ILI A; 3M77 A; 3W7T A; 3N0F A; 2FV1 A; 5CD2 A; 2WII B; 4GTS B; 2JF4 A; 4RNQ A; 1W3Y A; 2BRW A; 4KTR A; 3Q78 B; 3PYA A; 1LTX B; 3KSL B; 3WKI A; 4Q2B A; 1D8E B; 1LXM A; 1FBW A; 2FV0 A; 3M73 A; 5CZL A; 3PZ3 B; 5IM1 A; 3NFV A; 1JCR B; 1N7R A; 2X03 A; 1JS4 A; 5IKH A; 1GXN A; 2Q1F A; 1J0N A; 1QQF A; 4GTR B; 4L0G A; 1H13 A; 3SDT A; 5JPN B; 4GTM B; 2BB6 A; 5DGR A; 5DHI A; 1TNB B; 3A0O A; 3W7X A; 1IA6 A; 3S4C A; 2FBA A; 2P0V A; 3DSV B; 2G02 A; 1HM2 A; 3M7E A; 3QSP A; 1UG9 A; 1FMI A; 5DHK A; 4GAX A; 2SQC A; 2FUZ A; 4LIX A; 3CIH A; 5IK6 A; 3M75 A; 3Q7F B; 1H14 A; 3SAE A; 3PZ2 B; 4BOJ A; 3S9V A; 5M7Y A; 2DRR A; 1N7O A; 2DRQ A; 3DPY B; 1FO3 A; 1FPP B; 3M72 A; 2XWB B; 4D4B A; 1KRF A; 4MMI A; 2ZIS B; 3S4A A; 1FAE A; 3SFX B; 1DOG A; 2IEJ B; 3ANI A; 1N23 A; 1UMP A; 1KZP B; 1F1S A; 2A73 B; 1O1S B; 1W6K A; 4ZG8 A; 1N94 B; 1S64 B; 1QSJ A; 3QT3 A; 1ULV A; 1H3A A; 1KKT A; 1GLM A; 5C05 A; 1IA7 A; 1L1Y A; 1N24 A; 3E73 A; 1GHQ A; 1HXC A; 1X1I A; 3KSQ B; 3QWT A; 1XWT A; 1G9G A; 3W5N A; 4YDE B; 4TF4 A; 3PZ4 B; 3X17 A; 1AGM A; 1TN8 B; 4KKI A; 1RWG A; 3E7J A; 1N7N A; 1X1H A; 3ACS A; 3HXE B; 4AYQ A; 1G87 A; 4J5T A; 2ONG A; 3H3K A; 1LF9 A; 5IK0 A; 5FOB B; 1N1Z A; 2I07 B; 1L2A A; 2JG0 A; 4GTT B; 1QBQ B; 1KFG A; 2XFG A; 3DSU B; 1FO2 A; 1O6R A; 5AGD A; 4D94 A; 5ILZ A; 1F9G A; 1FT1 B; 5ILD A; 1H12 A; 3DST B; 4V1R A; 1KWF A; 1GXO A; 3S4B A; 2E24 A; 2D5J A; 1GSZ A; 3RX8 A; 1RWA A; 3GLY A; 1N4R B; 3E34 B; 1AYX A; 1OJP A; 1HCU A; 3A3V A; 5M7I A; 1OJO A; 3REN A; 4DOD A; 2B39 A; 4WVA A; 2E22 A; 2H6I B; 1HXG A; 4AYP A; 4ONT A; 2ZZR A; 3WKF A; 1OJM A; 1UT9 A; 3SDU A; 3HXF B; 4JJJ A; 2FUQ A; 5IKA A; 5CA3 A; 4GTQ B; 3WKG A; 4LNB B; 4FNV A; 2ONH A; 1TF4 A; 1WU4 A; 4Z4L A; 1LD8 B; 2DRS A; 2NOJ A; 4YCR A; 1JCQ B; 1RWF A; 1VD5 A; 1GAI A; 1N4S B; 3EUV B; 1N7Q A; 3QFY A; 3QFZ A; 2EAE A; 2WYN A; 5ILK A; 1X9D A; 1KS8 A; 2V3N A; 2RGK A; 4WU0 A; 3WC3 A; 1DL2 A; 1LXK A; 3WIR A; 4EHM B; 2H6F B; 5EAT A; 4C1S A; 2RI8 A; 3D5R A; 4D4A A; 3VW5 A; 4D4D A; 1EGU A; 4OK2 A; 3KLS A; 4XUV A; 1KSD A; 1N22 A; 1FCE A; 1NXC A; 2V8K A; 3Q75 B; 4AYR A; 2AHG A; 4CJ1 A; 3E32 B; 5IL3 A; 3K11 A; 3M71 A; 5ILY A; 1V7X A; 1S63 B; 1HXA A; 3WUX A; 5JPM B; 1WU5 A; 4ZRQ A; 1HM3 A; 1SA4 B; 3G4F A; 2BB5 A; 2EAD A; 3M76 A; 1LOH A; 2CQS A; 2OKX A; 3G6J B; 3HXD B; 2ZBL A; 1N21 A; 2FUT A; 3H2W A; 3QPF A; 3T33 A; 3QXF A; 1H37 A; 4MMH A; 2F0Y B; 3ANJ A; 2Z07 A; 1IS9 A; 1F9O A; 1O1R B; 4KKJ A; 3M7C A; 4BOK A; 2D8L A; 3Q73 B; 2CQT A; 2WY8 A; 4Z4J A; 1W6J A; 3W5M A; 1H3B A; 3OXU A; 1HX9 A; 4FJQ A; 3E6U A; 3Q7A B; 2BRP A; 4GTV B; 3ANK A; 1NL4 B; 2R2L B; 3W7W A; 3W7S A; 1I8Q A; 3EQA A; 4MBG B; 1H35 A; 3M7B A; 3K7X A; 4ZH5 A; 3GZK A; 1O6H A; 1H36 A; 2GOX A; 3P5P A; 1N20 A; 1C82 A; 2G0D A; 3RJ3 A; 1HN0 A; 3KQ4 A; 4OJZ A; 1TN7 B; 2BED B; 3G4D A; 4FXK B; 1WZZ A; 2ZIR B; 1D8D B; 1DCE B; 3DSX B; 3ACT A; 3VSN A; 3SDR A; 1V5D A; 1CLC A; 2AHF A; 3E37 B; 1R76 A; 4NEI A; 4DI5 A; 1O1T B; 1RWH A; 1V7W A; 1NC5 A; 2V3P A; 2PN5 A; #chains in the Genus database with same CATH homology 3M78 A; 3P5R A; 2XWJ B; 1N4Q B; 2QNO A; 1JCS B; 5FO8 B; 1KZO B; 1XW2 A; 3RX7 A; 1O6Q A; 3PYB A; 3HXB B; 2V8J A; 1H54 A; 3RSY A; 3HXC B; 1KRE A; 3QRY A; 2BBC A; 1F9D A; 4D4C A; 1GXM A; 2A8Z A; 4MU9 A; 5FO9 B; 3DRA B; 1N95 B; 4FXG B; 4YDO B; 5GW7 A; 4ZH1 A; 4V1S A; 1V7V A; 4ZRP A; 5GY3 A; 5FO7 B; 1N4P B; 3PMM A; 3TF4 A; 2PMV A; 3ON6 A; 3D5S A; 2NVP A; 2H6G B; 2WIN B; 2EAB A; 3W7U A; 5KKB A; 1TNY B; 4LNV A; 3QG0 A; 3WKH A; 3S4D A; 1N9A B; 4WVC A; 2YIK A; 2RI9 A; 1SQC A; 3DSW B; 1RQ5 A; 5E2J A; 2JJB A; 3DSS B; 3QT9 A; 1V5C A; 1KSC A; 4QT9 A; 3AFJ A; 2EAC A; 3P2C A; 1TNU B; 2VN7 A; 1G6I A; 1C3D A; 1SA5 B; 2VN4 A; 4GTO B; 3M74 A; 4M76 A; 3RRS A; 1WU6 A; 4EL8 A; 4CJ0 A; 4FUS A; 1FT2 B; 3EU8 A; 1NI1 B; 5DGQ A; 1FP3 A; 4WVB A; 3RX5 A; 2B4F A; 4DOE A; 3M7L A; 1HZF A; 1G9J A; 2V8I A; 3D3I A; 4L9P B; 1CEM A; 3E33 B; 3SFY B; 1H3C A; 1MZC B; 4AYO A; 1LD7 B; 3E30 B; 3EU5 B; 4L6X A; 2F6D A; 4KTP A; 2DRO A; 1LF6 A; 3GT5 A; 1TN6 B; 3EZ8 A; 2GH4 A; 2WY7 A; 4TXT A; 1FBO A; 3WIQ A; 3VXD A; 5MEH A; 3SDV A; 3OED A; 3PZ1 B; 3SDQ A; 1X81 B; 1O79 A; 1GAH A; 1TNZ B; 5GZK A; 1TNO B; 3H7L A; 3SQC A; 1GA2 A; 4LNG B; 3QXQ A; 4CE7 A; 4Q88 A; 3C72 B; 2GZ6 A; 3WIW A; 2H6H B; 1O5M B; 1XWQ A; 1H39 A; 1K72 A; 2XQW A; 3Q79 B; 4GL3 A; 4GTP B; 3CU7 A; 3QDE A; 2AFA A; 3M77 A; 3W7T A; 2FV1 A; 5CD2 A; 2WII B; 2JF4 A; 4KTR A; 3Q78 B; 3PYA A; 1LTX B; 3KSL B; 3WKI A; 4Q2B A; 1D8E B; 1FBW A; 2FV0 A; 3M73 A; 5CZL A; 3PZ3 B; 1JCR B; 1JS4 A; 1GXN A; 1QQF A; 4GTR B; 4L0G A; 1H13 A; 3SDT A; 5JPN B; 4GTM B; 2BB6 A; 5DGR A; 1TNB B; 3W7X A; 1IA6 A; 3S4C A; 2FBA A; 2P0V A; 3DSV B; 2G02 A; 3M7E A; 3QSP A; 1UG9 A; 1FMI A; 2SQC A; 2FUZ A; 4LIX A; 3CIH A; 3M75 A; 3Q7F B; 1H14 A; 3SAE A; 3PZ2 B; 4BOJ A; 3S9V A; 5M7Y A; 2DRR A; 2DRQ A; 3DPY B; 1FO3 A; 1FPP B; 3M72 A; 2XWB B; 4D4B A; 1KRF A; 2ZIS B; 3S4A A; 1FAE A; 3SFX B; 1DOG A; 2IEJ B; 3ANI A; 1UMP A; 1KZP B; 2A73 B; 1O1S B; 1W6K A; 4ZG8 A; 1N94 B; 1S64 B; 1QSJ A; 3QT3 A; 1ULV A; 1H3A A; 1KKT A; 1GLM A; 1IA7 A; 1L1Y A; 3E73 A; 1GHQ A; 3KSQ B; 3QWT A; 1XWT A; 1G9G A; 3W5N A; 4YDE B; 4TF4 A; 3PZ4 B; 3X17 A; 1AGM A; 1TN8 B; 4KKI A; 3ACS A; 3HXE B; 4AYQ A; 1G87 A; 4J5T A; 3H3K A; 1LF9 A; 5FOB B; 2I07 B; 1L2A A; 4GTT B; 2JG0 A; 1QBQ B; 1KFG A; 2XFG A; 3DSU B; 1FO2 A; 1O6R A; 5AGD A; 4D94 A; 1FT1 B; 1H12 A; 3DST B; 4V1R A; 1KWF A; 1GXO A; 3S4B A; 2D5J A; 1GSZ A; 3RX8 A; 3GLY A; 1N4R B; 3E34 B; 1AYX A; 1HCU A; 3A3V A; 5M7I A; 3REN A; 4DOD A; 2B39 A; 4WVA A; 2H6I B; 4AYP A; 4ONT A; 2ZZR A; 3WKF A; 1UT9 A; 3SDU A; 3HXF B; 4JJJ A; 5CA3 A; 4GTQ B; 3WKG A; 4LNB B; 1TF4 A; 1WU4 A; 4Z4L A; 1LD8 B; 2DRS A; 2NOJ A; 4YCR A; 1JCQ B; 1VD5 A; 1GAI A; 1N4S B; 3EUV B; 3QFY A; 3QFZ A; 2EAE A; 2WYN A; 1X9D A; 1KS8 A; 2V3N A; 2RGK A; 4WU0 A; 3WC3 A; 1DL2 A; 3WIR A; 4EHM B; 2H6F B; 4C1S A; 2RI8 A; 3D5R A; 4D4A A; 3VW5 A; 4D4D A; 3KLS A; 4XUV A; 1KSD A; 1FCE A; 1NXC A; 2V8K A; 3Q75 B; 4AYR A; 2AHG A; 4CJ1 A; 3E32 B; 3K11 A; 3M71 A; 1V7X A; 1S63 B; 3WUX A; 5JPM B; 1WU5 A; 4ZRQ A; 1SA4 B; 3M76 A; 2BB5 A; 2EAD A; 2CQS A; 2OKX A; 3G6J B; 3HXD B; 2ZBL A; 3H2W A; 3QPF A; 3T33 A; 3QXF A; 1H37 A; 2F0Y B; 3ANJ A; 2Z07 A; 1IS9 A; 1F9O A; 1O1R B; 4KKJ A; 3M7C A; 4BOK A; 2D8L A; 3Q73 B; 2CQT A; 2WY8 A; 4Z4J A; 1W6J A; 3W5M A; 1H3B A; 3OXU A; 3E6U A; 3Q7A B; 4GTV B; 3ANK A; 1NL4 B; 2R2L B; 3W7W A; 3W7S A; 3EQA A; 4MBG B; 1H35 A; 3M7B A; 3K7X A; 4ZH5 A; 3GZK A; 1O6H A; 1H36 A; 2GOX A; 3P5P A; 2G0D A; 3RJ3 A; 3KQ4 A; 1TN7 B; 2BED B; 4FXK B; 1WZZ A; 2ZIR B; 1D8D B; 1DCE B; 3DSX B; 3ACT A; 3SDR A; 1V5D A; 1CLC A; 2AHF A; 3E37 B; 1R76 A; 1O1T B; 4GTS B; 1V7W A; 1NC5 A; 2V3P A; 2PN5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
