1KG6A

Crystal structure of the k142r mutant of e.coli muty (core fragment)
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
224
structure length
224
Chain Sequence
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVRRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Escherichia coli
publication title Analysis of the E.coli MutY DNA glycosylase structure and function by site-directed mutagenesis
rcsb
molecule keywords A/G-specific adenine glycosylase
total genus 78
structure length 224
sequence length 224
ec nomenclature ec 3.2.2.31: Adenine glycosylase.
pdb deposition date 2001-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF10576 EndIII_4Fe-2S Iron-sulfur binding domain of endonuclease III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1kg6A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1kg6A01
3N0UA 1LWWA 4B22A 1YQLA 1YQMA 3FHFA 5AN4A 1N3CA 4PIIA 4AIAA 2NOBA 1KG6A 1P7MA 3CWAA 2YG9A 4UOBA 2H56A 2NOFA 4B23A 4OFEA 2OFIA 1MUDA 2NOZA 1MPGA 3I0WA 4B24A 4E9HA 4DK9A 3KTUA 3F0ZA 4EJZA 4B21A 3G0QA 1HU0A 1WEIA 3I0XA 4AI5A 1KG7A 5DPKA 1KG3A 1LWVA 4AI4A 4EA5A 3FSPA 1XQOA 3CVSA 4YOQA 3OGDA 5KN8A 2ABKA 3OH6A 3S6IA 3IHOA 1ORPA 1KG2A 3OH9A 4EJYA 4HSBA 3CVTA 3FHGA 1M3HA 1KG4A 1YQRA 3F10A 5KN9A 2JHNA 4EVVA 1P59A 1PU8A 2NOEA 1N3AA 4OFHA 1RRSA 2NOHA 4EA4A 1KEAA 2YG8A 1FN7A 1PU7A 1KO9A 4EW4A 3KNTA 4YPHA 2NOLA 4OFAA 1WEFA 1NGNA 1N39A 1PVSA 3D4VA 4E9FA 1XG7A 4UNFA 1MUYA 3CWUA 3N5NX 1EBMA 5CHZA 1LWYA 1VRLA 2OFKA 1RRQA 3CWTA 1KG5A 4EW0A 1MUNA 1NKUA 1WEGA 1M3QA 4E9GA 3CWSA 2XHIA 1KQJA 3IH7A 1PU6A 2JG6A 3CW7A 2I5WA 2JHJA 4E9EA 1ORNA 1LMZA 1DIZA 4YPRA 2NOIA 1YQKA 1XQPA
chains in the Genus database with same CATH superfamily
3OYMA 4BE2A 3N0UA 1LWWA 4BE1A 3OS0A 4B22A 1YQLA 1YQMA 3FHFA 5AN4A 1N3CA 4PIIA 4E7IA 4AIAA 4E7HA 2NOBA 1KG6A 1P7MA 3CWAA 3S3MA 2YG9A 4UOBA 2H56A 2NOFA 4B23A 4OFEA 3S3OA 2OFIA 3OYJA 1MUDA 2NOZA 1MPGA 3I0WA 2W04A 4B24A 3OYCA 4E9HA 4NZGA 4DK9A 3L2VA 3KTUA 3F0ZA 2JPSA 3OYAA 3G0QA 3L2WA 1WEIA 3OYNA 4B21A 4BE0A 1HU0A 4EJZA 3L2UA 3I0XA 5FRNA 4AI5A 1KG7A 5DPKA 1KG3A 1LWVA 4AI4A 4EA5A 3R2XC 3FSPA 1XQOA 3CVSA 4YOQA 3OGDA 5KN8A 2ABKA 4BACA 4E7LA 3OH6A 3S6IA 3IHOA 3OYEA 1ORPA 1KG2A 3OH9A 5FRMA 3OYFA 4EJYA 4HSBA 2W03A 3CVTA 3OY9A 3FHGA 1M3HA 1KG4A 3L2QA 1YQRA 3F10A 5KN9A 2JHNA 4EVVA 1P59A 1PU8A 4ZTJA 3LCNA 2NOEA 4IKFA 1N3AA 4OFHA 1RRSA 2NOHA 4EA4A 1KEAA 2YG8A 1FN7A 1PU7A 4E7KA 1KO9A 4EW4A 4ZTFA 3KNTA 4BDZA 4YPHA 2NOLA 3VW4A 4OFAA 1WEFA 1NGNA 1N39A 1PVSA 3D4VA 4E9FA 1XG7A 4UNFA 1MUYA 3CWUA 3N5NX 1EBMA 5CHZA 1LWYA 1VRLA 2OFKA 1RRQA 3NNQA 3OYGA 1U84A 3CWTA 1KG5A 3OS1A 4EW0A 2V75A 5FROA 3OYDA 1MUNA 3OYLA 1NKUA 1WEGA 3OYIA 3L2RA 4E9GA 1M3QA 3CWSA 3OYHA 4E7JA 2XHIA 1KQJA 3IH7A 4BDYA 1PU6A 2JG6A 3CW7A 3OS2A 3OYKA 2I5WA 3OYBA 2JHJA 4E9EA 1ORNA 1LMZA 1DIZA 4YPRA 2NOIA 1YQKA 3S3NA 1XQPA
chains in the Genus database with same CATH topology
3N0UA 1LWWA 4B22A 1YQLA 1YQMA 3FHFA 5AN4A 1N3CA 4PIIA 4AIAA 2NOBA 1KG6A 1P7MA 3CWAA 2YG9A 4UOBA 2H56A 2NOFA 4B23A 4OFEA 2OFIA 1MUDA 2NOZA 1MPGA 3I0WA 4B24A 4E9HA 4DK9A 3KTUA 3F0ZA 4EJZA 4B21A 3G0QA 1HU0A 1WEIA 3I0XA 4AI5A 1KG7A 5DPKA 1KG3A 1LWVA 4AI4A 4EA5A 3FSPA 1XQOA 3CVSA 4YOQA 3OGDA 5KN8A 2ABKA 3OH6A 3S6IA 3IHOA 1ORPA 1KG2A 3OH9A 4EJYA 4HSBA 3CVTA 3FHGA 1M3HA 1KG4A 1YQRA 3F10A 5KN9A 2JHNA 4EVVA 1P59A 1PU8A 2NOEA 1N3AA 4OFHA 1RRSA 2NOHA 4EA4A 1KEAA 2YG8A 1FN7A 1PU7A 1KO9A 4EW4A 3KNTA 4YPHA 2NOLA 4OFAA 1WEFA 1NGNA 1N39A 1PVSA 3D4VA 4E9FA 1XG7A 4UNFA 1MUYA 3CWUA 3N5NX 1EBMA 5CHZA 1LWYA 1VRLA 2OFKA 1RRQA 3CWTA 1KG5A 4EW0A 1MUNA 1NKUA 1WEGA 1M3QA 4E9GA 3CWSA 2XHIA 1KQJA 3IH7A 1PU6A 2JG6A 3CW7A 2I5WA 2JHJA 4E9EA 1ORNA 1LMZA 1DIZA 4YPRA 2NOIA 1YQKA 1XQPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N0U A;  1LWW A;  4B22 A;  1YQL A;  1YQM A;  3FHF A;  5AN4 A;  1N3C A;  4PII A;  4AIA A;  2NOB A;  1KG6 A;  1P7M A;  3CWA A;  2YG9 A;  4UOB A;  2H56 A;  2NOF A;  4B23 A;  4OFE A;  2OFI A;  1MUD A;  2NOZ A;  1MPG A;  3I0W A;  4B24 A;  4E9H A;  4DK9 A;  3KTU A;  3F0Z A;  4EJZ A;  4B21 A;  3G0Q A;  1HU0 A;  1WEI A;  3I0X A;  4AI5 A;  1KG7 A;  5DPK A;  1KG3 A;  1LWV A;  4AI4 A;  4EA5 A;  3FSP A;  1XQO A;  3CVS A;  4YOQ A;  3OGD A;  5KN8 A;  2ABK A;  3OH6 A;  3S6I A;  3IHO A;  1ORP A;  1KG2 A;  3OH9 A;  4EJY A;  4HSB A;  3CVT A;  3FHG A;  1M3H A;  1KG4 A;  1YQR A;  3F10 A;  5KN9 A;  2JHN A;  4EVV A;  1P59 A;  1PU8 A;  2NOE A;  1N3A A;  4OFH A;  1RRS A;  2NOH A;  4EA4 A;  1KEA A;  2YG8 A;  1FN7 A;  1PU7 A;  1KO9 A;  4EW4 A;  3KNT A;  4YPH A;  2NOL A;  4OFA A;  1WEF A;  1NGN A;  1N39 A;  1PVS A;  3D4V A;  4E9F A;  1XG7 A;  4UNF A;  1MUY A;  3CWU A;  3N5N X;  1EBM A;  5CHZ A;  1LWY A;  1VRL A;  2OFK A;  1RRQ A;  3CWT A;  1KG5 A;  4EW0 A;  1MUN A;  1NKU A;  1WEG A;  1M3Q A;  4E9G A;  3CWS A;  2XHI A;  1KQJ A;  3IH7 A;  1PU6 A;  2JG6 A;  3CW7 A;  2I5W A;  2JHJ A;  4E9E A;  1ORN A;  1LMZ A;  1DIZ A;  4YPR A;  2NOI A;  1YQK A;  1XQP A; 
#chains in the Genus database with same CATH topology
 3OYM A;  4BE2 A;  3N0U A;  1LWW A;  4BE1 A;  3OS0 A;  4B22 A;  1YQL A;  1YQM A;  3FHF A;  5AN4 A;  1N3C A;  4PII A;  4E7I A;  4AIA A;  4E7H A;  2NOB A;  1KG6 A;  1P7M A;  3CWA A;  3S3M A;  2YG9 A;  4UOB A;  2H56 A;  2NOF A;  4B23 A;  4OFE A;  3S3O A;  2OFI A;  3OYJ A;  1MUD A;  2NOZ A;  1MPG A;  3I0W A;  2W04 A;  4B24 A;  3OYC A;  4E9H A;  4NZG A;  4DK9 A;  3L2V A;  3KTU A;  3F0Z A;  2JPS A;  3OYA A;  3G0Q A;  3L2W A;  1WEI A;  3OYN A;  4B21 A;  4BE0 A;  1HU0 A;  4EJZ A;  3L2U A;  3I0X A;  5FRN A;  4AI5 A;  1KG7 A;  5DPK A;  1KG3 A;  1LWV A;  4AI4 A;  4EA5 A;  3R2X C;  3FSP A;  1XQO A;  3CVS A;  4YOQ A;  3OGD A;  5KN8 A;  2ABK A;  4BAC A;  4E7L A;  3OH6 A;  3S6I A;  3IHO A;  3OYE A;  1ORP A;  1KG2 A;  3OH9 A;  5FRM A;  3OYF A;  4EJY A;  4HSB A;  2W03 A;  3CVT A;  3OY9 A;  3FHG A;  1M3H A;  1KG4 A;  3L2Q A;  1YQR A;  3F10 A;  5KN9 A;  2JHN A;  4EVV A;  1P59 A;  1PU8 A;  4ZTJ A;  3LCN A;  2NOE A;  4IKF A;  1N3A A;  4OFH A;  1RRS A;  2NOH A;  4EA4 A;  1KEA A;  2YG8 A;  1FN7 A;  1PU7 A;  4E7K A;  1KO9 A;  4EW4 A;  4ZTF A;  3KNT A;  4BDZ A;  4YPH A;  2NOL A;  3VW4 A;  4OFA A;  1WEF A;  1NGN A;  1N39 A;  1PVS A;  3D4V A;  4E9F A;  1XG7 A;  4UNF A;  1MUY A;  3CWU A;  3N5N X;  1EBM A;  5CHZ A;  1LWY A;  1VRL A;  2OFK A;  1RRQ A;  3NNQ A;  3OYG A;  1U84 A;  3CWT A;  1KG5 A;  3OS1 A;  4EW0 A;  2V75 A;  5FRO A;  3OYD A;  1MUN A;  3OYL A;  1NKU A;  1WEG A;  3OYI A;  3L2R A;  4E9G A;  1M3Q A;  3CWS A;  3OYH A;  4E7J A;  2XHI A;  1KQJ A;  3IH7 A;  4BDY A;  1PU6 A;  2JG6 A;  3CW7 A;  3OS2 A;  3OYK A;  2I5W A;  3OYB A;  2JHJ A;  4E9E A;  1ORN A;  1LMZ A;  1DIZ A;  4YPR A;  2NOI A;  1YQK A;  3S3N A;  1XQP A; 
#chains in the Genus database with same CATH homology
 3N0U A;  1LWW A;  4B22 A;  1YQL A;  1YQM A;  3FHF A;  5AN4 A;  1N3C A;  4PII A;  4AIA A;  2NOB A;  1KG6 A;  1P7M A;  3CWA A;  2YG9 A;  4UOB A;  2H56 A;  2NOF A;  4B23 A;  4OFE A;  2OFI A;  1MUD A;  2NOZ A;  1MPG A;  3I0W A;  4B24 A;  4E9H A;  4DK9 A;  3KTU A;  3F0Z A;  4EJZ A;  4B21 A;  3G0Q A;  1HU0 A;  1WEI A;  3I0X A;  4AI5 A;  1KG7 A;  5DPK A;  1KG3 A;  1LWV A;  4AI4 A;  4EA5 A;  3FSP A;  1XQO A;  3CVS A;  4YOQ A;  3OGD A;  5KN8 A;  2ABK A;  3OH6 A;  3S6I A;  3IHO A;  1ORP A;  1KG2 A;  3OH9 A;  4EJY A;  4HSB A;  3CVT A;  3FHG A;  1M3H A;  1KG4 A;  1YQR A;  3F10 A;  5KN9 A;  2JHN A;  4EVV A;  1P59 A;  1PU8 A;  2NOE A;  1N3A A;  4OFH A;  1RRS A;  2NOH A;  4EA4 A;  1KEA A;  2YG8 A;  1FN7 A;  1PU7 A;  1KO9 A;  4EW4 A;  3KNT A;  4YPH A;  2NOL A;  4OFA A;  1WEF A;  1NGN A;  1N39 A;  1PVS A;  3D4V A;  4E9F A;  1XG7 A;  4UNF A;  1MUY A;  3CWU A;  3N5N X;  1EBM A;  5CHZ A;  1LWY A;  1VRL A;  2OFK A;  1RRQ A;  3CWT A;  1KG5 A;  4EW0 A;  1MUN A;  1NKU A;  1WEG A;  1M3Q A;  4E9G A;  3CWS A;  2XHI A;  1KQJ A;  3IH7 A;  1PU6 A;  2JG6 A;  3CW7 A;  2I5W A;  2JHJ A;  4E9E A;  1ORN A;  1LMZ A;  1DIZ A;  4YPR A;  2NOI A;  1YQK A;  1XQP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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