4HSBA

S. pombe 3-methyladenine dna glycosylase-like protein mag2 bound to damaged dna
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
205
structure length
205
Chain Sequence
SDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKLH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
source organism Schizosaccharomyces pombe 972h-
publication title Non-productive DNA damage binding by DNA glycosylase-like protein Mag2 from Schizosaccharomyces pombe.
pubmed doi rcsb
molecule keywords Probable DNA-3-methyladenine glycosylase 2
total genus 74
structure length 205
sequence length 205
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 2012-10-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4hsbA02
1.10.1670.40 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Endonuclease Iii, domain 2 4hsbA01
3N5NX 4EVVA 3IH7A 1VRLA 4B24A 4B23A 3OGDA 5KN8A 3I0WA 1P7MA 3F10A 3OH6A 3CVTA 1PU7A 2JHJA 2XHIA 2ABKA 4E9GA 2OFIA 3CWAA 3FHFA 3I0XA 1KG4A 4DK9A 3D4VA 1M3HA 5AN4A 1MUYA 1PU6A 1FN7A 1XQPA 4YPHA 5DPKA 5CHZA 4YPRA 1XQOA 4B22A 1KG7A 1LWYA 4E9FA 4UOBA 2NOLA 1WEFA 4E9EA 3OH9A 3FHGA 1YQMA 3F0ZA 1KG2A 2YG9A 4EJZA 1N3AA 1MPGA 1P59A 1MUDA 1NGNA 1KG3A 1DIZA 1RRSA 1NKUA 3IHOA 4EJYA 2NOEA 4AIAA 2NOFA 1PU8A 2NOBA 1KG6A 4UNFA 4OFAA 4OFHA 2NOZA 2YG8A 5KN9A 1LWWA 4PIIA 1PVSA 2I5WA 1ORPA 3CWUA 4EW0A 4AI5A 4YOQA 2JHNA 3S6IA 3KTUA 4EA4A 3CWTA 4EA5A 3CWSA 4HSBA 1M3QA 1KO9A 3CVSA 2NOHA 1KEAA 1YQRA 1RRQA 1KG5A 1HU0A 1EBMA 3CW7A 1YQKA 2NOIA 4B21A 4E9HA 4AI4A 1YQLA 3N0UA 1WEIA 1ORNA 3KNTA 4OFEA 1KQJA 3G0QA 4EW4A 1N39A 2JG6A 1MUNA 1WEGA 1N3CA 1LMZA 1LWVA 3FSPA 2OFKA 2H56A 1XG7A
chains in the Genus database with same CATH superfamily
3N5NX 4EVVA 3IH7A 1VRLA 4B24A 4B23A 3OGDA 5KN8A 2V75A 3I0WA 5FRMA 3L2UA 1P7MA 3OYBA 3F10A 3OH6A 3CVTA 1PU7A 2JHJA 2XHIA 2ABKA 4E9GA 2OFIA 3OYGA 3CWAA 3FHFA 3I0XA 1KG4A 4ZTJA 4DK9A 3D4VA 1M3HA 3S3OA 5AN4A 3OYIA 1MUYA 3OYDA 3OYKA 3OYHA 1PU6A 1FN7A 2W03A 1XQPA 4BDZA 1U84A 4YPHA 3OS0A 3VW4A 5DPKA 5CHZA 4E7HA 4YPRA 1XQOA 4B22A 1KG7A 3LCNA 4E9FA 4UOBA 1LWYA 2NOLA 3OYAA 4BE1A 3OYMA 1WEFA 4E9EA 3OS2A 3OH9A 3FHGA 1YQMA 3F0ZA 1KG2A 2YG9A 4EJZA 4E7LA 1N3AA 1MPGA 1P59A 1MUDA 1NGNA 5FROA 3L2VA 1KG3A 1DIZA 1RRSA 1NKUA 3IHOA 4EJYA 2JPSA 2NOEA 4AIAA 2NOFA 1PU8A 2NOBA 1KG6A 4UNFA 4OFAA 3OYEA 4OFHA 3R2XC 2NOZA 2YG8A 5KN9A 1LWWA 4PIIA 1PVSA 4E7IA 4IKFA 2I5WA 1ORPA 3CWUA 4EW0A 4AI5A 3OYJA 3OYLA 4YOQA 3OYNA 3OYCA 4BDYA 2JHNA 4E7JA 3S6IA 3KTUA 4EA4A 3CWTA 4EA5A 3S3MA 4BACA 4HSBA 3CWSA 1M3QA 3L2RA 2W04A 3S3NA 3NNQA 1KO9A 3CVSA 2NOHA 4NZGA 1KEAA 3OS1A 1YQRA 1RRQA 1KG5A 1HU0A 1EBMA 3CW7A 1YQKA 2NOIA 4B21A 4E9HA 5FRNA 4AI4A 4ZTFA 1YQLA 3OYFA 3N0UA 1WEIA 3OY9A 1ORNA 3KNTA 4OFEA 1KQJA 3G0QA 4EW4A 3L2WA 2JG6A 1N39A 1MUNA 1WEGA 3L2QA 4BE2A 1N3CA 1LMZA 1LWVA 4BE0A 3FSPA 4E7KA 2OFKA 2H56A 1XG7A
chains in the Genus database with same CATH topology
3N5NX 4EVVA 3IH7A 1VRLA 4B24A 4B23A 3OGDA 5KN8A 3I0WA 1P7MA 3F10A 3OH6A 3CVTA 1PU7A 2JHJA 2XHIA 2ABKA 4E9GA 2OFIA 3CWAA 3FHFA 3I0XA 1KG4A 4DK9A 3D4VA 1M3HA 5AN4A 1MUYA 1PU6A 1FN7A 1XQPA 4YPHA 5DPKA 5CHZA 4YPRA 1XQOA 4B22A 1KG7A 1LWYA 4E9FA 4UOBA 2NOLA 1WEFA 4E9EA 3OH9A 3FHGA 1YQMA 3F0ZA 1KG2A 2YG9A 4EJZA 1N3AA 1MPGA 1P59A 1MUDA 1NGNA 1KG3A 1DIZA 1RRSA 1NKUA 3IHOA 4EJYA 2NOEA 4AIAA 2NOFA 1PU8A 2NOBA 1KG6A 4UNFA 4OFAA 4OFHA 2NOZA 2YG8A 5KN9A 1LWWA 4PIIA 1PVSA 2I5WA 1ORPA 3CWUA 4EW0A 4AI5A 4YOQA 2JHNA 3S6IA 3KTUA 4EA4A 3CWTA 4EA5A 3CWSA 4HSBA 1M3QA 1KO9A 3CVSA 2NOHA 1KEAA 1YQRA 1RRQA 1KG5A 1HU0A 1EBMA 3CW7A 1YQKA 2NOIA 4B21A 4E9HA 4AI4A 1YQLA 3N0UA 1WEIA 1ORNA 3KNTA 4OFEA 1KQJA 3G0QA 4EW4A 1N39A 2JG6A 1MUNA 1WEGA 1N3CA 1LMZA 1LWVA 3FSPA 2OFKA 2H56A 1XG7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N5N X;  4EVV A;  3IH7 A;  1VRL A;  4B24 A;  4B23 A;  3OGD A;  5KN8 A;  3I0W A;  1P7M A;  3F10 A;  3OH6 A;  3CVT A;  1PU7 A;  2JHJ A;  2XHI A;  2ABK A;  4E9G A;  2OFI A;  3CWA A;  3FHF A;  3I0X A;  1KG4 A;  4DK9 A;  3D4V A;  1M3H A;  5AN4 A;  1MUY A;  1PU6 A;  1FN7 A;  1XQP A;  4YPH A;  5DPK A;  5CHZ A;  4YPR A;  1XQO A;  4B22 A;  1KG7 A;  1LWY A;  4E9F A;  4UOB A;  2NOL A;  1WEF A;  4E9E A;  3OH9 A;  3FHG A;  1YQM A;  3F0Z A;  1KG2 A;  2YG9 A;  4EJZ A;  1N3A A;  1MPG A;  1P59 A;  1MUD A;  1NGN A;  1KG3 A;  1DIZ A;  1RRS A;  1NKU A;  3IHO A;  4EJY A;  2NOE A;  4AIA A;  2NOF A;  1PU8 A;  2NOB A;  1KG6 A;  4UNF A;  4OFA A;  4OFH A;  2NOZ A;  2YG8 A;  5KN9 A;  1LWW A;  4PII A;  1PVS A;  2I5W A;  1ORP A;  3CWU A;  4EW0 A;  4AI5 A;  4YOQ A;  2JHN A;  3S6I A;  3KTU A;  4EA4 A;  3CWT A;  4EA5 A;  3CWS A;  4HSB A;  1M3Q A;  1KO9 A;  3CVS A;  2NOH A;  1KEA A;  1YQR A;  1RRQ A;  1KG5 A;  1HU0 A;  1EBM A;  3CW7 A;  1YQK A;  2NOI A;  4B21 A;  4E9H A;  4AI4 A;  1YQL A;  3N0U A;  1WEI A;  1ORN A;  3KNT A;  4OFE A;  1KQJ A;  3G0Q A;  4EW4 A;  1N39 A;  2JG6 A;  1MUN A;  1WEG A;  1N3C A;  1LMZ A;  1LWV A;  3FSP A;  2OFK A;  2H56 A;  1XG7 A; 
#chains in the Genus database with same CATH topology
 3N5N X;  4EVV A;  3IH7 A;  1VRL A;  4B24 A;  4B23 A;  3OGD A;  5KN8 A;  2V75 A;  3I0W A;  5FRM A;  3L2U A;  1P7M A;  3OYB A;  3F10 A;  3OH6 A;  3CVT A;  1PU7 A;  2JHJ A;  2XHI A;  2ABK A;  4E9G A;  2OFI A;  3OYG A;  3CWA A;  3FHF A;  3I0X A;  1KG4 A;  4ZTJ A;  4DK9 A;  3D4V A;  1M3H A;  3S3O A;  5AN4 A;  3OYI A;  1MUY A;  3OYD A;  3OYK A;  3OYH A;  1PU6 A;  1FN7 A;  2W03 A;  1XQP A;  4BDZ A;  1U84 A;  4YPH A;  3OS0 A;  3VW4 A;  5DPK A;  5CHZ A;  4E7H A;  4YPR A;  1XQO A;  4B22 A;  1KG7 A;  3LCN A;  4E9F A;  4UOB A;  1LWY A;  2NOL A;  3OYA A;  4BE1 A;  3OYM A;  1WEF A;  4E9E A;  3OS2 A;  3OH9 A;  3FHG A;  1YQM A;  3F0Z A;  1KG2 A;  2YG9 A;  4EJZ A;  4E7L A;  1N3A A;  1MPG A;  1P59 A;  1MUD A;  1NGN A;  5FRO A;  3L2V A;  1KG3 A;  1DIZ A;  1RRS A;  1NKU A;  3IHO A;  4EJY A;  2JPS A;  2NOE A;  4AIA A;  2NOF A;  1PU8 A;  2NOB A;  1KG6 A;  4UNF A;  4OFA A;  3OYE A;  4OFH A;  3R2X C;  2NOZ A;  2YG8 A;  5KN9 A;  1LWW A;  4PII A;  1PVS A;  4E7I A;  4IKF A;  2I5W A;  1ORP A;  3CWU A;  4EW0 A;  4AI5 A;  3OYJ A;  3OYL A;  4YOQ A;  3OYN A;  3OYC A;  4BDY A;  2JHN A;  4E7J A;  3S6I A;  3KTU A;  4EA4 A;  3CWT A;  4EA5 A;  3S3M A;  4BAC A;  4HSB A;  3CWS A;  1M3Q A;  3L2R A;  2W04 A;  3S3N A;  3NNQ A;  1KO9 A;  3CVS A;  2NOH A;  4NZG A;  1KEA A;  3OS1 A;  1YQR A;  1RRQ A;  1KG5 A;  1HU0 A;  1EBM A;  3CW7 A;  1YQK A;  2NOI A;  4B21 A;  4E9H A;  5FRN A;  4AI4 A;  4ZTF A;  1YQL A;  3OYF A;  3N0U A;  1WEI A;  3OY9 A;  1ORN A;  3KNT A;  4OFE A;  1KQJ A;  3G0Q A;  4EW4 A;  3L2W A;  2JG6 A;  1N39 A;  1MUN A;  1WEG A;  3L2Q A;  4BE2 A;  1N3C A;  1LMZ A;  1LWV A;  4BE0 A;  3FSP A;  4E7K A;  2OFK A;  2H56 A;  1XG7 A; 
#chains in the Genus database with same CATH homology
 3N5N X;  4EVV A;  3IH7 A;  1VRL A;  4B24 A;  4B23 A;  3OGD A;  5KN8 A;  3I0W A;  1P7M A;  3F10 A;  3OH6 A;  3CVT A;  1PU7 A;  2JHJ A;  2XHI A;  2ABK A;  4E9G A;  2OFI A;  3CWA A;  3FHF A;  3I0X A;  1KG4 A;  4DK9 A;  3D4V A;  1M3H A;  5AN4 A;  1MUY A;  1PU6 A;  1FN7 A;  1XQP A;  4YPH A;  5DPK A;  5CHZ A;  4YPR A;  1XQO A;  4B22 A;  1KG7 A;  1LWY A;  4E9F A;  4UOB A;  2NOL A;  1WEF A;  4E9E A;  3OH9 A;  3FHG A;  1YQM A;  3F0Z A;  1KG2 A;  2YG9 A;  4EJZ A;  1N3A A;  1MPG A;  1P59 A;  1MUD A;  1NGN A;  1KG3 A;  1DIZ A;  1RRS A;  1NKU A;  3IHO A;  4EJY A;  2NOE A;  4AIA A;  2NOF A;  1PU8 A;  2NOB A;  1KG6 A;  4UNF A;  4OFA A;  4OFH A;  2NOZ A;  2YG8 A;  5KN9 A;  1LWW A;  4PII A;  1PVS A;  2I5W A;  1ORP A;  3CWU A;  4EW0 A;  4AI5 A;  4YOQ A;  2JHN A;  3S6I A;  3KTU A;  4EA4 A;  3CWT A;  4EA5 A;  3CWS A;  4HSB A;  1M3Q A;  1KO9 A;  3CVS A;  2NOH A;  1KEA A;  1YQR A;  1RRQ A;  1KG5 A;  1HU0 A;  1EBM A;  3CW7 A;  1YQK A;  2NOI A;  4B21 A;  4E9H A;  4AI4 A;  1YQL A;  3N0U A;  1WEI A;  1ORN A;  3KNT A;  4OFE A;  1KQJ A;  3G0Q A;  4EW4 A;  1N39 A;  2JG6 A;  1MUN A;  1WEG A;  1N3C A;  1LMZ A;  1LWV A;  3FSP A;  2OFK A;  2H56 A;  1XG7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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