1P59A

Structure of a non-covalent endonuclease iii-dna complex
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
214
structure length
214
Chain Sequence
MLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*AP*AP*GP*AP*CP*GP*(5IU)P*GP*GP*AP*C)-3'
publication title Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 73
structure length 214
sequence length 214
ec nomenclature
pdb deposition date 2003-04-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1p59A01
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1p59A02
3S6IA 1KG7A 3CVSA 1YQMA 4EW0A 1WEIA 3I0WA 3IHOA 1M3HA 4YPRA 1KG5A 3KTUA 1N3AA 1NGNA 2JG6A 3OH9A 1XG7A 1YQRA 1M3QA 1N39A 3CWTA 1EBMA 4UNFA 1NKUA 3N0UA 4YPHA 1HU0A 4OFAA 1YQKA 2NOBA 4E9GA 3FHFA 3CWSA 1YQLA 2YG8A 2YG9A 4OFEA 1LWYA 1P7MA 3FSPA 3I0XA 4B21A 5AN4A 4HSBA 2ABKA 3G0QA 1LMZA 1PU8A 3CVTA 1KG2A 1MUDA 4EA5A 5DPKA 4E9HA 1XQOA 3FHGA 4E9EA 2NOIA 3CWUA 1FN7A 3OGDA 2H56A 5CHZA 4PIIA 1ORPA 1VRLA 1KG3A 4OFHA 2NOHA 4AI4A 1RRSA 1RRQA 3F10A 1MPGA 2JHNA 1XQPA 4UOBA 1LWVA 4DK9A 4EW4A 1MUYA 4AIAA 4AI5A 2XHIA 3D4VA 5KN8A 4EJZA 4YOQA 4EVVA 2NOLA 2OFKA 4EA4A 1PU6A 1P59A 2NOEA 1PU7A 2NOZA 3OH6A 4EJYA 3CW7A 1KQJA 1ORNA 1KG6A 3IH7A 1N3CA 1WEGA 3CWAA 3N5NX 3F0ZA 5KN9A 1DIZA 1KG4A 1KO9A 1MUNA 1KEAA 1LWWA 4B22A 2I5WA 1WEFA 2JHJA 4B24A 4B23A 2OFIA 1PVSA 4E9FA 3KNTA 2NOFA
chains in the Genus database with same CATH superfamily
3S6IA 3L2WA 1KG7A 3OYNA 3CVSA 3L2UA 3R2XC 4EW0A 1WEIA 1YQMA 3OYDA 3LCNA 3I0WA 3IHOA 3OS1A 1M3HA 3OYBA 4YPRA 1KG5A 3KTUA 1N3AA 1NGNA 2JG6A 3OH9A 3OYEA 1XG7A 3OYMA 4E7IA 2JPSA 1YQRA 1M3QA 1N39A 5FROA 3CWTA 1EBMA 3L2VA 4UNFA 2V75A 1NKUA 3N0UA 4YPHA 1HU0A 4OFAA 3OYIA 1YQKA 3OYKA 3S3NA 2NOBA 4E9GA 3FHFA 3CWSA 4BE1A 1YQLA 2YG8A 3L2QA 2YG9A 4OFEA 1LWYA 1P7MA 3FSPA 4ZTFA 3I0XA 4B21A 3OYLA 5AN4A 4HSBA 2ABKA 3G0QA 5FRMA 1LMZA 1PU8A 3CVTA 1KG2A 1MUDA 4EA5A 5DPKA 4E9HA 4E7HA 1XQOA 3FHGA 4E9EA 3OYAA 4NZGA 3OS0A 4BACA 2NOIA 3CWUA 1FN7A 3OGDA 4BDZA 3VW4A 3OY9A 2H56A 5CHZA 4PIIA 1ORPA 1VRLA 1KG3A 3NNQA 4OFHA 4E7LA 2NOHA 4AI4A 2W03A 1RRSA 1RRQA 3F10A 1MPGA 3L2RA 4ZTJA 2JHNA 1XQPA 4UOBA 4IKFA 1LWVA 3OS2A 4DK9A 4BE0A 4EW4A 1MUYA 4AIAA 4AI5A 2XHIA 3D4VA 5KN8A 4EJZA 3OYFA 4YOQA 3OYHA 2W04A 4EVVA 2NOLA 2OFKA 4EA4A 1PU6A 1P59A 2NOEA 1PU7A 2NOZA 3OH6A 4EJYA 3CW7A 1KQJA 1ORNA 1KG6A 3IH7A 4E7KA 1N3CA 1WEGA 3CWAA 3N5NX 3F0ZA 5KN9A 1DIZA 1KG4A 1KO9A 1MUNA 5FRNA 1U84A 1KEAA 1LWWA 3OYGA 4B22A 4BDYA 4E7JA 2I5WA 1WEFA 4BE2A 2JHJA 4B24A 4B23A 2OFIA 1PVSA 4E9FA 3KNTA 3OYJA 3OYCA 3S3OA 3S3MA 2NOFA
chains in the Genus database with same CATH topology
3S6IA 1KG7A 3CVSA 1YQMA 4EW0A 1WEIA 3I0WA 3IHOA 1M3HA 4YPRA 1KG5A 3KTUA 1N3AA 1NGNA 2JG6A 3OH9A 1XG7A 1YQRA 1M3QA 1N39A 3CWTA 1EBMA 4UNFA 1NKUA 3N0UA 4YPHA 1HU0A 4OFAA 1YQKA 2NOBA 4E9GA 3FHFA 3CWSA 1YQLA 2YG8A 2YG9A 4OFEA 1LWYA 1P7MA 3FSPA 3I0XA 4B21A 5AN4A 4HSBA 2ABKA 3G0QA 1LMZA 1PU8A 3CVTA 1KG2A 1MUDA 4EA5A 5DPKA 4E9HA 1XQOA 3FHGA 4E9EA 2NOIA 3CWUA 1FN7A 3OGDA 2H56A 5CHZA 4PIIA 1ORPA 1VRLA 1KG3A 4OFHA 2NOHA 4AI4A 1RRSA 1RRQA 3F10A 1MPGA 2JHNA 1XQPA 4UOBA 1LWVA 4DK9A 4EW4A 1MUYA 4AIAA 4AI5A 2XHIA 3D4VA 5KN8A 4EJZA 4YOQA 4EVVA 2NOLA 2OFKA 4EA4A 1PU6A 1P59A 2NOEA 1PU7A 2NOZA 3OH6A 4EJYA 3CW7A 1KQJA 1ORNA 1KG6A 3IH7A 1N3CA 1WEGA 3CWAA 3N5NX 3F0ZA 5KN9A 1DIZA 1KG4A 1KO9A 1MUNA 1KEAA 1LWWA 4B22A 2I5WA 1WEFA 2JHJA 4B24A 4B23A 2OFIA 1PVSA 4E9FA 3KNTA 2NOFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S6I A;  1KG7 A;  3CVS A;  1YQM A;  4EW0 A;  1WEI A;  3I0W A;  3IHO A;  1M3H A;  4YPR A;  1KG5 A;  3KTU A;  1N3A A;  1NGN A;  2JG6 A;  3OH9 A;  1XG7 A;  1YQR A;  1M3Q A;  1N39 A;  3CWT A;  1EBM A;  4UNF A;  1NKU A;  3N0U A;  4YPH A;  1HU0 A;  4OFA A;  1YQK A;  2NOB A;  4E9G A;  3FHF A;  3CWS A;  1YQL A;  2YG8 A;  2YG9 A;  4OFE A;  1LWY A;  1P7M A;  3FSP A;  3I0X A;  4B21 A;  5AN4 A;  4HSB A;  2ABK A;  3G0Q A;  1LMZ A;  1PU8 A;  3CVT A;  1KG2 A;  1MUD A;  4EA5 A;  5DPK A;  4E9H A;  1XQO A;  3FHG A;  4E9E A;  2NOI A;  3CWU A;  1FN7 A;  3OGD A;  2H56 A;  5CHZ A;  4PII A;  1ORP A;  1VRL A;  1KG3 A;  4OFH A;  2NOH A;  4AI4 A;  1RRS A;  1RRQ A;  3F10 A;  1MPG A;  2JHN A;  1XQP A;  4UOB A;  1LWV A;  4DK9 A;  4EW4 A;  1MUY A;  4AIA A;  4AI5 A;  2XHI A;  3D4V A;  5KN8 A;  4EJZ A;  4YOQ A;  4EVV A;  2NOL A;  2OFK A;  4EA4 A;  1PU6 A;  1P59 A;  2NOE A;  1PU7 A;  2NOZ A;  3OH6 A;  4EJY A;  3CW7 A;  1KQJ A;  1ORN A;  1KG6 A;  3IH7 A;  1N3C A;  1WEG A;  3CWA A;  3N5N X;  3F0Z A;  5KN9 A;  1DIZ A;  1KG4 A;  1KO9 A;  1MUN A;  1KEA A;  1LWW A;  4B22 A;  2I5W A;  1WEF A;  2JHJ A;  4B24 A;  4B23 A;  2OFI A;  1PVS A;  4E9F A;  3KNT A;  2NOF A; 
#chains in the Genus database with same CATH topology
 3S6I A;  3L2W A;  1KG7 A;  3OYN A;  3CVS A;  3L2U A;  3R2X C;  4EW0 A;  1WEI A;  1YQM A;  3OYD A;  3LCN A;  3I0W A;  3IHO A;  3OS1 A;  1M3H A;  3OYB A;  4YPR A;  1KG5 A;  3KTU A;  1N3A A;  1NGN A;  2JG6 A;  3OH9 A;  3OYE A;  1XG7 A;  3OYM A;  4E7I A;  2JPS A;  1YQR A;  1M3Q A;  1N39 A;  5FRO A;  3CWT A;  1EBM A;  3L2V A;  4UNF A;  2V75 A;  1NKU A;  3N0U A;  4YPH A;  1HU0 A;  4OFA A;  3OYI A;  1YQK A;  3OYK A;  3S3N A;  2NOB A;  4E9G A;  3FHF A;  3CWS A;  4BE1 A;  1YQL A;  2YG8 A;  3L2Q A;  2YG9 A;  4OFE A;  1LWY A;  1P7M A;  3FSP A;  4ZTF A;  3I0X A;  4B21 A;  3OYL A;  5AN4 A;  4HSB A;  2ABK A;  3G0Q A;  5FRM A;  1LMZ A;  1PU8 A;  3CVT A;  1KG2 A;  1MUD A;  4EA5 A;  5DPK A;  4E9H A;  4E7H A;  1XQO A;  3FHG A;  4E9E A;  3OYA A;  4NZG A;  3OS0 A;  4BAC A;  2NOI A;  3CWU A;  1FN7 A;  3OGD A;  4BDZ A;  3VW4 A;  3OY9 A;  2H56 A;  5CHZ A;  4PII A;  1ORP A;  1VRL A;  1KG3 A;  3NNQ A;  4OFH A;  4E7L A;  2NOH A;  4AI4 A;  2W03 A;  1RRS A;  1RRQ A;  3F10 A;  1MPG A;  3L2R A;  4ZTJ A;  2JHN A;  1XQP A;  4UOB A;  4IKF A;  1LWV A;  3OS2 A;  4DK9 A;  4BE0 A;  4EW4 A;  1MUY A;  4AIA A;  4AI5 A;  2XHI A;  3D4V A;  5KN8 A;  4EJZ A;  3OYF A;  4YOQ A;  3OYH A;  2W04 A;  4EVV A;  2NOL A;  2OFK A;  4EA4 A;  1PU6 A;  1P59 A;  2NOE A;  1PU7 A;  2NOZ A;  3OH6 A;  4EJY A;  3CW7 A;  1KQJ A;  1ORN A;  1KG6 A;  3IH7 A;  4E7K A;  1N3C A;  1WEG A;  3CWA A;  3N5N X;  3F0Z A;  5KN9 A;  1DIZ A;  1KG4 A;  1KO9 A;  1MUN A;  5FRN A;  1U84 A;  1KEA A;  1LWW A;  3OYG A;  4B22 A;  4BDY A;  4E7J A;  2I5W A;  1WEF A;  4BE2 A;  2JHJ A;  4B24 A;  4B23 A;  2OFI A;  1PVS A;  4E9F A;  3KNT A;  3OYJ A;  3OYC A;  3S3O A;  3S3M A;  2NOF A; 
#chains in the Genus database with same CATH homology
 3S6I A;  1KG7 A;  3CVS A;  1YQM A;  4EW0 A;  1WEI A;  3I0W A;  3IHO A;  1M3H A;  4YPR A;  1KG5 A;  3KTU A;  1N3A A;  1NGN A;  2JG6 A;  3OH9 A;  1XG7 A;  1YQR A;  1M3Q A;  1N39 A;  3CWT A;  1EBM A;  4UNF A;  1NKU A;  3N0U A;  4YPH A;  1HU0 A;  4OFA A;  1YQK A;  2NOB A;  4E9G A;  3FHF A;  3CWS A;  1YQL A;  2YG8 A;  2YG9 A;  4OFE A;  1LWY A;  1P7M A;  3FSP A;  3I0X A;  4B21 A;  5AN4 A;  4HSB A;  2ABK A;  3G0Q A;  1LMZ A;  1PU8 A;  3CVT A;  1KG2 A;  1MUD A;  4EA5 A;  5DPK A;  4E9H A;  1XQO A;  3FHG A;  4E9E A;  2NOI A;  3CWU A;  1FN7 A;  3OGD A;  2H56 A;  5CHZ A;  4PII A;  1ORP A;  1VRL A;  1KG3 A;  4OFH A;  2NOH A;  4AI4 A;  1RRS A;  1RRQ A;  3F10 A;  1MPG A;  2JHN A;  1XQP A;  4UOB A;  1LWV A;  4DK9 A;  4EW4 A;  1MUY A;  4AIA A;  4AI5 A;  2XHI A;  3D4V A;  5KN8 A;  4EJZ A;  4YOQ A;  4EVV A;  2NOL A;  2OFK A;  4EA4 A;  1PU6 A;  1P59 A;  2NOE A;  1PU7 A;  2NOZ A;  3OH6 A;  4EJY A;  3CW7 A;  1KQJ A;  1ORN A;  1KG6 A;  3IH7 A;  1N3C A;  1WEG A;  3CWA A;  3N5N X;  3F0Z A;  5KN9 A;  1DIZ A;  1KG4 A;  1KO9 A;  1MUN A;  1KEA A;  1LWW A;  4B22 A;  2I5W A;  1WEF A;  2JHJ A;  4B24 A;  4B23 A;  2OFI A;  1PVS A;  4E9F A;  3KNT A;  2NOF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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