1KG7A

Crystal structure of the e161a mutant of e.coli muty (core fragment)
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
224
structure length
224
Chain Sequence
MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVANKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Escherichia coli
publication title Analysis of the E.coli MutY DNA glycosylase structure and function by site-directed mutagenesis
rcsb
molecule keywords A/G-specific adenine glycosylase
total genus 80
structure length 224
sequence length 224
ec nomenclature ec 3.2.2.31: Adenine glycosylase.
pdb deposition date 2001-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF10576 EndIII_4Fe-2S Iron-sulfur binding domain of endonuclease III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1kg7A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1kg7A01
2NOBA 5KN8A 1RRQA 1LWVA 2OFKA 1WEFA 1YQRA 3OH6A 2I5WA 4PIIA 1RRSA 3CWUA 4EJZA 4AIAA 1EBMA 4E9HA 3D4VA 3S6IA 3F10A 4OFEA 4B24A 3CWTA 2NOIA 2NOFA 1PVSA 1M3HA 2XHIA 1XQPA 4B23A 3I0XA 1WEIA 1KQJA 1NKUA 1ORPA 5AN4A 4UOBA 1P7MA 4E9FA 1ORNA 2NOZA 2YG8A 3N0UA 2OFIA 3CW7A 3OH9A 1FN7A 2JHJA 1HU0A 1YQMA 3FHGA 3G0QA 4OFAA 1DIZA 4EJYA 5KN9A 3N5NX 1YQKA 1NGNA 4B21A 1KG7A 4YOQA 1VRLA 1PU6A 3IH7A 5DPKA 3CVTA 1MUYA 1KG4A 1PU8A 2NOHA 2ABKA 4OFHA 3CVSA 1KO9A 1M3QA 4B22A 1LWYA 4YPHA 1LWWA 5CHZA 1P59A 1N3CA 4EW0A 4EA5A 1N39A 4HSBA 3F0ZA 1XQOA 1LMZA 4UNFA 1MUDA 1MPGA 1N3AA 3KNTA 1KG3A 3IHOA 2JHNA 4DK9A 1PU7A 1KEAA 3I0WA 4E9EA 4EA4A 1XG7A 1KG2A 3CWAA 2NOEA 1MUNA 1YQLA 3FHFA 4YPRA 4AI5A 4E9GA 2NOLA 3KTUA 3CWSA 1KG6A 4EW4A 4EVVA 1KG5A 3FSPA 1WEGA 3OGDA 2H56A 2YG9A 4AI4A 2JG6A
chains in the Genus database with same CATH superfamily
2NOBA 5KN8A 1RRQA 4E7KA 1LWVA 3OYCA 2OFKA 1WEFA 1YQRA 3OH6A 2I5WA 4PIIA 1RRSA 3CWUA 3OYMA 4EJZA 2W04A 4AIAA 1EBMA 4E9HA 3D4VA 4BACA 3S6IA 3OYBA 3F10A 4OFEA 4B24A 3VW4A 3CWTA 2V75A 2NOIA 3OYFA 2NOFA 1PVSA 1M3HA 2XHIA 4BDZA 1XQPA 4B23A 3I0XA 1WEIA 1KQJA 1NKUA 1ORPA 5AN4A 4UOBA 1P7MA 4E7JA 4E9FA 1ORNA 2NOZA 2YG8A 3N0UA 2OFIA 3CW7A 3OH9A 1FN7A 2JHJA 1HU0A 3NNQA 1YQMA 5FRNA 3FHGA 3G0QA 4OFAA 1DIZA 4EJYA 5KN9A 3N5NX 3OS1A 1NGNA 4B21A 1YQKA 4ZTJA 1KG7A 4YOQA 3OYIA 1VRLA 1PU6A 3IH7A 5DPKA 3CVTA 1MUYA 3S3OA 1KG4A 1PU8A 2NOHA 2ABKA 5FRMA 4OFHA 3CVSA 1KO9A 1M3QA 3LCNA 4B22A 4BE2A 1LWYA 3S3MA 4YPHA 1LWWA 5CHZA 1P59A 3L2VA 4EW0A 1N3CA 4EA5A 4BE0A 1N39A 3R2XC 3OYAA 4HSBA 3F0ZA 1XQOA 3OYKA 1LMZA 4NZGA 1MUDA 4UNFA 3L2RA 3OS0A 3L2WA 1MPGA 1N3AA 3KNTA 1KG3A 3IHOA 2JHNA 4DK9A 1PU7A 4BE1A 1KEAA 3OYEA 3OYDA 3I0WA 4E9EA 4EA4A 1XG7A 1KG2A 4E7IA 2JPSA 3CWAA 2NOEA 1MUNA 1YQLA 3FHFA 4YPRA 1U84A 5FROA 4AI5A 4E9GA 3OYNA 2NOLA 4IKFA 4BDYA 3KTUA 3OYGA 3OY9A 4E7HA 3CWSA 4ZTFA 2W03A 1KG6A 4EW4A 3OS2A 4E7LA 3OYJA 1KG5A 4EVVA 3FSPA 3L2QA 3OYHA 1WEGA 3OGDA 2H56A 2YG9A 4AI4A 3OYLA 3L2UA 3S3NA 2JG6A
chains in the Genus database with same CATH topology
2NOBA 5KN8A 1RRQA 1LWVA 2OFKA 1WEFA 1YQRA 3OH6A 2I5WA 4PIIA 1RRSA 3CWUA 4EJZA 4AIAA 1EBMA 4E9HA 3D4VA 3S6IA 3F10A 4OFEA 4B24A 3CWTA 2NOIA 2NOFA 1PVSA 1M3HA 2XHIA 1XQPA 4B23A 3I0XA 1WEIA 1KQJA 1NKUA 1ORPA 5AN4A 4UOBA 1P7MA 4E9FA 1ORNA 2NOZA 2YG8A 3N0UA 2OFIA 3CW7A 3OH9A 1FN7A 2JHJA 1HU0A 1YQMA 3FHGA 3G0QA 4OFAA 1DIZA 4EJYA 5KN9A 3N5NX 1YQKA 1NGNA 4B21A 1KG7A 4YOQA 1VRLA 1PU6A 3IH7A 5DPKA 3CVTA 1MUYA 1KG4A 1PU8A 2NOHA 2ABKA 4OFHA 3CVSA 1KO9A 1M3QA 4B22A 1LWYA 4YPHA 1LWWA 5CHZA 1P59A 1N3CA 4EW0A 4EA5A 1N39A 4HSBA 3F0ZA 1XQOA 1LMZA 4UNFA 1MUDA 1MPGA 1N3AA 3KNTA 1KG3A 3IHOA 2JHNA 4DK9A 1PU7A 1KEAA 3I0WA 4E9EA 4EA4A 1XG7A 1KG2A 3CWAA 2NOEA 1MUNA 1YQLA 3FHFA 4YPRA 4AI5A 4E9GA 2NOLA 3KTUA 3CWSA 1KG6A 4EW4A 4EVVA 1KG5A 3FSPA 1WEGA 3OGDA 2H56A 2YG9A 4AI4A 2JG6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NOB A;  5KN8 A;  1RRQ A;  1LWV A;  2OFK A;  1WEF A;  1YQR A;  3OH6 A;  2I5W A;  4PII A;  1RRS A;  3CWU A;  4EJZ A;  4AIA A;  1EBM A;  4E9H A;  3D4V A;  3S6I A;  3F10 A;  4OFE A;  4B24 A;  3CWT A;  2NOI A;  2NOF A;  1PVS A;  1M3H A;  2XHI A;  1XQP A;  4B23 A;  3I0X A;  1WEI A;  1KQJ A;  1NKU A;  1ORP A;  5AN4 A;  4UOB A;  1P7M A;  4E9F A;  1ORN A;  2NOZ A;  2YG8 A;  3N0U A;  2OFI A;  3CW7 A;  3OH9 A;  1FN7 A;  2JHJ A;  1HU0 A;  1YQM A;  3FHG A;  3G0Q A;  4OFA A;  1DIZ A;  4EJY A;  5KN9 A;  3N5N X;  1YQK A;  1NGN A;  4B21 A;  1KG7 A;  4YOQ A;  1VRL A;  1PU6 A;  3IH7 A;  5DPK A;  3CVT A;  1MUY A;  1KG4 A;  1PU8 A;  2NOH A;  2ABK A;  4OFH A;  3CVS A;  1KO9 A;  1M3Q A;  4B22 A;  1LWY A;  4YPH A;  1LWW A;  5CHZ A;  1P59 A;  1N3C A;  4EW0 A;  4EA5 A;  1N39 A;  4HSB A;  3F0Z A;  1XQO A;  1LMZ A;  4UNF A;  1MUD A;  1MPG A;  1N3A A;  3KNT A;  1KG3 A;  3IHO A;  2JHN A;  4DK9 A;  1PU7 A;  1KEA A;  3I0W A;  4E9E A;  4EA4 A;  1XG7 A;  1KG2 A;  3CWA A;  2NOE A;  1MUN A;  1YQL A;  3FHF A;  4YPR A;  4AI5 A;  4E9G A;  2NOL A;  3KTU A;  3CWS A;  1KG6 A;  4EW4 A;  4EVV A;  1KG5 A;  3FSP A;  1WEG A;  3OGD A;  2H56 A;  2YG9 A;  4AI4 A;  2JG6 A; 
#chains in the Genus database with same CATH topology
 2NOB A;  5KN8 A;  1RRQ A;  4E7K A;  1LWV A;  3OYC A;  2OFK A;  1WEF A;  1YQR A;  3OH6 A;  2I5W A;  4PII A;  1RRS A;  3CWU A;  3OYM A;  4EJZ A;  2W04 A;  4AIA A;  1EBM A;  4E9H A;  3D4V A;  4BAC A;  3S6I A;  3OYB A;  3F10 A;  4OFE A;  4B24 A;  3VW4 A;  3CWT A;  2V75 A;  2NOI A;  3OYF A;  2NOF A;  1PVS A;  1M3H A;  2XHI A;  4BDZ A;  1XQP A;  4B23 A;  3I0X A;  1WEI A;  1KQJ A;  1NKU A;  1ORP A;  5AN4 A;  4UOB A;  1P7M A;  4E7J A;  4E9F A;  1ORN A;  2NOZ A;  2YG8 A;  3N0U A;  2OFI A;  3CW7 A;  3OH9 A;  1FN7 A;  2JHJ A;  1HU0 A;  3NNQ A;  1YQM A;  5FRN A;  3FHG A;  3G0Q A;  4OFA A;  1DIZ A;  4EJY A;  5KN9 A;  3N5N X;  3OS1 A;  1NGN A;  4B21 A;  1YQK A;  4ZTJ A;  1KG7 A;  4YOQ A;  3OYI A;  1VRL A;  1PU6 A;  3IH7 A;  5DPK A;  3CVT A;  1MUY A;  3S3O A;  1KG4 A;  1PU8 A;  2NOH A;  2ABK A;  5FRM A;  4OFH A;  3CVS A;  1KO9 A;  1M3Q A;  3LCN A;  4B22 A;  4BE2 A;  1LWY A;  3S3M A;  4YPH A;  1LWW A;  5CHZ A;  1P59 A;  3L2V A;  4EW0 A;  1N3C A;  4EA5 A;  4BE0 A;  1N39 A;  3R2X C;  3OYA A;  4HSB A;  3F0Z A;  1XQO A;  3OYK A;  1LMZ A;  4NZG A;  1MUD A;  4UNF A;  3L2R A;  3OS0 A;  3L2W A;  1MPG A;  1N3A A;  3KNT A;  1KG3 A;  3IHO A;  2JHN A;  4DK9 A;  1PU7 A;  4BE1 A;  1KEA A;  3OYE A;  3OYD A;  3I0W A;  4E9E A;  4EA4 A;  1XG7 A;  1KG2 A;  4E7I A;  2JPS A;  3CWA A;  2NOE A;  1MUN A;  1YQL A;  3FHF A;  4YPR A;  1U84 A;  5FRO A;  4AI5 A;  4E9G A;  3OYN A;  2NOL A;  4IKF A;  4BDY A;  3KTU A;  3OYG A;  3OY9 A;  4E7H A;  3CWS A;  4ZTF A;  2W03 A;  1KG6 A;  4EW4 A;  3OS2 A;  4E7L A;  3OYJ A;  1KG5 A;  4EVV A;  3FSP A;  3L2Q A;  3OYH A;  1WEG A;  3OGD A;  2H56 A;  2YG9 A;  4AI4 A;  3OYL A;  3L2U A;  3S3N A;  2JG6 A; 
#chains in the Genus database with same CATH homology
 2NOB A;  5KN8 A;  1RRQ A;  1LWV A;  2OFK A;  1WEF A;  1YQR A;  3OH6 A;  2I5W A;  4PII A;  1RRS A;  3CWU A;  4EJZ A;  4AIA A;  1EBM A;  4E9H A;  3D4V A;  3S6I A;  3F10 A;  4OFE A;  4B24 A;  3CWT A;  2NOI A;  2NOF A;  1PVS A;  1M3H A;  2XHI A;  1XQP A;  4B23 A;  3I0X A;  1WEI A;  1KQJ A;  1NKU A;  1ORP A;  5AN4 A;  4UOB A;  1P7M A;  4E9F A;  1ORN A;  2NOZ A;  2YG8 A;  3N0U A;  2OFI A;  3CW7 A;  3OH9 A;  1FN7 A;  2JHJ A;  1HU0 A;  1YQM A;  3FHG A;  3G0Q A;  4OFA A;  1DIZ A;  4EJY A;  5KN9 A;  3N5N X;  1YQK A;  1NGN A;  4B21 A;  1KG7 A;  4YOQ A;  1VRL A;  1PU6 A;  3IH7 A;  5DPK A;  3CVT A;  1MUY A;  1KG4 A;  1PU8 A;  2NOH A;  2ABK A;  4OFH A;  3CVS A;  1KO9 A;  1M3Q A;  4B22 A;  1LWY A;  4YPH A;  1LWW A;  5CHZ A;  1P59 A;  1N3C A;  4EW0 A;  4EA5 A;  1N39 A;  4HSB A;  3F0Z A;  1XQO A;  1LMZ A;  4UNF A;  1MUD A;  1MPG A;  1N3A A;  3KNT A;  1KG3 A;  3IHO A;  2JHN A;  4DK9 A;  1PU7 A;  1KEA A;  3I0W A;  4E9E A;  4EA4 A;  1XG7 A;  1KG2 A;  3CWA A;  2NOE A;  1MUN A;  1YQL A;  3FHF A;  4YPR A;  4AI5 A;  4E9G A;  2NOL A;  3KTU A;  3CWS A;  1KG6 A;  4EW4 A;  4EVV A;  1KG5 A;  3FSP A;  1WEG A;  3OGD A;  2H56 A;  2YG9 A;  4AI4 A;  2JG6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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