3CVTA

Crystal structure of an alka host/guest complex 8oxoguanine:cytosine base pair
Total Genus 85
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
282
structure length
282
Chain Sequence
MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase/dna
source organism Escherichia coli
publication title Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA.
pubmed doi rcsb
molecule keywords DNA-3-methyladenine glycosylase 2
total genus 85
structure length 282
sequence length 282
chains with identical sequence B, C, D
ec nomenclature ec 3.2.2.21: DNA-3-methyladenine glycosylase II.
pdb deposition date 2008-04-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
A PF06029 AlkA_N AlkA N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 3cvtA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 3cvtA03
3.30.310.20 Alpha Beta 2-Layer Sandwich TATA-Binding Protein DNA-3-methyladenine glycosylase AlkA, N-terminal domain 3cvtA01
3FSPA 3OH9A 3CWUA 3KNTA 1MPGA 5AN4A 1NGNA 4B24A 1MUYA 3CVTA 1LWVA 4E9HA 3CVSA 3FHFA 4DK9A 1LWYA 1M3QA 2I5WA 1KQJA 2NOEA 1KG2A 1KG4A 2OFKA 3I0XA 4EW0A 1YQKA 2XHIA 4YPHA 1YQMA 4EA4A 3CWAA 1HU0A 4OFHA 4E9FA 1YQLA 4EVVA 1LMZA 1XQPA 2NOIA 1KG6A 1N3CA 1EBMA 3OGDA 3I0WA 1DIZA 1RRQA 2YG9A 2NOBA 1KEAA 4UOBA 4E9EA 4OFAA 2NOHA 2H56A 4B23A 1WEIA 5KN8A 3IHOA 1XG7A 4EJZA 1RRSA 3CWSA 3F0ZA 1KG5A 1PU8A 1ORPA 3KTUA 4HSBA 1MUDA 4YPRA 4PIIA 2NOLA 2ABKA 3FHGA 1YQRA 2YG8A 1KG3A 4E9GA 2NOFA 2NOZA 3F10A 1NKUA 4OFEA 1PU6A 2JHJA 3N0UA 2OFIA 1WEFA 4AI5A 5CHZA 4B22A 4EA5A 5DPKA 1VRLA 1MUNA 5KN9A 1M3HA 1N3AA 4YOQA 1KO9A 3IH7A 1PVSA 3CWTA 4UNFA 1WEGA 1ORNA 1LWWA 3CW7A 1P7MA 3G0QA 1XQOA 1P59A 2JG6A 4EW4A 1N39A 4EJYA 2JHNA 1FN7A 4AIAA 4B21A 3S6IA 1PU7A 1KG7A 3OH6A 3D4VA 4AI4A 3N5NX
chains in the Genus database with same CATH superfamily
4EAIA 1PZDA 3OH9A 2PWWA 3KNTA 1YTFA 1MPGA 5AN4A 1NGNA 2NWVA 1KYDA 4EAGA 1LWVA 4E9HA 2OOYA 1C47A 3S3OA 4ROEB 3TDHA 3RSMA 1PCZA 1KG4A 1QN9A 4EW0A 1J3MA 2JPSA 3OYMA 4EA4A 5IYDP 3OS1A 3OYLA 3DPUA 4EVVA 2NOIA 1KG6A 3I0WA 3OY9A 4PY5A 1Q9UA 1KEAA 4E9EA 3KRMA 4OFAA 1CDWA 1WEIA 1VTLE 3F0ZA 1KG5A 1LXTA 1PCJX 4IL8A 4TPSA 4I8OA 2IV8A 3LCNA 1UL7A 1KY6A 2D0BA 4RODB 2YG8A 3ENOC 2QLVA 2EHBD 1VOLB 1WQAA 4BE0A 2FKFA 1KYFA 2HL9A 1PU6A 2YA3A 4B0AA 4BDZA 1VTOA 1MUNA 3S3NA 3IH7A 1PVSA 3PDKA 3VN5A 3CW7A 3SNSA 4D7RA 1WJWA 1TUOA 4ROCB 4EJYA 5FRMA 3ENCA 1PU7A 1KG7A 3OH6A 3OYBA 1NGMA 5FRNA 2Y8LA 1YTBA 2NVMA 3OSMA 3OYJA 4E7KA 1QN3A 2H4LX 3L2UA 1T6AA 4BJUA 1LWYA 2I5WA 1KQJA 2VJ0A 4CFFA 2XHIA 4YPHA 1TBAB 4E7JA 4E7IA 4OFHA 1YQLA 4Q11A 2HKPA 4BE1A 3S3MA 1R4XA 2V75A 5IYBP 3D7QA 1KFIA 5IYCP 1EBMA 2V8QA 3RPJA 1RRQA 1RM1A 2NLVA 5FROA 4ZTFA 3NA5A 3IHOA 2Z8UA 4EJZA 1VKLA 1RRSA 2YH5A 1QNBA 1ORPA 1MUDA 4YPRA 5JMVD 4PIIA 4IKFA 1YQRA 3F10A 2DKAA 1NKUA 4E7LA 1MP9A 4BACA 4WXAA 2OFIA 1WEFA 4AI5A 2DKCA 3PMGA 5DPKA 1VRLA 1M3HA 1N3AA 4NZGA 2OOXA 4ZTJA 4WZSD 2QRDA 1P5DX 2Y8QA 3UW2A 3EIKA 3OYCA 4QG5A 2D0CA 4EALA 3S6IA 4E7HA 1B9KA 3OYHA 1VOKA 1TGHA 2FGTA 1QNEA 4MRQA 5KL0A 3OYAA 1MUYA 1KYUA 1NVPA 2W03A 2F7LA 1E42A 1UT4A 3CVSA 3FHFA 4DK9A 4BE2A 1M3QA 3L2VA 2MJ7A 1V5SA 1KG2A 1EUVA 3N89A 3I0XA 1YQKA 1AISA 3OYNA 2V9JA 1HU0A 2IV9A 2G30A 2HZMA 5BMPA 3OS2A 1QN4A 3OYDA 1LMZA 2QRCA 4EAKA 1DIZA 3OLPA 5BMNA 3HS8A 1UT7A 4B23A 3CWSA 1PU8A 2H5AX 4HSBA 3DPTA 1KFQA 5JN5A 2NOLA 3L2WA 4E9GA 2NOFA 2NOZA 3OSTA 1QNCA 5EPCA 4OFEA 3N0UA 3L2RA 5CHZA 5KN9A 1QN8A 3R2XC 4WX8A 4UNFA 1ORNA 5HSHA 1C9BB 4D7QA 3G0QA 1XQOA 2R5XA 2JG6A 4EW4A 4DULA 1FN7A 2JOIA 4EAJA 3BKQX 1QTSA 3N5NX 3H1ZA 3ULXA 1QNAA 2FKMX 4HJHA 3FSPA 3CWUA 3VW4A 5F9CA 1QN5A 4B24A 1QTPA 3OSEA 1D3UA 3CVTA 4BDYA 1KY7A 4C7PA 2HL8A 2NOEA 2ZFDB 1K35A 2OFKA 3EAYA 1YQMA 3OYEA 3TE5A 2QR1A 3CWAA 1JDYA 2W04A 3C04A 4E9FA 1P5GX 3ASMA 1NH2A 1XQPA 1N3CA 1K2YX 3OGDA 2LAEA 2FUVA 3OYKA 3L2QA 2Z0FA 2YG9A 2NOBA 2DKDA 3NNQA 1JFIC 2V92A 4UOBA 3I3WA 2NOHA 2H56A 5KN8A 1XG7A 3OC3C 1QN6A 3OYIA 3KTUA 1W80A 2QREA 2HZSA 2ABKA 3FHGA 1KG3A 3OCIA 3T4NA 3HS9A 2JPIA 2D0AA 2JHJA 3OYGA 1C4GA 1XSZA 3OYFA 4B22A 2MZ8A 4EA5A 1PCMX 4YOQA 1KO9A 3CWTA 1WEGA 1LWWA 1P7MA 1U84A 1TBPA 3OS0A 1P59A 1N39A 2JHNA 4AIAA 4B21A 1QN7A 2O3OA 3D4VA 4AI4A 1M5Q1
chains in the Genus database with same CATH topology
3FSPA 3OH9A 3CWUA 3KNTA 1MPGA 5AN4A 1NGNA 4B24A 1MUYA 3CVTA 1LWVA 4E9HA 3CVSA 3FHFA 4DK9A 1LWYA 1M3QA 2I5WA 1KQJA 2NOEA 1KG2A 1KG4A 2OFKA 3I0XA 4EW0A 1YQKA 2XHIA 4YPHA 1YQMA 4EA4A 3CWAA 1HU0A 4OFHA 4E9FA 1YQLA 4EVVA 1LMZA 1XQPA 2NOIA 1KG6A 1N3CA 1EBMA 3OGDA 3I0WA 1DIZA 1RRQA 2YG9A 2NOBA 1KEAA 4UOBA 4E9EA 4OFAA 2NOHA 2H56A 4B23A 1WEIA 5KN8A 3IHOA 1XG7A 4EJZA 1RRSA 3CWSA 3F0ZA 1KG5A 1PU8A 1ORPA 3KTUA 4HSBA 1MUDA 4YPRA 4PIIA 2NOLA 2ABKA 3FHGA 1YQRA 2YG8A 1KG3A 4E9GA 2NOFA 2NOZA 3F10A 1NKUA 4OFEA 1PU6A 2JHJA 3N0UA 2OFIA 1WEFA 4AI5A 5CHZA 4B22A 4EA5A 5DPKA 1VRLA 1MUNA 5KN9A 1M3HA 1N3AA 4YOQA 1KO9A 3IH7A 1PVSA 3CWTA 4UNFA 1WEGA 1ORNA 1LWWA 3CW7A 1P7MA 3G0QA 1XQOA 1P59A 2JG6A 4EW4A 1N39A 4EJYA 2JHNA 1FN7A 4AIAA 4B21A 3S6IA 1PU7A 1KG7A 3OH6A 3D4VA 4AI4A 3N5NX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FSP A;  3OH9 A;  3CWU A;  3KNT A;  1MPG A;  5AN4 A;  1NGN A;  4B24 A;  1MUY A;  3CVT A;  1LWV A;  4E9H A;  3CVS A;  3FHF A;  4DK9 A;  1LWY A;  1M3Q A;  2I5W A;  1KQJ A;  2NOE A;  1KG2 A;  1KG4 A;  2OFK A;  3I0X A;  4EW0 A;  1YQK A;  2XHI A;  4YPH A;  1YQM A;  4EA4 A;  3CWA A;  1HU0 A;  4OFH A;  4E9F A;  1YQL A;  4EVV A;  1LMZ A;  1XQP A;  2NOI A;  1KG6 A;  1N3C A;  1EBM A;  3OGD A;  3I0W A;  1DIZ A;  1RRQ A;  2YG9 A;  2NOB A;  1KEA A;  4UOB A;  4E9E A;  4OFA A;  2NOH A;  2H56 A;  4B23 A;  1WEI A;  5KN8 A;  3IHO A;  1XG7 A;  4EJZ A;  1RRS A;  3CWS A;  3F0Z A;  1KG5 A;  1PU8 A;  1ORP A;  3KTU A;  4HSB A;  1MUD A;  4YPR A;  4PII A;  2NOL A;  2ABK A;  3FHG A;  1YQR A;  2YG8 A;  1KG3 A;  4E9G A;  2NOF A;  2NOZ A;  3F10 A;  1NKU A;  4OFE A;  1PU6 A;  2JHJ A;  3N0U A;  2OFI A;  1WEF A;  4AI5 A;  5CHZ A;  4B22 A;  4EA5 A;  5DPK A;  1VRL A;  1MUN A;  5KN9 A;  1M3H A;  1N3A A;  4YOQ A;  1KO9 A;  3IH7 A;  1PVS A;  3CWT A;  4UNF A;  1WEG A;  1ORN A;  1LWW A;  3CW7 A;  1P7M A;  3G0Q A;  1XQO A;  1P59 A;  2JG6 A;  4EW4 A;  1N39 A;  4EJY A;  2JHN A;  1FN7 A;  4AIA A;  4B21 A;  3S6I A;  1PU7 A;  1KG7 A;  3OH6 A;  3D4V A;  4AI4 A;  3N5N X; 
#chains in the Genus database with same CATH topology
 4EAI A;  1PZD A;  3OH9 A;  2PWW A;  3KNT A;  1YTF A;  1MPG A;  5AN4 A;  1NGN A;  2NWV A;  1KYD A;  4EAG A;  1LWV A;  4E9H A;  2OOY A;  1C47 A;  3S3O A;  4ROE B;  3TDH A;  3RSM A;  1PCZ A;  1KG4 A;  1QN9 A;  4EW0 A;  1J3M A;  2JPS A;  3OYM A;  4EA4 A;  5IYD P;  3OS1 A;  3OYL A;  3DPU A;  4EVV A;  2NOI A;  1KG6 A;  3I0W A;  3OY9 A;  4PY5 A;  1Q9U A;  1KEA A;  4E9E A;  3KRM A;  4OFA A;  1CDW A;  1WEI A;  1VTL E;  3F0Z A;  1KG5 A;  1LXT A;  1PCJ X;  4IL8 A;  4TPS A;  4I8O A;  2IV8 A;  3LCN A;  1UL7 A;  1KY6 A;  2D0B A;  4ROD B;  2YG8 A;  3ENO C;  2QLV A;  2EHB D;  1VOL B;  1WQA A;  4BE0 A;  2FKF A;  1KYF A;  2HL9 A;  1PU6 A;  2YA3 A;  4B0A A;  4BDZ A;  1VTO A;  1MUN A;  3S3N A;  3IH7 A;  1PVS A;  3PDK A;  3VN5 A;  3CW7 A;  3SNS A;  4D7R A;  1WJW A;  1TUO A;  4ROC B;  4EJY A;  5FRM A;  3ENC A;  1PU7 A;  1KG7 A;  3OH6 A;  3OYB A;  1NGM A;  5FRN A;  2Y8L A;  1YTB A;  2NVM A;  3OSM A;  3OYJ A;  4E7K A;  1QN3 A;  2H4L X;  3L2U A;  1T6A A;  4BJU A;  1LWY A;  2I5W A;  1KQJ A;  2VJ0 A;  4CFF A;  2XHI A;  4YPH A;  1TBA B;  4E7J A;  4E7I A;  4OFH A;  1YQL A;  4Q11 A;  2HKP A;  4BE1 A;  3S3M A;  1R4X A;  2V75 A;  5IYB P;  3D7Q A;  1KFI A;  5IYC P;  1EBM A;  2V8Q A;  3RPJ A;  1RRQ A;  1RM1 A;  2NLV A;  5FRO A;  4ZTF A;  3NA5 A;  3IHO A;  2Z8U A;  4EJZ A;  1VKL A;  1RRS A;  2YH5 A;  1QNB A;  1ORP A;  1MUD A;  4YPR A;  5JMV D;  4PII A;  4IKF A;  1YQR A;  3F10 A;  2DKA A;  1NKU A;  4E7L A;  1MP9 A;  4BAC A;  4WXA A;  2OFI A;  1WEF A;  4AI5 A;  2DKC A;  3PMG A;  5DPK A;  1VRL A;  1M3H A;  1N3A A;  4NZG A;  2OOX A;  4ZTJ A;  4WZS D;  2QRD A;  1P5D X;  2Y8Q A;  3UW2 A;  3EIK A;  3OYC A;  4QG5 A;  2D0C A;  4EAL A;  3S6I A;  4E7H A;  1B9K A;  3OYH A;  1VOK A;  1TGH A;  2FGT A;  1QNE A;  4MRQ A;  5KL0 A;  3OYA A;  1MUY A;  1KYU A;  1NVP A;  2W03 A;  2F7L A;  1E42 A;  1UT4 A;  3CVS A;  3FHF A;  4DK9 A;  4BE2 A;  1M3Q A;  3L2V A;  2MJ7 A;  1V5S A;  1KG2 A;  1EUV A;  3N89 A;  3I0X A;  1YQK A;  1AIS A;  3OYN A;  2V9J A;  1HU0 A;  2IV9 A;  2G30 A;  2HZM A;  5BMP A;  3OS2 A;  1QN4 A;  3OYD A;  1LMZ A;  2QRC A;  4EAK A;  1DIZ A;  3OLP A;  5BMN A;  3HS8 A;  1UT7 A;  4B23 A;  3CWS A;  1PU8 A;  2H5A X;  4HSB A;  3DPT A;  1KFQ A;  5JN5 A;  2NOL A;  3L2W A;  4E9G A;  2NOF A;  2NOZ A;  3OST A;  1QNC A;  5EPC A;  4OFE A;  3N0U A;  3L2R A;  5CHZ A;  5KN9 A;  1QN8 A;  3R2X C;  4WX8 A;  4UNF A;  1ORN A;  5HSH A;  1C9B B;  4D7Q A;  3G0Q A;  1XQO A;  2R5X A;  2JG6 A;  4EW4 A;  4DUL A;  1FN7 A;  2JOI A;  4EAJ A;  3BKQ X;  1QTS A;  3N5N X;  3H1Z A;  3ULX A;  1QNA A;  2FKM X;  4HJH A;  3FSP A;  3CWU A;  3VW4 A;  5F9C A;  1QN5 A;  4B24 A;  1QTP A;  3OSE A;  1D3U A;  3CVT A;  4BDY A;  1KY7 A;  4C7P A;  2HL8 A;  2NOE A;  2ZFD B;  1K35 A;  2OFK A;  3EAY A;  1YQM A;  3OYE A;  3TE5 A;  2QR1 A;  3CWA A;  1JDY A;  2W04 A;  3C04 A;  4E9F A;  1P5G X;  3ASM A;  1NH2 A;  1XQP A;  1N3C A;  1K2Y X;  3OGD A;  2LAE A;  2FUV A;  3OYK A;  3L2Q A;  2Z0F A;  2YG9 A;  2NOB A;  2DKD A;  3NNQ A;  1JFI C;  2V92 A;  4UOB A;  3I3W A;  2NOH A;  2H56 A;  5KN8 A;  1XG7 A;  3OC3 C;  1QN6 A;  3OYI A;  3KTU A;  1W80 A;  2QRE A;  2HZS A;  2ABK A;  3FHG A;  1KG3 A;  3OCI A;  3T4N A;  3HS9 A;  2JPI A;  2D0A A;  2JHJ A;  3OYG A;  1C4G A;  1XSZ A;  3OYF A;  4B22 A;  2MZ8 A;  4EA5 A;  1PCM X;  4YOQ A;  1KO9 A;  3CWT A;  1WEG A;  1LWW A;  1P7M A;  1U84 A;  1TBP A;  3OS0 A;  1P59 A;  1N39 A;  2JHN A;  4AIA A;  4B21 A;  1QN7 A;  2O3O A;  3D4V A;  4AI4 A;  1M5Q 1; 
#chains in the Genus database with same CATH homology
 3FSP A;  3OH9 A;  3CWU A;  3KNT A;  1MPG A;  5AN4 A;  1NGN A;  4B24 A;  1MUY A;  3CVT A;  1LWV A;  4E9H A;  3CVS A;  3FHF A;  4DK9 A;  1LWY A;  1M3Q A;  2I5W A;  1KQJ A;  2NOE A;  1KG2 A;  1KG4 A;  2OFK A;  3I0X A;  4EW0 A;  1YQK A;  2XHI A;  4YPH A;  1YQM A;  4EA4 A;  3CWA A;  1HU0 A;  4OFH A;  4E9F A;  1YQL A;  4EVV A;  1LMZ A;  1XQP A;  2NOI A;  1KG6 A;  1N3C A;  1EBM A;  3OGD A;  3I0W A;  1DIZ A;  1RRQ A;  2YG9 A;  2NOB A;  1KEA A;  4UOB A;  4E9E A;  4OFA A;  2NOH A;  2H56 A;  4B23 A;  1WEI A;  5KN8 A;  3IHO A;  1XG7 A;  4EJZ A;  1RRS A;  3CWS A;  3F0Z A;  1KG5 A;  1PU8 A;  1ORP A;  3KTU A;  4HSB A;  1MUD A;  4YPR A;  4PII A;  2NOL A;  2ABK A;  3FHG A;  1YQR A;  2YG8 A;  1KG3 A;  4E9G A;  2NOF A;  2NOZ A;  3F10 A;  1NKU A;  4OFE A;  1PU6 A;  2JHJ A;  3N0U A;  2OFI A;  1WEF A;  4AI5 A;  5CHZ A;  4B22 A;  4EA5 A;  5DPK A;  1VRL A;  1MUN A;  5KN9 A;  1M3H A;  1N3A A;  4YOQ A;  1KO9 A;  3IH7 A;  1PVS A;  3CWT A;  4UNF A;  1WEG A;  1ORN A;  1LWW A;  3CW7 A;  1P7M A;  3G0Q A;  1XQO A;  1P59 A;  2JG6 A;  4EW4 A;  1N39 A;  4EJY A;  2JHN A;  1FN7 A;  4AIA A;  4B21 A;  3S6I A;  1PU7 A;  1KG7 A;  3OH6 A;  3D4V A;  4AI4 A;  3N5N X; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...