1KG6A

Crystal structure of the k142r mutant of e.coli muty (core fragment)
Total Genus 78
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
224
structure length
224
Chain Sequence
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVRRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords A/G-specific adenine glycosylase
publication title Analysis of the E.coli MutY DNA glycosylase structure and function by site-directed mutagenesis
rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 78
structure length 224
sequence length 224
ec nomenclature ec 3.2.2.31: Adenine glycosylase.
pdb deposition date 2001-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF10576 EndIII_4Fe-2S Iron-sulfur binding domain of endonuclease III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1kg6A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1kg6A01
1RRSA 2XHIA 1LWWA 3OH9A 4OFAA 1P7MA 4E9GA 4EVVA 1WEIA 3FHFA 2H56A 3OH6A 1ORNA 2ABKA 3I0WA 4DK9A 4B22A 3KTUA 4HSBA 1N39A 4B23A 1KEAA 4YOQA 2NOEA 1WEGA 1N3AA 1P59A 4EW4A 3D4VA 1LWVA 4AI4A 1LMZA 3FHGA 4YPRA 3OGDA 4UOBA 2YG8A 1MPGA 3N5NX 3CWTA 2NOHA 4EA4A 5AN4A 3CVTA 4EJYA 1XG7A 1MUDA 3CWAA 4E9FA 3IHOA 1VRLA 3CW7A 4OFHA 2JHJA 4EJZA 1KG4A 1XQOA 2NOFA 1PU8A 1HU0A 1LWYA 2NOBA 2NOLA 1KG3A 1NKUA 3N0UA 2YG9A 4UNFA 1FN7A 3CWUA 1YQMA 4B24A 1M3HA 3IH7A 4B21A 1PVSA 5CHZA 1M3QA 1N3CA 3FSPA 1KG5A 1MUNA 2OFIA 1WEFA 2NOIA 1YQLA 1MUYA 1PU6A 3CVSA 1YQRA 2JHNA 3I0XA 1DIZA 1PU7A 5DPKA 1KG2A 1EBMA 1KQJA 1XQPA 4EA5A 3KNTA 4YPHA 2I5WA 4EW0A 4PIIA 3G0QA 4E9HA 1NGNA 3F0ZA 4E9EA 4AI5A 1YQKA 1KG6A 3S6IA 1KG7A 1KO9A 5KN9A 2NOZA 2JG6A 3CWSA 4OFEA 1ORPA 2OFKA 3F10A 1RRQA 4AIAA 5KN8A
chains in the Genus database with same CATH superfamily
4BE2A 1RRSA 2XHIA 2W03A 1LWWA 3OH9A 4OFAA 1P7MA 4E9GA 4EVVA 1WEIA 3FHFA 2H56A 3OH6A 2W04A 1ORNA 2ABKA 3OYAA 3I0WA 4DK9A 4E7IA 4B22A 3KTUA 3L2VA 4HSBA 1N39A 4E7LA 4B23A 1KEAA 4YOQA 3OYBA 2NOEA 1WEGA 1N3AA 4E7HA 3NNQA 1P59A 4EW4A 3D4VA 1LWVA 4AI4A 1LMZA 3FHGA 4BE1A 4ZTJA 3OYDA 4YPRA 3OGDA 4UOBA 2YG8A 1MPGA 3N5NX 3S3NA 4ZTFA 3CWTA 2NOHA 1U84A 4EA4A 5AN4A 3OYEA 3CVTA 4EJYA 1XG7A 1MUDA 3CWAA 4BE0A 3IHOA 4E9FA 4BACA 1VRLA 3CW7A 4OFHA 2JHJA 4EJZA 1KG4A 3OYKA 1XQOA 2NOFA 1PU8A 1HU0A 1LWYA 2NOBA 2NOLA 1KG3A 1NKUA 3OS1A 4BDYA 3N0UA 2YG9A 4UNFA 3OYHA 1FN7A 3CWUA 3OS0A 4IKFA 3OY9A 1YQMA 4B24A 4NZGA 1M3HA 3IH7A 4B21A 5FRMA 1PVSA 5CHZA 1M3QA 1N3CA 3FSPA 1KG5A 1MUNA 2JPSA 2OFIA 1WEFA 2NOIA 3L2WA 3OYCA 3R2XC 1YQLA 1MUYA 4E7JA 1PU6A 3CVSA 1YQRA 2JHNA 3I0XA 3OYLA 1DIZA 1PU7A 5DPKA 1KG2A 2V75A 3L2UA 1EBMA 1KQJA 3OYJA 1XQPA 4EA5A 3OYGA 3OS2A 3KNTA 4YPHA 2I5WA 3S3OA 3L2RA 4PIIA 3G0QA 4EW0A 3L2QA 3OYFA 3OYMA 1NGNA 4E9HA 3F0ZA 3OYNA 3LCNA 4E9EA 3VW4A 3OYIA 4AI5A 1YQKA 1KG6A 3S6IA 1KG7A 3S3MA 5FROA 5FRNA 1KO9A 5KN9A 2NOZA 2JG6A 4BDZA 4E7KA 3CWSA 4OFEA 1ORPA 2OFKA 3F10A 1RRQA 4AIAA 5KN8A
chains in the Genus database with same CATH topology
1RRSA 2XHIA 1LWWA 3OH9A 4OFAA 1P7MA 4E9GA 4EVVA 1WEIA 3FHFA 2H56A 3OH6A 1ORNA 2ABKA 3I0WA 4DK9A 4B22A 3KTUA 4HSBA 1N39A 4B23A 1KEAA 4YOQA 2NOEA 1WEGA 1N3AA 1P59A 4EW4A 3D4VA 1LWVA 4AI4A 1LMZA 3FHGA 4YPRA 3OGDA 4UOBA 2YG8A 1MPGA 3N5NX 3CWTA 2NOHA 4EA4A 5AN4A 3CVTA 4EJYA 1XG7A 1MUDA 3CWAA 4E9FA 3IHOA 1VRLA 3CW7A 4OFHA 2JHJA 4EJZA 1KG4A 1XQOA 2NOFA 1PU8A 1HU0A 1LWYA 2NOBA 2NOLA 1KG3A 1NKUA 3N0UA 2YG9A 4UNFA 1FN7A 3CWUA 1YQMA 4B24A 1M3HA 3IH7A 4B21A 1PVSA 5CHZA 1M3QA 1N3CA 3FSPA 1KG5A 1MUNA 2OFIA 1WEFA 2NOIA 1YQLA 1MUYA 1PU6A 3CVSA 1YQRA 2JHNA 3I0XA 1DIZA 1PU7A 5DPKA 1KG2A 1EBMA 1KQJA 1XQPA 4EA5A 3KNTA 4YPHA 2I5WA 4EW0A 4PIIA 3G0QA 4E9HA 1NGNA 3F0ZA 4E9EA 4AI5A 1YQKA 1KG6A 3S6IA 1KG7A 1KO9A 5KN9A 2NOZA 2JG6A 3CWSA 4OFEA 1ORPA 2OFKA 3F10A 1RRQA 4AIAA 5KN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RRS A;  2XHI A;  1LWW A;  3OH9 A;  4OFA A;  1P7M A;  4E9G A;  4EVV A;  1WEI A;  3FHF A;  2H56 A;  3OH6 A;  1ORN A;  2ABK A;  3I0W A;  4DK9 A;  4B22 A;  3KTU A;  4HSB A;  1N39 A;  4B23 A;  1KEA A;  4YOQ A;  2NOE A;  1WEG A;  1N3A A;  1P59 A;  4EW4 A;  3D4V A;  1LWV A;  4AI4 A;  1LMZ A;  3FHG A;  4YPR A;  3OGD A;  4UOB A;  2YG8 A;  1MPG A;  3N5N X;  3CWT A;  2NOH A;  4EA4 A;  5AN4 A;  3CVT A;  4EJY A;  1XG7 A;  1MUD A;  3CWA A;  4E9F A;  3IHO A;  1VRL A;  3CW7 A;  4OFH A;  2JHJ A;  4EJZ A;  1KG4 A;  1XQO A;  2NOF A;  1PU8 A;  1HU0 A;  1LWY A;  2NOB A;  2NOL A;  1KG3 A;  1NKU A;  3N0U A;  2YG9 A;  4UNF A;  1FN7 A;  3CWU A;  1YQM A;  4B24 A;  1M3H A;  3IH7 A;  4B21 A;  1PVS A;  5CHZ A;  1M3Q A;  1N3C A;  3FSP A;  1KG5 A;  1MUN A;  2OFI A;  1WEF A;  2NOI A;  1YQL A;  1MUY A;  1PU6 A;  3CVS A;  1YQR A;  2JHN A;  3I0X A;  1DIZ A;  1PU7 A;  5DPK A;  1KG2 A;  1EBM A;  1KQJ A;  1XQP A;  4EA5 A;  3KNT A;  4YPH A;  2I5W A;  4EW0 A;  4PII A;  3G0Q A;  4E9H A;  1NGN A;  3F0Z A;  4E9E A;  4AI5 A;  1YQK A;  1KG6 A;  3S6I A;  1KG7 A;  1KO9 A;  5KN9 A;  2NOZ A;  2JG6 A;  3CWS A;  4OFE A;  1ORP A;  2OFK A;  3F10 A;  1RRQ A;  4AIA A;  5KN8 A; 
#chains in the Genus database with same CATH topology
 4BE2 A;  1RRS A;  2XHI A;  2W03 A;  1LWW A;  3OH9 A;  4OFA A;  1P7M A;  4E9G A;  4EVV A;  1WEI A;  3FHF A;  2H56 A;  3OH6 A;  2W04 A;  1ORN A;  2ABK A;  3OYA A;  3I0W A;  4DK9 A;  4E7I A;  4B22 A;  3KTU A;  3L2V A;  4HSB A;  1N39 A;  4E7L A;  4B23 A;  1KEA A;  4YOQ A;  3OYB A;  2NOE A;  1WEG A;  1N3A A;  4E7H A;  3NNQ A;  1P59 A;  4EW4 A;  3D4V A;  1LWV A;  4AI4 A;  1LMZ A;  3FHG A;  4BE1 A;  4ZTJ A;  3OYD A;  4YPR A;  3OGD A;  4UOB A;  2YG8 A;  1MPG A;  3N5N X;  3S3N A;  4ZTF A;  3CWT A;  2NOH A;  1U84 A;  4EA4 A;  5AN4 A;  3OYE A;  3CVT A;  4EJY A;  1XG7 A;  1MUD A;  3CWA A;  4BE0 A;  3IHO A;  4E9F A;  4BAC A;  1VRL A;  3CW7 A;  4OFH A;  2JHJ A;  4EJZ A;  1KG4 A;  3OYK A;  1XQO A;  2NOF A;  1PU8 A;  1HU0 A;  1LWY A;  2NOB A;  2NOL A;  1KG3 A;  1NKU A;  3OS1 A;  4BDY A;  3N0U A;  2YG9 A;  4UNF A;  3OYH A;  1FN7 A;  3CWU A;  3OS0 A;  4IKF A;  3OY9 A;  1YQM A;  4B24 A;  4NZG A;  1M3H A;  3IH7 A;  4B21 A;  5FRM A;  1PVS A;  5CHZ A;  1M3Q A;  1N3C A;  3FSP A;  1KG5 A;  1MUN A;  2JPS A;  2OFI A;  1WEF A;  2NOI A;  3L2W A;  3OYC A;  3R2X C;  1YQL A;  1MUY A;  4E7J A;  1PU6 A;  3CVS A;  1YQR A;  2JHN A;  3I0X A;  3OYL A;  1DIZ A;  1PU7 A;  5DPK A;  1KG2 A;  2V75 A;  3L2U A;  1EBM A;  1KQJ A;  3OYJ A;  1XQP A;  4EA5 A;  3OYG A;  3OS2 A;  3KNT A;  4YPH A;  2I5W A;  3S3O A;  3L2R A;  4PII A;  3G0Q A;  4EW0 A;  3L2Q A;  3OYF A;  3OYM A;  1NGN A;  4E9H A;  3F0Z A;  3OYN A;  3LCN A;  4E9E A;  3VW4 A;  3OYI A;  4AI5 A;  1YQK A;  1KG6 A;  3S6I A;  1KG7 A;  3S3M A;  5FRO A;  5FRN A;  1KO9 A;  5KN9 A;  2NOZ A;  2JG6 A;  4BDZ A;  4E7K A;  3CWS A;  4OFE A;  1ORP A;  2OFK A;  3F10 A;  1RRQ A;  4AIA A;  5KN8 A; 
#chains in the Genus database with same CATH homology
 1RRS A;  2XHI A;  1LWW A;  3OH9 A;  4OFA A;  1P7M A;  4E9G A;  4EVV A;  1WEI A;  3FHF A;  2H56 A;  3OH6 A;  1ORN A;  2ABK A;  3I0W A;  4DK9 A;  4B22 A;  3KTU A;  4HSB A;  1N39 A;  4B23 A;  1KEA A;  4YOQ A;  2NOE A;  1WEG A;  1N3A A;  1P59 A;  4EW4 A;  3D4V A;  1LWV A;  4AI4 A;  1LMZ A;  3FHG A;  4YPR A;  3OGD A;  4UOB A;  2YG8 A;  1MPG A;  3N5N X;  3CWT A;  2NOH A;  4EA4 A;  5AN4 A;  3CVT A;  4EJY A;  1XG7 A;  1MUD A;  3CWA A;  4E9F A;  3IHO A;  1VRL A;  3CW7 A;  4OFH A;  2JHJ A;  4EJZ A;  1KG4 A;  1XQO A;  2NOF A;  1PU8 A;  1HU0 A;  1LWY A;  2NOB A;  2NOL A;  1KG3 A;  1NKU A;  3N0U A;  2YG9 A;  4UNF A;  1FN7 A;  3CWU A;  1YQM A;  4B24 A;  1M3H A;  3IH7 A;  4B21 A;  1PVS A;  5CHZ A;  1M3Q A;  1N3C A;  3FSP A;  1KG5 A;  1MUN A;  2OFI A;  1WEF A;  2NOI A;  1YQL A;  1MUY A;  1PU6 A;  3CVS A;  1YQR A;  2JHN A;  3I0X A;  1DIZ A;  1PU7 A;  5DPK A;  1KG2 A;  1EBM A;  1KQJ A;  1XQP A;  4EA5 A;  3KNT A;  4YPH A;  2I5W A;  4EW0 A;  4PII A;  3G0Q A;  4E9H A;  1NGN A;  3F0Z A;  4E9E A;  4AI5 A;  1YQK A;  1KG6 A;  3S6I A;  1KG7 A;  1KO9 A;  5KN9 A;  2NOZ A;  2JG6 A;  3CWS A;  4OFE A;  1ORP A;  2OFK A;  3F10 A;  1RRQ A;  4AIA A;  5KN8 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...