1P59A

Structure of a non-covalent endonuclease iii-dna complex
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
214
structure length
214
Chain Sequence
MLTKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*AP*AP*GP*AP*CP*GP*(5IU)P*GP*GP*AP*C)-3'
publication title Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
pubmed doi rcsb
source organism Geobacillus stearothermophilus
molecule tags Hydrolase/dna
total genus 73
structure length 214
sequence length 214
ec nomenclature
pdb deposition date 2003-04-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1p59A01
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1p59A02
1KG3A 1MUNA 3FSPA 2NOLA 2YG8A 2NOZA 1KG2A 1MUYA 5KN9A 1YQLA 1XQPA 3CWTA 3S6IA 1PU7A 4AIAA 3CWSA 3F10A 4B22A 4B24A 1RRQA 2H56A 4AI4A 2I5WA 1MPGA 4YPHA 3OH6A 1ORPA 3FHFA 1PU6A 4UOBA 5DPKA 2NOHA 2OFIA 3I0XA 1M3HA 1KG6A 1WEGA 4PIIA 4EJZA 5CHZA 1WEIA 1WEFA 1KEAA 3IHOA 3N5NX 4E9EA 1EBMA 4E9GA 1HU0A 3F0ZA 3FHGA 3KNTA 2ABKA 2JHNA 4EA5A 1LMZA 4DK9A 3N0UA 1YQMA 1ORNA 4OFHA 4E9HA 4OFEA 3OGDA 4B21A 1XQOA 2YG9A 3I0WA 2NOFA 4EW0A 4EVVA 4YOQA 1DIZA 1NKUA 1KO9A 3OH9A 1KG7A 1KQJA 2JG6A 5KN8A 3D4VA 4B23A 3CWUA 1KG5A 1LWVA 1LWYA 1MUDA 1N39A 3CWAA 4UNFA 4OFAA 1PVSA 3KTUA 1LWWA 1VRLA 1YQKA 2JHJA 1PU8A 1KG4A 2NOBA 1NGNA 3IH7A 4E9FA 2NOIA 4HSBA 2XHIA 3G0QA 1N3AA 1XG7A 3CW7A 5AN4A 3CVSA 1YQRA 4EA4A 1M3QA 4EW4A 1RRSA 3CVTA 2OFKA 2NOEA 4YPRA 1P59A 1P7MA 1FN7A 1N3CA 4EJYA 4AI5A
chains in the Genus database with same CATH superfamily
1KG3A 4E7IA 1MUNA 5FRMA 3FSPA 2NOLA 2YG8A 2NOZA 4IKFA 1KG2A 1MUYA 4E7HA 5KN9A 1YQLA 1XQPA 3OS0A 3CWTA 3S6IA 3OYAA 1PU7A 4AIAA 3CWSA 3F10A 4B22A 3S3OA 2W03A 4B24A 1RRQA 4BDZA 2H56A 4AI4A 2I5WA 1MPGA 3L2UA 4YPHA 3OYIA 3OH6A 3S3MA 1ORPA 3FHFA 1PU6A 3LCNA 4UOBA 5DPKA 2NOHA 3L2VA 2OFIA 3I0XA 4BE1A 1M3HA 1KG6A 3OYNA 1WEGA 4PIIA 3OYKA 3R2XC 4EJZA 5CHZA 1WEIA 1WEFA 1KEAA 3IHOA 3N5NX 4E9EA 1EBMA 4E9GA 2JPSA 4BE2A 1HU0A 3F0ZA 3FHGA 3KNTA 2ABKA 2JHNA 4BE0A 1LMZA 3OYDA 4EA5A 4DK9A 3OY9A 3N0UA 3OYLA 1YQMA 1ORNA 4OFHA 3OS2A 4E9HA 3NNQA 4OFEA 3OGDA 4B21A 4E7JA 1XQOA 2YG9A 3I0WA 2NOFA 4EW0A 3L2WA 4EVVA 4YOQA 1DIZA 3OYFA 1NKUA 3OYCA 4ZTFA 1KO9A 3OH9A 1KG7A 1KQJA 2JG6A 5KN8A 3S3NA 4ZTJA 3D4VA 4B23A 3CWUA 1KG5A 1LWVA 3OYJA 3L2QA 1LWYA 2W04A 1MUDA 1N39A 3OYEA 3CWAA 4UNFA 4OFAA 1PVSA 3KTUA 1LWWA 4E7KA 3OYMA 1VRLA 1YQKA 2JHJA 1PU8A 1KG4A 2NOBA 5FROA 5FRNA 1NGNA 3IH7A 4E9FA 3VW4A 2NOIA 4HSBA 4E7LA 2XHIA 3G0QA 2V75A 1N3AA 1XG7A 3CW7A 3OYHA 5AN4A 3CVSA 1YQRA 4EA4A 4BACA 1M3QA 4EW4A 4BDYA 1RRSA 3CVTA 2OFKA 1U84A 3OYBA 3OYGA 2NOEA 4YPRA 1P59A 1P7MA 1FN7A 1N3CA 3OS1A 4NZGA 4EJYA 3L2RA 4AI5A
chains in the Genus database with same CATH topology
1KG3A 1MUNA 3FSPA 2NOLA 2YG8A 2NOZA 1KG2A 1MUYA 5KN9A 1YQLA 1XQPA 3CWTA 3S6IA 1PU7A 4AIAA 3CWSA 3F10A 4B22A 4B24A 1RRQA 2H56A 4AI4A 2I5WA 1MPGA 4YPHA 3OH6A 1ORPA 3FHFA 1PU6A 4UOBA 5DPKA 2NOHA 2OFIA 3I0XA 1M3HA 1KG6A 1WEGA 4PIIA 4EJZA 5CHZA 1WEIA 1WEFA 1KEAA 3IHOA 3N5NX 4E9EA 1EBMA 4E9GA 1HU0A 3F0ZA 3FHGA 3KNTA 2ABKA 2JHNA 4EA5A 1LMZA 4DK9A 3N0UA 1YQMA 1ORNA 4OFHA 4E9HA 4OFEA 3OGDA 4B21A 1XQOA 2YG9A 3I0WA 2NOFA 4EW0A 4EVVA 4YOQA 1DIZA 1NKUA 1KO9A 3OH9A 1KG7A 1KQJA 2JG6A 5KN8A 3D4VA 4B23A 3CWUA 1KG5A 1LWVA 1LWYA 1MUDA 1N39A 3CWAA 4UNFA 4OFAA 1PVSA 3KTUA 1LWWA 1VRLA 1YQKA 2JHJA 1PU8A 1KG4A 2NOBA 1NGNA 3IH7A 4E9FA 2NOIA 4HSBA 2XHIA 3G0QA 1N3AA 1XG7A 3CW7A 5AN4A 3CVSA 1YQRA 4EA4A 1M3QA 4EW4A 1RRSA 3CVTA 2OFKA 2NOEA 4YPRA 1P59A 1P7MA 1FN7A 1N3CA 4EJYA 4AI5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KG3 A;  1MUN A;  3FSP A;  2NOL A;  2YG8 A;  2NOZ A;  1KG2 A;  1MUY A;  5KN9 A;  1YQL A;  1XQP A;  3CWT A;  3S6I A;  1PU7 A;  4AIA A;  3CWS A;  3F10 A;  4B22 A;  4B24 A;  1RRQ A;  2H56 A;  4AI4 A;  2I5W A;  1MPG A;  4YPH A;  3OH6 A;  1ORP A;  3FHF A;  1PU6 A;  4UOB A;  5DPK A;  2NOH A;  2OFI A;  3I0X A;  1M3H A;  1KG6 A;  1WEG A;  4PII A;  4EJZ A;  5CHZ A;  1WEI A;  1WEF A;  1KEA A;  3IHO A;  3N5N X;  4E9E A;  1EBM A;  4E9G A;  1HU0 A;  3F0Z A;  3FHG A;  3KNT A;  2ABK A;  2JHN A;  4EA5 A;  1LMZ A;  4DK9 A;  3N0U A;  1YQM A;  1ORN A;  4OFH A;  4E9H A;  4OFE A;  3OGD A;  4B21 A;  1XQO A;  2YG9 A;  3I0W A;  2NOF A;  4EW0 A;  4EVV A;  4YOQ A;  1DIZ A;  1NKU A;  1KO9 A;  3OH9 A;  1KG7 A;  1KQJ A;  2JG6 A;  5KN8 A;  3D4V A;  4B23 A;  3CWU A;  1KG5 A;  1LWV A;  1LWY A;  1MUD A;  1N39 A;  3CWA A;  4UNF A;  4OFA A;  1PVS A;  3KTU A;  1LWW A;  1VRL A;  1YQK A;  2JHJ A;  1PU8 A;  1KG4 A;  2NOB A;  1NGN A;  3IH7 A;  4E9F A;  2NOI A;  4HSB A;  2XHI A;  3G0Q A;  1N3A A;  1XG7 A;  3CW7 A;  5AN4 A;  3CVS A;  1YQR A;  4EA4 A;  1M3Q A;  4EW4 A;  1RRS A;  3CVT A;  2OFK A;  2NOE A;  4YPR A;  1P59 A;  1P7M A;  1FN7 A;  1N3C A;  4EJY A;  4AI5 A; 
#chains in the Genus database with same CATH topology
 1KG3 A;  4E7I A;  1MUN A;  5FRM A;  3FSP A;  2NOL A;  2YG8 A;  2NOZ A;  4IKF A;  1KG2 A;  1MUY A;  4E7H A;  5KN9 A;  1YQL A;  1XQP A;  3OS0 A;  3CWT A;  3S6I A;  3OYA A;  1PU7 A;  4AIA A;  3CWS A;  3F10 A;  4B22 A;  3S3O A;  2W03 A;  4B24 A;  1RRQ A;  4BDZ A;  2H56 A;  4AI4 A;  2I5W A;  1MPG A;  3L2U A;  4YPH A;  3OYI A;  3OH6 A;  3S3M A;  1ORP A;  3FHF A;  1PU6 A;  3LCN A;  4UOB A;  5DPK A;  2NOH A;  3L2V A;  2OFI A;  3I0X A;  4BE1 A;  1M3H A;  1KG6 A;  3OYN A;  1WEG A;  4PII A;  3OYK A;  3R2X C;  4EJZ A;  5CHZ A;  1WEI A;  1WEF A;  1KEA A;  3IHO A;  3N5N X;  4E9E A;  1EBM A;  4E9G A;  2JPS A;  4BE2 A;  1HU0 A;  3F0Z A;  3FHG A;  3KNT A;  2ABK A;  2JHN A;  4BE0 A;  1LMZ A;  3OYD A;  4EA5 A;  4DK9 A;  3OY9 A;  3N0U A;  3OYL A;  1YQM A;  1ORN A;  4OFH A;  3OS2 A;  4E9H A;  3NNQ A;  4OFE A;  3OGD A;  4B21 A;  4E7J A;  1XQO A;  2YG9 A;  3I0W A;  2NOF A;  4EW0 A;  3L2W A;  4EVV A;  4YOQ A;  1DIZ A;  3OYF A;  1NKU A;  3OYC A;  4ZTF A;  1KO9 A;  3OH9 A;  1KG7 A;  1KQJ A;  2JG6 A;  5KN8 A;  3S3N A;  4ZTJ A;  3D4V A;  4B23 A;  3CWU A;  1KG5 A;  1LWV A;  3OYJ A;  3L2Q A;  1LWY A;  2W04 A;  1MUD A;  1N39 A;  3OYE A;  3CWA A;  4UNF A;  4OFA A;  1PVS A;  3KTU A;  1LWW A;  4E7K A;  3OYM A;  1VRL A;  1YQK A;  2JHJ A;  1PU8 A;  1KG4 A;  2NOB A;  5FRO A;  5FRN A;  1NGN A;  3IH7 A;  4E9F A;  3VW4 A;  2NOI A;  4HSB A;  4E7L A;  2XHI A;  3G0Q A;  2V75 A;  1N3A A;  1XG7 A;  3CW7 A;  3OYH A;  5AN4 A;  3CVS A;  1YQR A;  4EA4 A;  4BAC A;  1M3Q A;  4EW4 A;  4BDY A;  1RRS A;  3CVT A;  2OFK A;  1U84 A;  3OYB A;  3OYG A;  2NOE A;  4YPR A;  1P59 A;  1P7M A;  1FN7 A;  1N3C A;  3OS1 A;  4NZG A;  4EJY A;  3L2R A;  4AI5 A; 
#chains in the Genus database with same CATH homology
 1KG3 A;  1MUN A;  3FSP A;  2NOL A;  2YG8 A;  2NOZ A;  1KG2 A;  1MUY A;  5KN9 A;  1YQL A;  1XQP A;  3CWT A;  3S6I A;  1PU7 A;  4AIA A;  3CWS A;  3F10 A;  4B22 A;  4B24 A;  1RRQ A;  2H56 A;  4AI4 A;  2I5W A;  1MPG A;  4YPH A;  3OH6 A;  1ORP A;  3FHF A;  1PU6 A;  4UOB A;  5DPK A;  2NOH A;  2OFI A;  3I0X A;  1M3H A;  1KG6 A;  1WEG A;  4PII A;  4EJZ A;  5CHZ A;  1WEI A;  1WEF A;  1KEA A;  3IHO A;  3N5N X;  4E9E A;  1EBM A;  4E9G A;  1HU0 A;  3F0Z A;  3FHG A;  3KNT A;  2ABK A;  2JHN A;  4EA5 A;  1LMZ A;  4DK9 A;  3N0U A;  1YQM A;  1ORN A;  4OFH A;  4E9H A;  4OFE A;  3OGD A;  4B21 A;  1XQO A;  2YG9 A;  3I0W A;  2NOF A;  4EW0 A;  4EVV A;  4YOQ A;  1DIZ A;  1NKU A;  1KO9 A;  3OH9 A;  1KG7 A;  1KQJ A;  2JG6 A;  5KN8 A;  3D4V A;  4B23 A;  3CWU A;  1KG5 A;  1LWV A;  1LWY A;  1MUD A;  1N39 A;  3CWA A;  4UNF A;  4OFA A;  1PVS A;  3KTU A;  1LWW A;  1VRL A;  1YQK A;  2JHJ A;  1PU8 A;  1KG4 A;  2NOB A;  1NGN A;  3IH7 A;  4E9F A;  2NOI A;  4HSB A;  2XHI A;  3G0Q A;  1N3A A;  1XG7 A;  3CW7 A;  5AN4 A;  3CVS A;  1YQR A;  4EA4 A;  1M3Q A;  4EW4 A;  1RRS A;  3CVT A;  2OFK A;  2NOE A;  4YPR A;  1P59 A;  1P7M A;  1FN7 A;  1N3C A;  4EJY A;  4AI5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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