1KG5A

Crystal structure of the k142q mutant of e.coli muty (core fragment)
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
225
structure length
225
Chain Sequence
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVQRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords A/G-specific adenine glycosylase
publication title Analysis of the E.coli MutY DNA glycosylase structure and function by site-directed mutagenesis
rcsb
source organism Escherichia coli
total genus 77
structure length 225
sequence length 225
ec nomenclature ec 3.2.2.31: Adenine glycosylase.
pdb deposition date 2001-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF10576 EndIII_4Fe-2S Iron-sulfur binding domain of endonuclease III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1kg5A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1kg5A01
1LMZA 2NOLA 3F10A 2NOZA 3S6IA 1LWWA 3CVTA 1XQPA 2YG9A 1YQLA 4UNFA 3OH9A 1HU0A 4OFHA 1KG4A 2JG6A 3F0ZA 1KO9A 4B22A 2I5WA 2JHNA 3CWUA 4EA5A 1NGNA 1N3AA 4E9FA 2OFKA 3N5NX 4EW0A 3G0QA 1KG6A 3IHOA 3CWAA 1PU8A 4EJYA 1PU6A 5AN4A 2YG8A 4OFAA 2XHIA 2OFIA 4OFEA 4EW4A 1KG3A 4AIAA 1ORNA 1WEGA 3OH6A 4B23A 1MUYA 1VRLA 1LWYA 1RRQA 3CW7A 1FN7A 1WEIA 5KN8A 2ABKA 1XG7A 3FHFA 3IH7A 3CWSA 2NOIA 4PIIA 4DK9A 1KG2A 4EVVA 4E9HA 2H56A 4UOBA 1EBMA 3I0WA 4YPRA 4AI4A 1MPGA 4HSBA 4YOQA 3KTUA 1YQMA 1YQRA 1KG7A 1DIZA 2NOFA 5KN9A 1P59A 2NOHA 4E9GA 1YQKA 1WEFA 4E9EA 1M3QA 4AI5A 3FSPA 3CWTA 1RRSA 1XQOA 3FHGA 1KQJA 5CHZA 1PU7A 4B21A 3I0XA 1P7MA 5DPKA 4B24A 3N0UA 3KNTA 1KG5A 2JHJA 1KEAA 1ORPA 1N3CA 1N39A 1MUNA 4YPHA 1LWVA 1PVSA 3D4VA 2NOBA 3OGDA 1MUDA 1NKUA 2NOEA 3CVSA 1M3HA 4EA4A 4EJZA
chains in the Genus database with same CATH superfamily
3OYFA 3S3MA 1LMZA 2NOLA 3F10A 2NOZA 3S6IA 1LWWA 3CVTA 1XQPA 2YG9A 2JPSA 1YQLA 3OS1A 4UNFA 3OH9A 1HU0A 4OFHA 1KG4A 2JG6A 3OYMA 3F0ZA 3OYHA 1KO9A 3OS0A 4B22A 2I5WA 2JHNA 3CWUA 4EA5A 1NGNA 1N3AA 4E9FA 2OFKA 3N5NX 4EW0A 2V75A 3G0QA 1KG6A 3IHOA 3OYBA 3OYJA 3CWAA 4IKFA 1PU8A 4EJYA 1PU6A 5AN4A 2YG8A 4OFAA 2XHIA 3OYNA 2OFIA 4OFEA 4EW4A 1KG3A 4AIAA 1ORNA 3OYDA 3L2RA 4BDZA 1WEGA 3OS2A 2W04A 3OYAA 3OH6A 4B23A 1MUYA 1VRLA 4BE1A 1LWYA 5FRNA 1RRQA 3CW7A 1FN7A 1WEIA 5KN8A 2ABKA 3L2QA 1XG7A 3FHFA 3OYEA 3IH7A 3VW4A 3CWSA 2NOIA 4PIIA 4DK9A 1KG2A 4EVVA 4E7LA 4E9HA 2H56A 4E7IA 4UOBA 1EBMA 3I0WA 4YPRA 3LCNA 4AI4A 1MPGA 4HSBA 4YOQA 3KTUA 3S3OA 1YQMA 4ZTFA 1YQRA 1KG7A 1DIZA 2NOFA 5KN9A 1P59A 2NOHA 3OYGA 4E9GA 1YQKA 1WEFA 4E9EA 3OYCA 1M3QA 4AI5A 3OYLA 3FSPA 3CWTA 1RRSA 1XQOA 3FHGA 4E7HA 3OY9A 1KQJA 5FRMA 5CHZA 3L2UA 1PU7A 4B21A 3NNQA 1P7MA 1U84A 3R2XC 3L2WA 3I0XA 4B24A 4E7KA 5DPKA 3N0UA 3KNTA 1KG5A 2JHJA 3OYIA 4E7JA 1KEAA 1ORPA 3L2VA 1N3CA 1N39A 1MUNA 5FROA 4BACA 3S3NA 4YPHA 1LWVA 1PVSA 3D4VA 4BE0A 4ZTJA 3OYKA 2NOBA 3OGDA 4NZGA 1MUDA 1NKUA 4BDYA 2NOEA 3CVSA 1M3HA 4BE2A 4EA4A 2W03A 4EJZA
chains in the Genus database with same CATH topology
1LMZA 2NOLA 3F10A 2NOZA 3S6IA 1LWWA 3CVTA 1XQPA 2YG9A 1YQLA 4UNFA 3OH9A 1HU0A 4OFHA 1KG4A 2JG6A 3F0ZA 1KO9A 4B22A 2I5WA 2JHNA 3CWUA 4EA5A 1NGNA 1N3AA 4E9FA 2OFKA 3N5NX 4EW0A 3G0QA 1KG6A 3IHOA 3CWAA 1PU8A 4EJYA 1PU6A 5AN4A 2YG8A 4OFAA 2XHIA 2OFIA 4OFEA 4EW4A 1KG3A 4AIAA 1ORNA 1WEGA 3OH6A 4B23A 1MUYA 1VRLA 1LWYA 1RRQA 3CW7A 1FN7A 1WEIA 5KN8A 2ABKA 1XG7A 3FHFA 3IH7A 3CWSA 2NOIA 4PIIA 4DK9A 1KG2A 4EVVA 4E9HA 2H56A 4UOBA 1EBMA 3I0WA 4YPRA 4AI4A 1MPGA 4HSBA 4YOQA 3KTUA 1YQMA 1YQRA 1KG7A 1DIZA 2NOFA 5KN9A 1P59A 2NOHA 4E9GA 1YQKA 1WEFA 4E9EA 1M3QA 4AI5A 3FSPA 3CWTA 1RRSA 1XQOA 3FHGA 1KQJA 5CHZA 1PU7A 4B21A 3I0XA 1P7MA 5DPKA 4B24A 3N0UA 3KNTA 1KG5A 2JHJA 1KEAA 1ORPA 1N3CA 1N39A 1MUNA 4YPHA 1LWVA 1PVSA 3D4VA 2NOBA 3OGDA 1MUDA 1NKUA 2NOEA 3CVSA 1M3HA 4EA4A 4EJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LMZ A;  2NOL A;  3F10 A;  2NOZ A;  3S6I A;  1LWW A;  3CVT A;  1XQP A;  2YG9 A;  1YQL A;  4UNF A;  3OH9 A;  1HU0 A;  4OFH A;  1KG4 A;  2JG6 A;  3F0Z A;  1KO9 A;  4B22 A;  2I5W A;  2JHN A;  3CWU A;  4EA5 A;  1NGN A;  1N3A A;  4E9F A;  2OFK A;  3N5N X;  4EW0 A;  3G0Q A;  1KG6 A;  3IHO A;  3CWA A;  1PU8 A;  4EJY A;  1PU6 A;  5AN4 A;  2YG8 A;  4OFA A;  2XHI A;  2OFI A;  4OFE A;  4EW4 A;  1KG3 A;  4AIA A;  1ORN A;  1WEG A;  3OH6 A;  4B23 A;  1MUY A;  1VRL A;  1LWY A;  1RRQ A;  3CW7 A;  1FN7 A;  1WEI A;  5KN8 A;  2ABK A;  1XG7 A;  3FHF A;  3IH7 A;  3CWS A;  2NOI A;  4PII A;  4DK9 A;  1KG2 A;  4EVV A;  4E9H A;  2H56 A;  4UOB A;  1EBM A;  3I0W A;  4YPR A;  4AI4 A;  1MPG A;  4HSB A;  4YOQ A;  3KTU A;  1YQM A;  1YQR A;  1KG7 A;  1DIZ A;  2NOF A;  5KN9 A;  1P59 A;  2NOH A;  4E9G A;  1YQK A;  1WEF A;  4E9E A;  1M3Q A;  4AI5 A;  3FSP A;  3CWT A;  1RRS A;  1XQO A;  3FHG A;  1KQJ A;  5CHZ A;  1PU7 A;  4B21 A;  3I0X A;  1P7M A;  5DPK A;  4B24 A;  3N0U A;  3KNT A;  1KG5 A;  2JHJ A;  1KEA A;  1ORP A;  1N3C A;  1N39 A;  1MUN A;  4YPH A;  1LWV A;  1PVS A;  3D4V A;  2NOB A;  3OGD A;  1MUD A;  1NKU A;  2NOE A;  3CVS A;  1M3H A;  4EA4 A;  4EJZ A; 
#chains in the Genus database with same CATH topology
 3OYF A;  3S3M A;  1LMZ A;  2NOL A;  3F10 A;  2NOZ A;  3S6I A;  1LWW A;  3CVT A;  1XQP A;  2YG9 A;  2JPS A;  1YQL A;  3OS1 A;  4UNF A;  3OH9 A;  1HU0 A;  4OFH A;  1KG4 A;  2JG6 A;  3OYM A;  3F0Z A;  3OYH A;  1KO9 A;  3OS0 A;  4B22 A;  2I5W A;  2JHN A;  3CWU A;  4EA5 A;  1NGN A;  1N3A A;  4E9F A;  2OFK A;  3N5N X;  4EW0 A;  2V75 A;  3G0Q A;  1KG6 A;  3IHO A;  3OYB A;  3OYJ A;  3CWA A;  4IKF A;  1PU8 A;  4EJY A;  1PU6 A;  5AN4 A;  2YG8 A;  4OFA A;  2XHI A;  3OYN A;  2OFI A;  4OFE A;  4EW4 A;  1KG3 A;  4AIA A;  1ORN A;  3OYD A;  3L2R A;  4BDZ A;  1WEG A;  3OS2 A;  2W04 A;  3OYA A;  3OH6 A;  4B23 A;  1MUY A;  1VRL A;  4BE1 A;  1LWY A;  5FRN A;  1RRQ A;  3CW7 A;  1FN7 A;  1WEI A;  5KN8 A;  2ABK A;  3L2Q A;  1XG7 A;  3FHF A;  3OYE A;  3IH7 A;  3VW4 A;  3CWS A;  2NOI A;  4PII A;  4DK9 A;  1KG2 A;  4EVV A;  4E7L A;  4E9H A;  2H56 A;  4E7I A;  4UOB A;  1EBM A;  3I0W A;  4YPR A;  3LCN A;  4AI4 A;  1MPG A;  4HSB A;  4YOQ A;  3KTU A;  3S3O A;  1YQM A;  4ZTF A;  1YQR A;  1KG7 A;  1DIZ A;  2NOF A;  5KN9 A;  1P59 A;  2NOH A;  3OYG A;  4E9G A;  1YQK A;  1WEF A;  4E9E A;  3OYC A;  1M3Q A;  4AI5 A;  3OYL A;  3FSP A;  3CWT A;  1RRS A;  1XQO A;  3FHG A;  4E7H A;  3OY9 A;  1KQJ A;  5FRM A;  5CHZ A;  3L2U A;  1PU7 A;  4B21 A;  3NNQ A;  1P7M A;  1U84 A;  3R2X C;  3L2W A;  3I0X A;  4B24 A;  4E7K A;  5DPK A;  3N0U A;  3KNT A;  1KG5 A;  2JHJ A;  3OYI A;  4E7J A;  1KEA A;  1ORP A;  3L2V A;  1N3C A;  1N39 A;  1MUN A;  5FRO A;  4BAC A;  3S3N A;  4YPH A;  1LWV A;  1PVS A;  3D4V A;  4BE0 A;  4ZTJ A;  3OYK A;  2NOB A;  3OGD A;  4NZG A;  1MUD A;  1NKU A;  4BDY A;  2NOE A;  3CVS A;  1M3H A;  4BE2 A;  4EA4 A;  2W03 A;  4EJZ A; 
#chains in the Genus database with same CATH homology
 1LMZ A;  2NOL A;  3F10 A;  2NOZ A;  3S6I A;  1LWW A;  3CVT A;  1XQP A;  2YG9 A;  1YQL A;  4UNF A;  3OH9 A;  1HU0 A;  4OFH A;  1KG4 A;  2JG6 A;  3F0Z A;  1KO9 A;  4B22 A;  2I5W A;  2JHN A;  3CWU A;  4EA5 A;  1NGN A;  1N3A A;  4E9F A;  2OFK A;  3N5N X;  4EW0 A;  3G0Q A;  1KG6 A;  3IHO A;  3CWA A;  1PU8 A;  4EJY A;  1PU6 A;  5AN4 A;  2YG8 A;  4OFA A;  2XHI A;  2OFI A;  4OFE A;  4EW4 A;  1KG3 A;  4AIA A;  1ORN A;  1WEG A;  3OH6 A;  4B23 A;  1MUY A;  1VRL A;  1LWY A;  1RRQ A;  3CW7 A;  1FN7 A;  1WEI A;  5KN8 A;  2ABK A;  1XG7 A;  3FHF A;  3IH7 A;  3CWS A;  2NOI A;  4PII A;  4DK9 A;  1KG2 A;  4EVV A;  4E9H A;  2H56 A;  4UOB A;  1EBM A;  3I0W A;  4YPR A;  4AI4 A;  1MPG A;  4HSB A;  4YOQ A;  3KTU A;  1YQM A;  1YQR A;  1KG7 A;  1DIZ A;  2NOF A;  5KN9 A;  1P59 A;  2NOH A;  4E9G A;  1YQK A;  1WEF A;  4E9E A;  1M3Q A;  4AI5 A;  3FSP A;  3CWT A;  1RRS A;  1XQO A;  3FHG A;  1KQJ A;  5CHZ A;  1PU7 A;  4B21 A;  3I0X A;  1P7M A;  5DPK A;  4B24 A;  3N0U A;  3KNT A;  1KG5 A;  2JHJ A;  1KEA A;  1ORP A;  1N3C A;  1N39 A;  1MUN A;  4YPH A;  1LWV A;  1PVS A;  3D4V A;  2NOB A;  3OGD A;  1MUD A;  1NKU A;  2NOE A;  3CVS A;  1M3H A;  4EA4 A;  4EJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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