2OFIA

Crystal structure of 3-methyladenine dna glycosylase i (tag) bound to dna/3ma
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
184
structure length
184
Chain Sequence
MQRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGCFCHPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags 3-methyladenine dna glycosylase i/dna
source organism Salmonella typhi
publication title DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG).
pubmed doi rcsb
molecule keywords 5'-D(*CP*GP*GP*AP*CP*TP*(3DR)P*AP*CP*GP*GP*G)-3'
total genus 61
structure length 184
sequence length 184
ec nomenclature
pdb deposition date 2007-01-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03352 Adenine_glyco Methyladenine glycosylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 2ofiA00
1KG7A 3N0UA 4B21A 2OFIA 2NOIA 1PU6A 3CWAA 2JHNA 1EBMA 4EJYA 3D4VA 1XQPA 1YQLA 3I0WA 1WEGA 2I5WA 2NOEA 4UNFA 1MUYA 1XG7A 1NGNA 2NOBA 4B23A 1PVSA 4OFEA 1WEFA 3FHGA 3KTUA 2NOLA 2JHJA 4EA5A 2YG8A 1P59A 2NOZA 1XQOA 3F10A 3F0ZA 3FHFA 4B24A 1KG2A 1KG5A 1LMZA 3CWUA 1MUDA 1RRQA 4EA4A 4E9FA 5AN4A 4AI5A 3FSPA 2ABKA 1YQMA 1VRLA 2OFKA 1HU0A 3CVSA 3IHOA 2H56A 1N39A 3OH9A 3CVTA 1ORNA 4AI4A 2NOFA 2XHIA 3N5NX 4YPHA 3CWSA 4EW4A 1ORPA 3CWTA 1KO9A 3KNTA 4AIAA 1PU7A 4HSBA 2NOHA 1WEIA 1LWYA 2JG6A 3OGDA 4DK9A 4EVVA 1PU8A 3CW7A 4OFHA 3OH6A 5KN9A 1P7MA 4YPRA 1KEAA 3I0XA 5DPKA 1FN7A 4PIIA 1N3CA 4OFAA 3G0QA 1M3HA 1YQKA 1YQRA 1KQJA 3IH7A 1NKUA 5CHZA 1KG4A 4UOBA 1MUNA 1MPGA 4EW0A 5KN8A 4E9HA 4YOQA 3S6IA 4E9GA 1LWVA 1LWWA 2YG9A 1M3QA 1DIZA 1KG3A 1N3AA 4EJZA 1KG6A 4E9EA 4B22A 1RRSA
chains in the Genus database with same CATH superfamily
2V75A 3S3MA 4E7LA 3L2QA 1KG7A 3OS1A 3OS0A 2W03A 3N0UA 4B21A 2OFIA 5FRMA 2NOIA 1PU6A 3CWAA 2JHNA 1EBMA 4EJYA 4E7IA 3D4VA 1XQPA 1YQLA 3I0WA 1WEGA 2I5WA 3OYEA 2NOEA 4UNFA 1MUYA 3OYNA 1XG7A 3OYAA 3OYGA 1NGNA 2NOBA 3L2VA 4B23A 1PVSA 4OFEA 1WEFA 3FHGA 3KTUA 2NOLA 2JHJA 4EA5A 2YG8A 3OYHA 4ZTFA 1P59A 2NOZA 1XQOA 1U84A 5FRNA 3F10A 3F0ZA 3FHFA 3NNQA 4B24A 3OYMA 1KG2A 4E7KA 1KG5A 1LMZA 3CWUA 1MUDA 1RRQA 4EA4A 4E9FA 5AN4A 4BE1A 3OYDA 4AI5A 3FSPA 2ABKA 1YQMA 1VRLA 2OFKA 4ZTJA 1HU0A 3CVSA 3IHOA 2H56A 1N39A 3OH9A 3CVTA 1ORNA 4AI4A 2NOFA 4E7HA 3OY9A 2XHIA 3R2XC 3N5NX 4BACA 3S3OA 4YPHA 3CWSA 5FROA 4EW4A 1ORPA 3CWTA 1KO9A 3KNTA 4AIAA 1PU7A 2W04A 4HSBA 3S3NA 3VW4A 2NOHA 1WEIA 1LWYA 2JG6A 3OGDA 4DK9A 4EVVA 1PU8A 3OYJA 3CW7A 4OFHA 3OH6A 5KN9A 1P7MA 4YPRA 1KEAA 3I0XA 3OYBA 5DPKA 1FN7A 4NZGA 4PIIA 1N3CA 4OFAA 3OYKA 3G0QA 1M3HA 3L2WA 1YQKA 1RRSA 1YQRA 3OYIA 1KQJA 3IH7A 3L2RA 1NKUA 4BE2A 3LCNA 5CHZA 1KG4A 2JPSA 3OYCA 4UOBA 1MUNA 1MPGA 4EW0A 5KN8A 4E9HA 3L2UA 4YOQA 3S6IA 4BDYA 4E9GA 1LWVA 4BE0A 1LWWA 2YG9A 1M3QA 1DIZA 3OYFA 1KG3A 4E7JA 1N3AA 4BDZA 4IKFA 4EJZA 1KG6A 4E9EA 4B22A 3OYLA 3OS2A
chains in the Genus database with same CATH topology
1KG7A 3N0UA 4B21A 2OFIA 2NOIA 1PU6A 3CWAA 2JHNA 1EBMA 4EJYA 3D4VA 1XQPA 1YQLA 3I0WA 1WEGA 2I5WA 2NOEA 4UNFA 1MUYA 1XG7A 1NGNA 2NOBA 4B23A 1PVSA 4OFEA 1WEFA 3FHGA 3KTUA 2NOLA 2JHJA 4EA5A 2YG8A 1P59A 2NOZA 1XQOA 3F10A 3F0ZA 3FHFA 4B24A 1KG2A 1KG5A 1LMZA 3CWUA 1MUDA 1RRQA 4EA4A 4E9FA 5AN4A 4AI5A 3FSPA 2ABKA 1YQMA 1VRLA 2OFKA 1HU0A 3CVSA 3IHOA 2H56A 1N39A 3OH9A 3CVTA 1ORNA 4AI4A 2NOFA 2XHIA 3N5NX 4YPHA 3CWSA 4EW4A 1ORPA 3CWTA 1KO9A 3KNTA 4AIAA 1PU7A 4HSBA 2NOHA 1WEIA 1LWYA 2JG6A 3OGDA 4DK9A 4EVVA 1PU8A 3CW7A 4OFHA 3OH6A 5KN9A 1P7MA 4YPRA 1KEAA 3I0XA 5DPKA 1FN7A 4PIIA 1N3CA 4OFAA 3G0QA 1M3HA 1YQKA 1YQRA 1KQJA 3IH7A 1NKUA 5CHZA 1KG4A 4UOBA 1MUNA 1MPGA 4EW0A 5KN8A 4E9HA 4YOQA 3S6IA 4E9GA 1LWVA 1LWWA 2YG9A 1M3QA 1DIZA 1KG3A 1N3AA 4EJZA 1KG6A 4E9EA 4B22A 1RRSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KG7 A;  3N0U A;  4B21 A;  2OFI A;  2NOI A;  1PU6 A;  3CWA A;  2JHN A;  1EBM A;  4EJY A;  3D4V A;  1XQP A;  1YQL A;  3I0W A;  1WEG A;  2I5W A;  2NOE A;  4UNF A;  1MUY A;  1XG7 A;  1NGN A;  2NOB A;  4B23 A;  1PVS A;  4OFE A;  1WEF A;  3FHG A;  3KTU A;  2NOL A;  2JHJ A;  4EA5 A;  2YG8 A;  1P59 A;  2NOZ A;  1XQO A;  3F10 A;  3F0Z A;  3FHF A;  4B24 A;  1KG2 A;  1KG5 A;  1LMZ A;  3CWU A;  1MUD A;  1RRQ A;  4EA4 A;  4E9F A;  5AN4 A;  4AI5 A;  3FSP A;  2ABK A;  1YQM A;  1VRL A;  2OFK A;  1HU0 A;  3CVS A;  3IHO A;  2H56 A;  1N39 A;  3OH9 A;  3CVT A;  1ORN A;  4AI4 A;  2NOF A;  2XHI A;  3N5N X;  4YPH A;  3CWS A;  4EW4 A;  1ORP A;  3CWT A;  1KO9 A;  3KNT A;  4AIA A;  1PU7 A;  4HSB A;  2NOH A;  1WEI A;  1LWY A;  2JG6 A;  3OGD A;  4DK9 A;  4EVV A;  1PU8 A;  3CW7 A;  4OFH A;  3OH6 A;  5KN9 A;  1P7M A;  4YPR A;  1KEA A;  3I0X A;  5DPK A;  1FN7 A;  4PII A;  1N3C A;  4OFA A;  3G0Q A;  1M3H A;  1YQK A;  1YQR A;  1KQJ A;  3IH7 A;  1NKU A;  5CHZ A;  1KG4 A;  4UOB A;  1MUN A;  1MPG A;  4EW0 A;  5KN8 A;  4E9H A;  4YOQ A;  3S6I A;  4E9G A;  1LWV A;  1LWW A;  2YG9 A;  1M3Q A;  1DIZ A;  1KG3 A;  1N3A A;  4EJZ A;  1KG6 A;  4E9E A;  4B22 A;  1RRS A; 
#chains in the Genus database with same CATH topology
 2V75 A;  3S3M A;  4E7L A;  3L2Q A;  1KG7 A;  3OS1 A;  3OS0 A;  2W03 A;  3N0U A;  4B21 A;  2OFI A;  5FRM A;  2NOI A;  1PU6 A;  3CWA A;  2JHN A;  1EBM A;  4EJY A;  4E7I A;  3D4V A;  1XQP A;  1YQL A;  3I0W A;  1WEG A;  2I5W A;  3OYE A;  2NOE A;  4UNF A;  1MUY A;  3OYN A;  1XG7 A;  3OYA A;  3OYG A;  1NGN A;  2NOB A;  3L2V A;  4B23 A;  1PVS A;  4OFE A;  1WEF A;  3FHG A;  3KTU A;  2NOL A;  2JHJ A;  4EA5 A;  2YG8 A;  3OYH A;  4ZTF A;  1P59 A;  2NOZ A;  1XQO A;  1U84 A;  5FRN A;  3F10 A;  3F0Z A;  3FHF A;  3NNQ A;  4B24 A;  3OYM A;  1KG2 A;  4E7K A;  1KG5 A;  1LMZ A;  3CWU A;  1MUD A;  1RRQ A;  4EA4 A;  4E9F A;  5AN4 A;  4BE1 A;  3OYD A;  4AI5 A;  3FSP A;  2ABK A;  1YQM A;  1VRL A;  2OFK A;  4ZTJ A;  1HU0 A;  3CVS A;  3IHO A;  2H56 A;  1N39 A;  3OH9 A;  3CVT A;  1ORN A;  4AI4 A;  2NOF A;  4E7H A;  3OY9 A;  2XHI A;  3R2X C;  3N5N X;  4BAC A;  3S3O A;  4YPH A;  3CWS A;  5FRO A;  4EW4 A;  1ORP A;  3CWT A;  1KO9 A;  3KNT A;  4AIA A;  1PU7 A;  2W04 A;  4HSB A;  3S3N A;  3VW4 A;  2NOH A;  1WEI A;  1LWY A;  2JG6 A;  3OGD A;  4DK9 A;  4EVV A;  1PU8 A;  3OYJ A;  3CW7 A;  4OFH A;  3OH6 A;  5KN9 A;  1P7M A;  4YPR A;  1KEA A;  3I0X A;  3OYB A;  5DPK A;  1FN7 A;  4NZG A;  4PII A;  1N3C A;  4OFA A;  3OYK A;  3G0Q A;  1M3H A;  3L2W A;  1YQK A;  1RRS A;  1YQR A;  3OYI A;  1KQJ A;  3IH7 A;  3L2R A;  1NKU A;  4BE2 A;  3LCN A;  5CHZ A;  1KG4 A;  2JPS A;  3OYC A;  4UOB A;  1MUN A;  1MPG A;  4EW0 A;  5KN8 A;  4E9H A;  3L2U A;  4YOQ A;  3S6I A;  4BDY A;  4E9G A;  1LWV A;  4BE0 A;  1LWW A;  2YG9 A;  1M3Q A;  1DIZ A;  3OYF A;  1KG3 A;  4E7J A;  1N3A A;  4BDZ A;  4IKF A;  4EJZ A;  1KG6 A;  4E9E A;  4B22 A;  3OYL A;  3OS2 A; 
#chains in the Genus database with same CATH homology
 1KG7 A;  3N0U A;  4B21 A;  2OFI A;  2NOI A;  1PU6 A;  3CWA A;  2JHN A;  1EBM A;  4EJY A;  3D4V A;  1XQP A;  1YQL A;  3I0W A;  1WEG A;  2I5W A;  2NOE A;  4UNF A;  1MUY A;  1XG7 A;  1NGN A;  2NOB A;  4B23 A;  1PVS A;  4OFE A;  1WEF A;  3FHG A;  3KTU A;  2NOL A;  2JHJ A;  4EA5 A;  2YG8 A;  1P59 A;  2NOZ A;  1XQO A;  3F10 A;  3F0Z A;  3FHF A;  4B24 A;  1KG2 A;  1KG5 A;  1LMZ A;  3CWU A;  1MUD A;  1RRQ A;  4EA4 A;  4E9F A;  5AN4 A;  4AI5 A;  3FSP A;  2ABK A;  1YQM A;  1VRL A;  2OFK A;  1HU0 A;  3CVS A;  3IHO A;  2H56 A;  1N39 A;  3OH9 A;  3CVT A;  1ORN A;  4AI4 A;  2NOF A;  2XHI A;  3N5N X;  4YPH A;  3CWS A;  4EW4 A;  1ORP A;  3CWT A;  1KO9 A;  3KNT A;  4AIA A;  1PU7 A;  4HSB A;  2NOH A;  1WEI A;  1LWY A;  2JG6 A;  3OGD A;  4DK9 A;  4EVV A;  1PU8 A;  3CW7 A;  4OFH A;  3OH6 A;  5KN9 A;  1P7M A;  4YPR A;  1KEA A;  3I0X A;  5DPK A;  1FN7 A;  4PII A;  1N3C A;  4OFA A;  3G0Q A;  1M3H A;  1YQK A;  1YQR A;  1KQJ A;  3IH7 A;  1NKU A;  5CHZ A;  1KG4 A;  4UOB A;  1MUN A;  1MPG A;  4EW0 A;  5KN8 A;  4E9H A;  4YOQ A;  3S6I A;  4E9G A;  1LWV A;  1LWW A;  2YG9 A;  1M3Q A;  1DIZ A;  1KG3 A;  1N3A A;  4EJZ A;  1KG6 A;  4E9E A;  4B22 A;  1RRS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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