4B22A

Unprecedented sculpting of dna at abasic sites by dna glycosylase homolog mag2
Total Genus 70
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
205
structure length
205
Chain Sequence
b'DSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Sculpting of DNA at Abasic Sites by DNA Glycosylase Homolog Mag2.
pubmed doi rcsb
molecule keywords MAG2, DNA-3-METHYLADENINE GLYCOSYLASE 2
source organism Schizosaccharomyces pombe
molecule tags Hydrolase
total genus 70
structure length 205
sequence length 205
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 2012-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4b22A02
1.10.1670.40 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Endonuclease Iii, domain 2 4b22A01
4EW0A 3I0XA 1ORNA 1RRQA 1KG4A 4PIIA 2NOFA 1KG5A 5CHZA 3IHOA 4UOBA 3CWUA 1N3CA 5DPKA 4B22A 4E9EA 3KNTA 4B23A 1YQMA 1WEFA 1YQKA 2NOLA 4AI4A 3CVTA 1FN7A 5KN9A 1ORPA 3FHGA 2NOHA 1WEGA 2OFKA 4UNFA 2JG6A 4B24A 4EJYA 4AI5A 3OH6A 3S6IA 1M3HA 3N0UA 1KG6A 4AIAA 1PU6A 3FSPA 1MUDA 4EVVA 4OFHA 4E9HA 4EJZA 3FHFA 1N3AA 3D4VA 2ABKA 3CWAA 3OGDA 1HU0A 2XHIA 2YG9A 3N5NX 4EA5A 4E9GA 1DIZA 4YPRA 3CVSA 1P59A 4YPHA 2OFIA 3CW7A 1MPGA 1KO9A 1P7MA 4E9FA 5KN8A 1LWVA 4B21A 1MUYA 1XG7A 1PU8A 1KG7A 3OH9A 2NOIA 4OFAA 5AN4A 2I5WA 1NKUA 1KQJA 1LWWA 3G0QA 1KG2A 1KEAA 1XQOA 2JHJA 1WEIA 4DK9A 4YOQA 3I0WA 2JHNA 2H56A 3CWSA 1RRSA 2NOZA 1PU7A 1YQRA 3F0ZA 1KG3A 2YG8A 1PVSA 3IH7A 1N39A 3F10A 1YQLA 4EW4A 4HSBA 3CWTA 4OFEA 1VRLA 1M3QA 1EBMA 1XQPA 2NOBA 4EA4A 1MUNA 1LMZA 1NGNA 3KTUA 1LWYA 2NOEA
chains in the Genus database with same CATH superfamily
4EW0A 3OY9A 3OYDA 4ZTFA 3LCNA 3I0XA 4E7HA 5FRMA 1ORNA 1RRQA 3OS2A 3OS0A 3S3OA 3OYFA 1KG4A 4PIIA 3L2RA 2NOFA 1KG5A 3L2WA 3OYCA 5CHZA 3OYKA 3IHOA 4UOBA 3OYIA 3CWUA 1N3CA 3NNQA 2JPSA 4IKFA 5DPKA 4B22A 4E9EA 3KNTA 4B23A 1YQMA 1WEFA 4BE0A 1YQKA 2NOLA 4AI4A 4E7IA 3CVTA 1FN7A 5KN9A 1ORPA 3FHGA 1U84A 3S3MA 2NOHA 1WEGA 3L2QA 2OFKA 4UNFA 3OS1A 2JG6A 4B24A 4EJYA 2W04A 4E7JA 4AI5A 3OH6A 3OYEA 3S6IA 1M3HA 3N0UA 1KG6A 4AIAA 1PU6A 3FSPA 1MUDA 4EVVA 4E7KA 4BE2A 2W03A 4OFHA 4E9HA 4EJZA 3FHFA 4BACA 1N3AA 3D4VA 2ABKA 3CWAA 3OGDA 1HU0A 2XHIA 2YG9A 3N5NX 3L2VA 4EA5A 4E9GA 1DIZA 4YPRA 3CVSA 1P59A 4YPHA 2V75A 2OFIA 3CW7A 1MPGA 5FRNA 1KO9A 3L2UA 1P7MA 4E9FA 5KN8A 3OYGA 1LWVA 4B21A 1MUYA 1XG7A 4BDYA 1PU8A 1KG7A 3OH9A 2NOIA 4OFAA 5AN4A 2I5WA 1NKUA 4ZTJA 1KQJA 1LWWA 3G0QA 1KG2A 1KEAA 3OYHA 1XQOA 5FROA 2JHJA 1WEIA 4DK9A 3OYLA 4YOQA 3I0WA 2JHNA 2H56A 3CWSA 1RRSA 2NOZA 1PU7A 1YQRA 3F0ZA 1KG3A 2YG8A 1PVSA 3R2XC 4NZGA 3VW4A 3IH7A 1N39A 3F10A 1YQLA 4EW4A 4HSBA 3CWTA 4E7LA 4OFEA 1VRLA 1M3QA 1EBMA 1XQPA 3OYJA 2NOBA 4EA4A 1MUNA 3S3NA 1LMZA 1NGNA 3OYNA 3OYBA 3OYMA 3KTUA 1LWYA 3OYAA 4BE1A 4BDZA 2NOEA
chains in the Genus database with same CATH topology
4EW0A 3I0XA 1ORNA 1RRQA 1KG4A 4PIIA 2NOFA 1KG5A 5CHZA 3IHOA 4UOBA 3CWUA 1N3CA 5DPKA 4B22A 4E9EA 3KNTA 4B23A 1YQMA 1WEFA 1YQKA 2NOLA 4AI4A 3CVTA 1FN7A 5KN9A 1ORPA 3FHGA 2NOHA 1WEGA 2OFKA 4UNFA 2JG6A 4B24A 4EJYA 4AI5A 3OH6A 3S6IA 1M3HA 3N0UA 1KG6A 4AIAA 1PU6A 3FSPA 1MUDA 4EVVA 4OFHA 4E9HA 4EJZA 3FHFA 1N3AA 3D4VA 2ABKA 3CWAA 3OGDA 1HU0A 2XHIA 2YG9A 3N5NX 4EA5A 4E9GA 1DIZA 4YPRA 3CVSA 1P59A 4YPHA 2OFIA 3CW7A 1MPGA 1KO9A 1P7MA 4E9FA 5KN8A 1LWVA 4B21A 1MUYA 1XG7A 1PU8A 1KG7A 3OH9A 2NOIA 4OFAA 5AN4A 2I5WA 1NKUA 1KQJA 1LWWA 3G0QA 1KG2A 1KEAA 1XQOA 2JHJA 1WEIA 4DK9A 4YOQA 3I0WA 2JHNA 2H56A 3CWSA 1RRSA 2NOZA 1PU7A 1YQRA 3F0ZA 1KG3A 2YG8A 1PVSA 3IH7A 1N39A 3F10A 1YQLA 4EW4A 4HSBA 3CWTA 4OFEA 1VRLA 1M3QA 1EBMA 1XQPA 2NOBA 4EA4A 1MUNA 1LMZA 1NGNA 3KTUA 1LWYA 2NOEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EW0 A;  3I0X A;  1ORN A;  1RRQ A;  1KG4 A;  4PII A;  2NOF A;  1KG5 A;  5CHZ A;  3IHO A;  4UOB A;  3CWU A;  1N3C A;  5DPK A;  4B22 A;  4E9E A;  3KNT A;  4B23 A;  1YQM A;  1WEF A;  1YQK A;  2NOL A;  4AI4 A;  3CVT A;  1FN7 A;  5KN9 A;  1ORP A;  3FHG A;  2NOH A;  1WEG A;  2OFK A;  4UNF A;  2JG6 A;  4B24 A;  4EJY A;  4AI5 A;  3OH6 A;  3S6I A;  1M3H A;  3N0U A;  1KG6 A;  4AIA A;  1PU6 A;  3FSP A;  1MUD A;  4EVV A;  4OFH A;  4E9H A;  4EJZ A;  3FHF A;  1N3A A;  3D4V A;  2ABK A;  3CWA A;  3OGD A;  1HU0 A;  2XHI A;  2YG9 A;  3N5N X;  4EA5 A;  4E9G A;  1DIZ A;  4YPR A;  3CVS A;  1P59 A;  4YPH A;  2OFI A;  3CW7 A;  1MPG A;  1KO9 A;  1P7M A;  4E9F A;  5KN8 A;  1LWV A;  4B21 A;  1MUY A;  1XG7 A;  1PU8 A;  1KG7 A;  3OH9 A;  2NOI A;  4OFA A;  5AN4 A;  2I5W A;  1NKU A;  1KQJ A;  1LWW A;  3G0Q A;  1KG2 A;  1KEA A;  1XQO A;  2JHJ A;  1WEI A;  4DK9 A;  4YOQ A;  3I0W A;  2JHN A;  2H56 A;  3CWS A;  1RRS A;  2NOZ A;  1PU7 A;  1YQR A;  3F0Z A;  1KG3 A;  2YG8 A;  1PVS A;  3IH7 A;  1N39 A;  3F10 A;  1YQL A;  4EW4 A;  4HSB A;  3CWT A;  4OFE A;  1VRL A;  1M3Q A;  1EBM A;  1XQP A;  2NOB A;  4EA4 A;  1MUN A;  1LMZ A;  1NGN A;  3KTU A;  1LWY A;  2NOE A; 
#chains in the Genus database with same CATH topology
 4EW0 A;  3OY9 A;  3OYD A;  4ZTF A;  3LCN A;  3I0X A;  4E7H A;  5FRM A;  1ORN A;  1RRQ A;  3OS2 A;  3OS0 A;  3S3O A;  3OYF A;  1KG4 A;  4PII A;  3L2R A;  2NOF A;  1KG5 A;  3L2W A;  3OYC A;  5CHZ A;  3OYK A;  3IHO A;  4UOB A;  3OYI A;  3CWU A;  1N3C A;  3NNQ A;  2JPS A;  4IKF A;  5DPK A;  4B22 A;  4E9E A;  3KNT A;  4B23 A;  1YQM A;  1WEF A;  4BE0 A;  1YQK A;  2NOL A;  4AI4 A;  4E7I A;  3CVT A;  1FN7 A;  5KN9 A;  1ORP A;  3FHG A;  1U84 A;  3S3M A;  2NOH A;  1WEG A;  3L2Q A;  2OFK A;  4UNF A;  3OS1 A;  2JG6 A;  4B24 A;  4EJY A;  2W04 A;  4E7J A;  4AI5 A;  3OH6 A;  3OYE A;  3S6I A;  1M3H A;  3N0U A;  1KG6 A;  4AIA A;  1PU6 A;  3FSP A;  1MUD A;  4EVV A;  4E7K A;  4BE2 A;  2W03 A;  4OFH A;  4E9H A;  4EJZ A;  3FHF A;  4BAC A;  1N3A A;  3D4V A;  2ABK A;  3CWA A;  3OGD A;  1HU0 A;  2XHI A;  2YG9 A;  3N5N X;  3L2V A;  4EA5 A;  4E9G A;  1DIZ A;  4YPR A;  3CVS A;  1P59 A;  4YPH A;  2V75 A;  2OFI A;  3CW7 A;  1MPG A;  5FRN A;  1KO9 A;  3L2U A;  1P7M A;  4E9F A;  5KN8 A;  3OYG A;  1LWV A;  4B21 A;  1MUY A;  1XG7 A;  4BDY A;  1PU8 A;  1KG7 A;  3OH9 A;  2NOI A;  4OFA A;  5AN4 A;  2I5W A;  1NKU A;  4ZTJ A;  1KQJ A;  1LWW A;  3G0Q A;  1KG2 A;  1KEA A;  3OYH A;  1XQO A;  5FRO A;  2JHJ A;  1WEI A;  4DK9 A;  3OYL A;  4YOQ A;  3I0W A;  2JHN A;  2H56 A;  3CWS A;  1RRS A;  2NOZ A;  1PU7 A;  1YQR A;  3F0Z A;  1KG3 A;  2YG8 A;  1PVS A;  3R2X C;  4NZG A;  3VW4 A;  3IH7 A;  1N39 A;  3F10 A;  1YQL A;  4EW4 A;  4HSB A;  3CWT A;  4E7L A;  4OFE A;  1VRL A;  1M3Q A;  1EBM A;  1XQP A;  3OYJ A;  2NOB A;  4EA4 A;  1MUN A;  3S3N A;  1LMZ A;  1NGN A;  3OYN A;  3OYB A;  3OYM A;  3KTU A;  1LWY A;  3OYA A;  4BE1 A;  4BDZ A;  2NOE A; 
#chains in the Genus database with same CATH homology
 4EW0 A;  3I0X A;  1ORN A;  1RRQ A;  1KG4 A;  4PII A;  2NOF A;  1KG5 A;  5CHZ A;  3IHO A;  4UOB A;  3CWU A;  1N3C A;  5DPK A;  4B22 A;  4E9E A;  3KNT A;  4B23 A;  1YQM A;  1WEF A;  1YQK A;  2NOL A;  4AI4 A;  3CVT A;  1FN7 A;  5KN9 A;  1ORP A;  3FHG A;  2NOH A;  1WEG A;  2OFK A;  4UNF A;  2JG6 A;  4B24 A;  4EJY A;  4AI5 A;  3OH6 A;  3S6I A;  1M3H A;  3N0U A;  1KG6 A;  4AIA A;  1PU6 A;  3FSP A;  1MUD A;  4EVV A;  4OFH A;  4E9H A;  4EJZ A;  3FHF A;  1N3A A;  3D4V A;  2ABK A;  3CWA A;  3OGD A;  1HU0 A;  2XHI A;  2YG9 A;  3N5N X;  4EA5 A;  4E9G A;  1DIZ A;  4YPR A;  3CVS A;  1P59 A;  4YPH A;  2OFI A;  3CW7 A;  1MPG A;  1KO9 A;  1P7M A;  4E9F A;  5KN8 A;  1LWV A;  4B21 A;  1MUY A;  1XG7 A;  1PU8 A;  1KG7 A;  3OH9 A;  2NOI A;  4OFA A;  5AN4 A;  2I5W A;  1NKU A;  1KQJ A;  1LWW A;  3G0Q A;  1KG2 A;  1KEA A;  1XQO A;  2JHJ A;  1WEI A;  4DK9 A;  4YOQ A;  3I0W A;  2JHN A;  2H56 A;  3CWS A;  1RRS A;  2NOZ A;  1PU7 A;  1YQR A;  3F0Z A;  1KG3 A;  2YG8 A;  1PVS A;  3IH7 A;  1N39 A;  3F10 A;  1YQL A;  4EW4 A;  4HSB A;  3CWT A;  4OFE A;  1VRL A;  1M3Q A;  1EBM A;  1XQP A;  2NOB A;  4EA4 A;  1MUN A;  1LMZ A;  1NGN A;  3KTU A;  1LWY A;  2NOE A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...