4B22A

Unprecedented sculpting of dna at abasic sites by dna glycosylase homolog mag2
Total Genus 70
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
205
structure length
205
Chain Sequence
DSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
source organism Schizosaccharomyces pombe
publication title Sculpting of DNA at Abasic Sites by DNA Glycosylase Homolog Mag2.
pubmed doi rcsb
molecule keywords MAG2, DNA-3-METHYLADENINE GLYCOSYLASE 2
total genus 70
structure length 205
sequence length 205
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 2012-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4b22A02
1.10.1670.40 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Endonuclease Iii, domain 2 4b22A01
3FSPA 5CHZA 5KN8A 5KN9A 3CVSA 4EA5A 1PU7A 4EVVA 1YQRA 1P59A 1ORNA 1YQKA 2NOBA 1KO9A 1HU0A 1EBMA 1KEAA 3FHGA 3IH7A 4E9EA 2OFKA 4E9FA 3F10A 3IHOA 3N0UA 3CWTA 2NOHA 1PVSA 4EA4A 2I5WA 4OFAA 4HSBA 2XHIA 4B21A 4EJYA 1WEIA 4B24A 1M3QA 3CWUA 3I0WA 2NOZA 1ORPA 1KG7A 1MPGA 2NOLA 1LWVA 3FHFA 3CW7A 4E9GA 1PU8A 1WEFA 1MUDA 4YPHA 4EW4A 2JHJA 4AIAA 4OFEA 3CVTA 4UOBA 2NOIA 1KG4A 3KTUA 1YQMA 1RRQA 4B22A 1LWWA 1KQJA 1MUYA 3I0XA 1M3HA 4B23A 1VRLA 2YG9A 4PIIA 4EJZA 3D4VA 1N3AA 1LMZA 5AN4A 1WEGA 4OFHA 3OH6A 1KG6A 4UNFA 2JG6A 1MUNA 1KG2A 2H56A 1YQLA 5DPKA 1N3CA 1NKUA 1PU6A 3N5NX 3CWSA 3F0ZA 3KNTA 3OH9A 2JHNA 2YG8A 1NGNA 2NOFA 1XG7A 3G0QA 1XQOA 3CWAA 1LWYA 4AI4A 1KG3A 4DK9A 2NOEA 1RRSA 4YPRA 1N39A 1KG5A 4AI5A 2OFIA 1DIZA 4EW0A 3OGDA 1P7MA 1FN7A 3S6IA 1XQPA 2ABKA 4YOQA 4E9HA
chains in the Genus database with same CATH superfamily
3FSPA 5CHZA 5KN8A 5KN9A 3OYKA 3CVSA 4EA5A 3OS2A 1PU7A 4EVVA 1YQRA 1P59A 1ORNA 1YQKA 2NOBA 4BDYA 1KO9A 1HU0A 1EBMA 1KEAA 3FHGA 3IH7A 4NZGA 2JPSA 4E9EA 3L2WA 2OFKA 5FROA 4E9FA 3F10A 3R2XC 4BE0A 3IHOA 3N0UA 3CWTA 2NOHA 1PVSA 4BE1A 4EA4A 3OY9A 2I5WA 3OYFA 3VW4A 4OFAA 3S3OA 4HSBA 3OS1A 2XHIA 4B21A 3OYAA 4EJYA 3NNQA 1U84A 1WEIA 4B24A 3L2VA 1M3QA 3CWUA 3I0WA 4BACA 2NOZA 1ORPA 1KG7A 1MPGA 2V75A 3L2QA 4E7LA 4BDZA 2NOLA 2W03A 1LWVA 3FHFA 3CW7A 4E9GA 1PU8A 3OYBA 1WEFA 5FRNA 4E7IA 1MUDA 4YPHA 4EW4A 3OS0A 2JHJA 4AIAA 4OFEA 2W04A 3CVTA 4E7HA 4ZTJA 4UOBA 2NOIA 1KG4A 3KTUA 1YQMA 1RRQA 4B22A 1LWWA 1KQJA 1MUYA 3I0XA 1M3HA 4B23A 1VRLA 3OYNA 2YG9A 4PIIA 4EJZA 3D4VA 1N3AA 3OYDA 3OYGA 1LMZA 5AN4A 1WEGA 3OYIA 4OFHA 3OYCA 3OH6A 1KG6A 4UNFA 3L2UA 2JG6A 1MUNA 3OYHA 3LCNA 1KG2A 2H56A 1YQLA 5DPKA 3L2RA 1N3CA 3OYMA 1NKUA 1PU6A 3N5NX 3CWSA 4E7JA 3F0ZA 3KNTA 3OH9A 2JHNA 3OYEA 5FRMA 2YG8A 3S3MA 1NGNA 2NOFA 1XG7A 3G0QA 1XQOA 3CWAA 3S3NA 1LWYA 4BE2A 4AI4A 4E7KA 1KG3A 4DK9A 2NOEA 1RRSA 4YPRA 1N39A 3OYLA 1KG5A 4AI5A 2OFIA 4ZTFA 1DIZA 4EW0A 3OGDA 3OYJA 1P7MA 1FN7A 3S6IA 1XQPA 2ABKA 4YOQA 4E9HA 4IKFA
chains in the Genus database with same CATH topology
3FSPA 5CHZA 5KN8A 5KN9A 3CVSA 4EA5A 1PU7A 4EVVA 1YQRA 1P59A 1ORNA 1YQKA 2NOBA 1KO9A 1HU0A 1EBMA 1KEAA 3FHGA 3IH7A 4E9EA 2OFKA 4E9FA 3F10A 3IHOA 3N0UA 3CWTA 2NOHA 1PVSA 4EA4A 2I5WA 4OFAA 4HSBA 2XHIA 4B21A 4EJYA 1WEIA 4B24A 1M3QA 3CWUA 3I0WA 2NOZA 1ORPA 1KG7A 1MPGA 2NOLA 1LWVA 3FHFA 3CW7A 4E9GA 1PU8A 1WEFA 1MUDA 4YPHA 4EW4A 2JHJA 4AIAA 4OFEA 3CVTA 4UOBA 2NOIA 1KG4A 3KTUA 1YQMA 1RRQA 4B22A 1LWWA 1KQJA 1MUYA 3I0XA 1M3HA 4B23A 1VRLA 2YG9A 4PIIA 4EJZA 3D4VA 1N3AA 1LMZA 5AN4A 1WEGA 4OFHA 3OH6A 1KG6A 4UNFA 2JG6A 1MUNA 1KG2A 2H56A 1YQLA 5DPKA 1N3CA 1NKUA 1PU6A 3N5NX 3CWSA 3F0ZA 3KNTA 3OH9A 2JHNA 2YG8A 1NGNA 2NOFA 1XG7A 3G0QA 1XQOA 3CWAA 1LWYA 4AI4A 1KG3A 4DK9A 2NOEA 1RRSA 4YPRA 1N39A 1KG5A 4AI5A 2OFIA 1DIZA 4EW0A 3OGDA 1P7MA 1FN7A 3S6IA 1XQPA 2ABKA 4YOQA 4E9HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FSP A;  5CHZ A;  5KN8 A;  5KN9 A;  3CVS A;  4EA5 A;  1PU7 A;  4EVV A;  1YQR A;  1P59 A;  1ORN A;  1YQK A;  2NOB A;  1KO9 A;  1HU0 A;  1EBM A;  1KEA A;  3FHG A;  3IH7 A;  4E9E A;  2OFK A;  4E9F A;  3F10 A;  3IHO A;  3N0U A;  3CWT A;  2NOH A;  1PVS A;  4EA4 A;  2I5W A;  4OFA A;  4HSB A;  2XHI A;  4B21 A;  4EJY A;  1WEI A;  4B24 A;  1M3Q A;  3CWU A;  3I0W A;  2NOZ A;  1ORP A;  1KG7 A;  1MPG A;  2NOL A;  1LWV A;  3FHF A;  3CW7 A;  4E9G A;  1PU8 A;  1WEF A;  1MUD A;  4YPH A;  4EW4 A;  2JHJ A;  4AIA A;  4OFE A;  3CVT A;  4UOB A;  2NOI A;  1KG4 A;  3KTU A;  1YQM A;  1RRQ A;  4B22 A;  1LWW A;  1KQJ A;  1MUY A;  3I0X A;  1M3H A;  4B23 A;  1VRL A;  2YG9 A;  4PII A;  4EJZ A;  3D4V A;  1N3A A;  1LMZ A;  5AN4 A;  1WEG A;  4OFH A;  3OH6 A;  1KG6 A;  4UNF A;  2JG6 A;  1MUN A;  1KG2 A;  2H56 A;  1YQL A;  5DPK A;  1N3C A;  1NKU A;  1PU6 A;  3N5N X;  3CWS A;  3F0Z A;  3KNT A;  3OH9 A;  2JHN A;  2YG8 A;  1NGN A;  2NOF A;  1XG7 A;  3G0Q A;  1XQO A;  3CWA A;  1LWY A;  4AI4 A;  1KG3 A;  4DK9 A;  2NOE A;  1RRS A;  4YPR A;  1N39 A;  1KG5 A;  4AI5 A;  2OFI A;  1DIZ A;  4EW0 A;  3OGD A;  1P7M A;  1FN7 A;  3S6I A;  1XQP A;  2ABK A;  4YOQ A;  4E9H A; 
#chains in the Genus database with same CATH topology
 3FSP A;  5CHZ A;  5KN8 A;  5KN9 A;  3OYK A;  3CVS A;  4EA5 A;  3OS2 A;  1PU7 A;  4EVV A;  1YQR A;  1P59 A;  1ORN A;  1YQK A;  2NOB A;  4BDY A;  1KO9 A;  1HU0 A;  1EBM A;  1KEA A;  3FHG A;  3IH7 A;  4NZG A;  2JPS A;  4E9E A;  3L2W A;  2OFK A;  5FRO A;  4E9F A;  3F10 A;  3R2X C;  4BE0 A;  3IHO A;  3N0U A;  3CWT A;  2NOH A;  1PVS A;  4BE1 A;  4EA4 A;  3OY9 A;  2I5W A;  3OYF A;  3VW4 A;  4OFA A;  3S3O A;  4HSB A;  3OS1 A;  2XHI A;  4B21 A;  3OYA A;  4EJY A;  3NNQ A;  1U84 A;  1WEI A;  4B24 A;  3L2V A;  1M3Q A;  3CWU A;  3I0W A;  4BAC A;  2NOZ A;  1ORP A;  1KG7 A;  1MPG A;  2V75 A;  3L2Q A;  4E7L A;  4BDZ A;  2NOL A;  2W03 A;  1LWV A;  3FHF A;  3CW7 A;  4E9G A;  1PU8 A;  3OYB A;  1WEF A;  5FRN A;  4E7I A;  1MUD A;  4YPH A;  4EW4 A;  3OS0 A;  2JHJ A;  4AIA A;  4OFE A;  2W04 A;  3CVT A;  4E7H A;  4ZTJ A;  4UOB A;  2NOI A;  1KG4 A;  3KTU A;  1YQM A;  1RRQ A;  4B22 A;  1LWW A;  1KQJ A;  1MUY A;  3I0X A;  1M3H A;  4B23 A;  1VRL A;  3OYN A;  2YG9 A;  4PII A;  4EJZ A;  3D4V A;  1N3A A;  3OYD A;  3OYG A;  1LMZ A;  5AN4 A;  1WEG A;  3OYI A;  4OFH A;  3OYC A;  3OH6 A;  1KG6 A;  4UNF A;  3L2U A;  2JG6 A;  1MUN A;  3OYH A;  3LCN A;  1KG2 A;  2H56 A;  1YQL A;  5DPK A;  3L2R A;  1N3C A;  3OYM A;  1NKU A;  1PU6 A;  3N5N X;  3CWS A;  4E7J A;  3F0Z A;  3KNT A;  3OH9 A;  2JHN A;  3OYE A;  5FRM A;  2YG8 A;  3S3M A;  1NGN A;  2NOF A;  1XG7 A;  3G0Q A;  1XQO A;  3CWA A;  3S3N A;  1LWY A;  4BE2 A;  4AI4 A;  4E7K A;  1KG3 A;  4DK9 A;  2NOE A;  1RRS A;  4YPR A;  1N39 A;  3OYL A;  1KG5 A;  4AI5 A;  2OFI A;  4ZTF A;  1DIZ A;  4EW0 A;  3OGD A;  3OYJ A;  1P7M A;  1FN7 A;  3S6I A;  1XQP A;  2ABK A;  4YOQ A;  4E9H A;  4IKF A; 
#chains in the Genus database with same CATH homology
 3FSP A;  5CHZ A;  5KN8 A;  5KN9 A;  3CVS A;  4EA5 A;  1PU7 A;  4EVV A;  1YQR A;  1P59 A;  1ORN A;  1YQK A;  2NOB A;  1KO9 A;  1HU0 A;  1EBM A;  1KEA A;  3FHG A;  3IH7 A;  4E9E A;  2OFK A;  4E9F A;  3F10 A;  3IHO A;  3N0U A;  3CWT A;  2NOH A;  1PVS A;  4EA4 A;  2I5W A;  4OFA A;  4HSB A;  2XHI A;  4B21 A;  4EJY A;  1WEI A;  4B24 A;  1M3Q A;  3CWU A;  3I0W A;  2NOZ A;  1ORP A;  1KG7 A;  1MPG A;  2NOL A;  1LWV A;  3FHF A;  3CW7 A;  4E9G A;  1PU8 A;  1WEF A;  1MUD A;  4YPH A;  4EW4 A;  2JHJ A;  4AIA A;  4OFE A;  3CVT A;  4UOB A;  2NOI A;  1KG4 A;  3KTU A;  1YQM A;  1RRQ A;  4B22 A;  1LWW A;  1KQJ A;  1MUY A;  3I0X A;  1M3H A;  4B23 A;  1VRL A;  2YG9 A;  4PII A;  4EJZ A;  3D4V A;  1N3A A;  1LMZ A;  5AN4 A;  1WEG A;  4OFH A;  3OH6 A;  1KG6 A;  4UNF A;  2JG6 A;  1MUN A;  1KG2 A;  2H56 A;  1YQL A;  5DPK A;  1N3C A;  1NKU A;  1PU6 A;  3N5N X;  3CWS A;  3F0Z A;  3KNT A;  3OH9 A;  2JHN A;  2YG8 A;  1NGN A;  2NOF A;  1XG7 A;  3G0Q A;  1XQO A;  3CWA A;  1LWY A;  4AI4 A;  1KG3 A;  4DK9 A;  2NOE A;  1RRS A;  4YPR A;  1N39 A;  1KG5 A;  4AI5 A;  2OFI A;  1DIZ A;  4EW0 A;  3OGD A;  1P7M A;  1FN7 A;  3S6I A;  1XQP A;  2ABK A;  4YOQ A;  4E9H A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...