2OFIA

Crystal structure of 3-methyladenine dna glycosylase i (tag) bound to dna/3ma
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
184
structure length
184
Chain Sequence
MQRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGCFCHPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*CP*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3'
publication title DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG).
pubmed doi rcsb
source organism Salmonella typhi
molecule tags 3-methyladenine dna glycosylase i/dna
total genus 61
structure length 184
sequence length 184
ec nomenclature
pdb deposition date 2007-01-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03352 Adenine_glyco Methyladenine glycosylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 2ofiA00
1KG7A 1LWWA 4OFHA 2NOBA 2NOEA 3S6IA 2JHNA 2JHJA 1XQOA 3F0ZA 1YQMA 1MUDA 4EJYA 1M3QA 1KQJA 1N3CA 1KG6A 3N5NX 4YOQA 4UNFA 2NOZA 1ORPA 3OH6A 1KG3A 4YPRA 2YG9A 1RRSA 4EA5A 4EW0A 3CVTA 4UOBA 3KTUA 5KN8A 3KNTA 3CWUA 2NOFA 1P7MA 4AIAA 4YPHA 1ORNA 4E9HA 3IH7A 2I5WA 1KG2A 3CWSA 3I0WA 3F10A 4EA4A 4E9GA 1DIZA 1RRQA 2NOIA 3IHOA 1XQPA 3CW7A 1KO9A 5KN9A 1N39A 1PVSA 3OH9A 3FHGA 4DK9A 4EVVA 3D4VA 2JG6A 1KG5A 1LWVA 2ABKA 4E9FA 2YG8A 1YQRA 4B24A 1NGNA 1LMZA 2OFKA 1LWYA 1YQKA 1M3HA 1EBMA 1PU7A 4B21A 4EJZA 4AI4A 1PU6A 1KEAA 3OGDA 1N3AA 1WEGA 1YQLA 3CWAA 5DPKA 4PIIA 1XG7A 2NOLA 3N0UA 1P59A 4OFEA 4OFAA 4B23A 1MUYA 5CHZA 3CWTA 3FHFA 1KG4A 3G0QA 2NOHA 1VRLA 5AN4A 1HU0A 1FN7A 4B22A 1WEIA 3FSPA 4HSBA 1MUNA 3I0XA 1PU8A 4AI5A 4E9EA 3CVSA 2XHIA 4EW4A 1WEFA 1NKUA 1MPGA 2OFIA 2H56A
chains in the Genus database with same CATH superfamily
1KG7A 1LWWA 3LCNA 4OFHA 2NOBA 2NOEA 3S6IA 3OYBA 2JHNA 2JHJA 1XQOA 3F0ZA 1YQMA 3R2XC 3L2UA 3VW4A 1MUDA 3OYIA 4EJYA 1M3QA 1KQJA 1N3CA 1KG6A 3N5NX 4YOQA 4UNFA 2NOZA 4E7HA 1ORPA 3OH6A 1KG3A 4YPRA 2YG9A 1RRSA 3OYKA 4EA5A 3OYEA 4EW0A 3S3OA 3CVTA 4UOBA 3OS0A 3KTUA 4BACA 5KN8A 3KNTA 2W03A 3CWUA 2NOFA 1P7MA 4AIAA 4YPHA 3OYCA 3OYNA 1ORNA 4E9HA 3IH7A 2I5WA 1KG2A 4BE2A 2JPSA 3CWSA 3I0WA 4NZGA 5FRNA 3F10A 3L2QA 4EA4A 3S3MA 3OYJA 3L2VA 4E9GA 3OYGA 1DIZA 3OYHA 1RRQA 2NOIA 3IHOA 5FROA 3OS2A 1XQPA 3CW7A 3OYLA 4ZTJA 1KO9A 5FRMA 5KN9A 1N39A 1PVSA 3OH9A 3FHGA 4DK9A 4EVVA 3D4VA 2JG6A 1KG5A 4E7IA 1LWVA 2ABKA 4E9FA 2YG8A 1YQRA 4B24A 1NGNA 1LMZA 2OFKA 1LWYA 1YQKA 1M3HA 1EBMA 1PU7A 4E7LA 3OYFA 4B21A 4EJZA 4AI4A 1PU6A 1KEAA 4BDYA 3OGDA 1N3AA 1WEGA 1YQLA 4IKFA 2W04A 3CWAA 4PIIA 5DPKA 1XG7A 2NOLA 3N0UA 1U84A 4ZTFA 1P59A 3OY9A 4OFAA 4OFEA 3L2WA 4B23A 1MUYA 5CHZA 3CWTA 3OYAA 3FHFA 1KG4A 3G0QA 2NOHA 4BDZA 1VRLA 5AN4A 1HU0A 1FN7A 3OS1A 4B22A 3L2RA 1WEIA 3OYDA 3FSPA 4HSBA 4E7KA 3S3NA 3OYMA 1MUNA 1PU8A 4AI5A 3I0XA 4E9EA 3CVSA 2XHIA 4EW4A 1WEFA 1NKUA 2V75A 4BE0A 4E7JA 1MPGA 4BE1A 3NNQA 2OFIA 2H56A
chains in the Genus database with same CATH topology
1KG7A 1LWWA 4OFHA 2NOBA 2NOEA 3S6IA 2JHNA 2JHJA 1XQOA 3F0ZA 1YQMA 1MUDA 4EJYA 1M3QA 1KQJA 1N3CA 1KG6A 3N5NX 4YOQA 4UNFA 2NOZA 1ORPA 3OH6A 1KG3A 4YPRA 2YG9A 1RRSA 4EA5A 4EW0A 3CVTA 4UOBA 3KTUA 5KN8A 3KNTA 3CWUA 2NOFA 1P7MA 4AIAA 4YPHA 1ORNA 4E9HA 3IH7A 2I5WA 1KG2A 3CWSA 3I0WA 3F10A 4EA4A 4E9GA 1DIZA 1RRQA 2NOIA 3IHOA 1XQPA 3CW7A 1KO9A 5KN9A 1N39A 1PVSA 3OH9A 3FHGA 4DK9A 4EVVA 3D4VA 2JG6A 1KG5A 1LWVA 2ABKA 4E9FA 2YG8A 1YQRA 4B24A 1NGNA 1LMZA 2OFKA 1LWYA 1YQKA 1M3HA 1EBMA 1PU7A 4B21A 4EJZA 4AI4A 1PU6A 1KEAA 3OGDA 1N3AA 1WEGA 1YQLA 3CWAA 5DPKA 4PIIA 1XG7A 2NOLA 3N0UA 1P59A 4OFEA 4OFAA 4B23A 1MUYA 5CHZA 3CWTA 3FHFA 1KG4A 3G0QA 2NOHA 1VRLA 5AN4A 1HU0A 1FN7A 4B22A 1WEIA 3FSPA 4HSBA 1MUNA 3I0XA 1PU8A 4AI5A 4E9EA 3CVSA 2XHIA 4EW4A 1WEFA 1NKUA 1MPGA 2OFIA 2H56A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KG7 A;  1LWW A;  4OFH A;  2NOB A;  2NOE A;  3S6I A;  2JHN A;  2JHJ A;  1XQO A;  3F0Z A;  1YQM A;  1MUD A;  4EJY A;  1M3Q A;  1KQJ A;  1N3C A;  1KG6 A;  3N5N X;  4YOQ A;  4UNF A;  2NOZ A;  1ORP A;  3OH6 A;  1KG3 A;  4YPR A;  2YG9 A;  1RRS A;  4EA5 A;  4EW0 A;  3CVT A;  4UOB A;  3KTU A;  5KN8 A;  3KNT A;  3CWU A;  2NOF A;  1P7M A;  4AIA A;  4YPH A;  1ORN A;  4E9H A;  3IH7 A;  2I5W A;  1KG2 A;  3CWS A;  3I0W A;  3F10 A;  4EA4 A;  4E9G A;  1DIZ A;  1RRQ A;  2NOI A;  3IHO A;  1XQP A;  3CW7 A;  1KO9 A;  5KN9 A;  1N39 A;  1PVS A;  3OH9 A;  3FHG A;  4DK9 A;  4EVV A;  3D4V A;  2JG6 A;  1KG5 A;  1LWV A;  2ABK A;  4E9F A;  2YG8 A;  1YQR A;  4B24 A;  1NGN A;  1LMZ A;  2OFK A;  1LWY A;  1YQK A;  1M3H A;  1EBM A;  1PU7 A;  4B21 A;  4EJZ A;  4AI4 A;  1PU6 A;  1KEA A;  3OGD A;  1N3A A;  1WEG A;  1YQL A;  3CWA A;  5DPK A;  4PII A;  1XG7 A;  2NOL A;  3N0U A;  1P59 A;  4OFE A;  4OFA A;  4B23 A;  1MUY A;  5CHZ A;  3CWT A;  3FHF A;  1KG4 A;  3G0Q A;  2NOH A;  1VRL A;  5AN4 A;  1HU0 A;  1FN7 A;  4B22 A;  1WEI A;  3FSP A;  4HSB A;  1MUN A;  3I0X A;  1PU8 A;  4AI5 A;  4E9E A;  3CVS A;  2XHI A;  4EW4 A;  1WEF A;  1NKU A;  1MPG A;  2OFI A;  2H56 A; 
#chains in the Genus database with same CATH topology
 1KG7 A;  1LWW A;  3LCN A;  4OFH A;  2NOB A;  2NOE A;  3S6I A;  3OYB A;  2JHN A;  2JHJ A;  1XQO A;  3F0Z A;  1YQM A;  3R2X C;  3L2U A;  3VW4 A;  1MUD A;  3OYI A;  4EJY A;  1M3Q A;  1KQJ A;  1N3C A;  1KG6 A;  3N5N X;  4YOQ A;  4UNF A;  2NOZ A;  4E7H A;  1ORP A;  3OH6 A;  1KG3 A;  4YPR A;  2YG9 A;  1RRS A;  3OYK A;  4EA5 A;  3OYE A;  4EW0 A;  3S3O A;  3CVT A;  4UOB A;  3OS0 A;  3KTU A;  4BAC A;  5KN8 A;  3KNT A;  2W03 A;  3CWU A;  2NOF A;  1P7M A;  4AIA A;  4YPH A;  3OYC A;  3OYN A;  1ORN A;  4E9H A;  3IH7 A;  2I5W A;  1KG2 A;  4BE2 A;  2JPS A;  3CWS A;  3I0W A;  4NZG A;  5FRN A;  3F10 A;  3L2Q A;  4EA4 A;  3S3M A;  3OYJ A;  3L2V A;  4E9G A;  3OYG A;  1DIZ A;  3OYH A;  1RRQ A;  2NOI A;  3IHO A;  5FRO A;  3OS2 A;  1XQP A;  3CW7 A;  3OYL A;  4ZTJ A;  1KO9 A;  5FRM A;  5KN9 A;  1N39 A;  1PVS A;  3OH9 A;  3FHG A;  4DK9 A;  4EVV A;  3D4V A;  2JG6 A;  1KG5 A;  4E7I A;  1LWV A;  2ABK A;  4E9F A;  2YG8 A;  1YQR A;  4B24 A;  1NGN A;  1LMZ A;  2OFK A;  1LWY A;  1YQK A;  1M3H A;  1EBM A;  1PU7 A;  4E7L A;  3OYF A;  4B21 A;  4EJZ A;  4AI4 A;  1PU6 A;  1KEA A;  4BDY A;  3OGD A;  1N3A A;  1WEG A;  1YQL A;  4IKF A;  2W04 A;  3CWA A;  4PII A;  5DPK A;  1XG7 A;  2NOL A;  3N0U A;  1U84 A;  4ZTF A;  1P59 A;  3OY9 A;  4OFA A;  4OFE A;  3L2W A;  4B23 A;  1MUY A;  5CHZ A;  3CWT A;  3OYA A;  3FHF A;  1KG4 A;  3G0Q A;  2NOH A;  4BDZ A;  1VRL A;  5AN4 A;  1HU0 A;  1FN7 A;  3OS1 A;  4B22 A;  3L2R A;  1WEI A;  3OYD A;  3FSP A;  4HSB A;  4E7K A;  3S3N A;  3OYM A;  1MUN A;  1PU8 A;  4AI5 A;  3I0X A;  4E9E A;  3CVS A;  2XHI A;  4EW4 A;  1WEF A;  1NKU A;  2V75 A;  4BE0 A;  4E7J A;  1MPG A;  4BE1 A;  3NNQ A;  2OFI A;  2H56 A; 
#chains in the Genus database with same CATH homology
 1KG7 A;  1LWW A;  4OFH A;  2NOB A;  2NOE A;  3S6I A;  2JHN A;  2JHJ A;  1XQO A;  3F0Z A;  1YQM A;  1MUD A;  4EJY A;  1M3Q A;  1KQJ A;  1N3C A;  1KG6 A;  3N5N X;  4YOQ A;  4UNF A;  2NOZ A;  1ORP A;  3OH6 A;  1KG3 A;  4YPR A;  2YG9 A;  1RRS A;  4EA5 A;  4EW0 A;  3CVT A;  4UOB A;  3KTU A;  5KN8 A;  3KNT A;  3CWU A;  2NOF A;  1P7M A;  4AIA A;  4YPH A;  1ORN A;  4E9H A;  3IH7 A;  2I5W A;  1KG2 A;  3CWS A;  3I0W A;  3F10 A;  4EA4 A;  4E9G A;  1DIZ A;  1RRQ A;  2NOI A;  3IHO A;  1XQP A;  3CW7 A;  1KO9 A;  5KN9 A;  1N39 A;  1PVS A;  3OH9 A;  3FHG A;  4DK9 A;  4EVV A;  3D4V A;  2JG6 A;  1KG5 A;  1LWV A;  2ABK A;  4E9F A;  2YG8 A;  1YQR A;  4B24 A;  1NGN A;  1LMZ A;  2OFK A;  1LWY A;  1YQK A;  1M3H A;  1EBM A;  1PU7 A;  4B21 A;  4EJZ A;  4AI4 A;  1PU6 A;  1KEA A;  3OGD A;  1N3A A;  1WEG A;  1YQL A;  3CWA A;  5DPK A;  4PII A;  1XG7 A;  2NOL A;  3N0U A;  1P59 A;  4OFE A;  4OFA A;  4B23 A;  1MUY A;  5CHZ A;  3CWT A;  3FHF A;  1KG4 A;  3G0Q A;  2NOH A;  1VRL A;  5AN4 A;  1HU0 A;  1FN7 A;  4B22 A;  1WEI A;  3FSP A;  4HSB A;  1MUN A;  3I0X A;  1PU8 A;  4AI5 A;  4E9E A;  3CVS A;  2XHI A;  4EW4 A;  1WEF A;  1NKU A;  1MPG A;  2OFI A;  2H56 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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