5CHZA

Structure of wild-type human mbd4 bound to a g:t mismatch
Total Genus 47
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
140
structure length
140
Chain Sequence
WTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna
source organism Homo sapiens
publication title Structure of wild-type human MBD4 bound to a G:T mismatch
rcsb
molecule keywords Methyl-CpG-binding domain protein 4
total genus 47
structure length 140
sequence length 140
ec nomenclature ec 3.2.2.-:
pdb deposition date 2015-07-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 5chzA00
1YQRA 1NKUA 2NOFA 1VRLA 1LWWA 4OFEA 1PU6A 4EA5A 1P7MA 3D4VA 2XHIA 4AI5A 3FHFA 2YG9A 4E9GA 2OFKA 1MUNA 1M3QA 2H56A 5KN9A 4HSBA 4EA4A 1ORPA 4YPHA 3IHOA 4EW0A 1XQOA 1KG3A 4YPRA 1KO9A 3IH7A 1LWYA 2YG8A 1EBMA 2NOEA 3CWAA 1YQLA 2OFIA 4PIIA 1WEIA 2JHNA 2NOZA 1P59A 1XG7A 3S6IA 1M3HA 2JG6A 1KEAA 4B22A 1ORNA 3FSPA 3N5NX 4AIAA 4E9EA 2NOHA 1DIZA 5CHZA 1N3AA 5DPKA 1KG6A 2I5WA 1KG4A 5AN4A 4B24A 1N3CA 1NGNA 4B21A 2NOBA 4AI4A 4EJYA 3OGDA 2ABKA 3CWSA 1PU8A 1KG7A 2JHJA 3F10A 1PVSA 1HU0A 3CWUA 1YQKA 1MUYA 1N39A 2NOIA 1KG2A 4DK9A 3CVTA 1KG5A 3OH6A 1RRQA 3KNTA 1WEFA 4E9FA 3OH9A 1MPGA 4EVVA 3CW7A 3I0WA 1WEGA 2NOLA 3FHGA 3F0ZA 4OFAA 1FN7A 4UOBA 1LMZA 1XQPA 4E9HA 3CWTA 3G0QA 4OFHA 3KTUA 1KQJA 1YQMA 3CVSA 4B23A 4EW4A 3I0XA 1RRSA 3N0UA 4EJZA 1MUDA 4UNFA 5KN8A 4YOQA 1PU7A 1LWVA
chains in the Genus database with same CATH superfamily
1YQRA 1NKUA 4E7JA 3OYHA 2NOFA 1VRLA 1LWWA 4E7IA 4OFEA 3OYIA 1PU6A 4EA5A 1P7MA 4ZTJA 4NZGA 2XHIA 3D4VA 4E7KA 4AI5A 3FHFA 3OYMA 3NNQA 2YG9A 4E9GA 2OFKA 1MUNA 1M3QA 2H56A 5KN9A 4HSBA 4EA4A 1ORPA 4YPHA 3IHOA 4EW0A 1XQOA 5FRMA 1KG3A 4YPRA 1KO9A 3IH7A 3VW4A 1LWYA 2YG8A 1EBMA 4BE0A 2NOEA 3CWAA 1YQLA 2OFIA 4PIIA 1WEIA 2JHNA 2NOZA 1P59A 1XG7A 3S6IA 1M3HA 2JG6A 1KEAA 4B22A 1ORNA 4ZTFA 3FSPA 4E7LA 3N5NX 4AIAA 4E9EA 2NOHA 1DIZA 5CHZA 4BACA 3OS0A 1N3AA 5DPKA 1KG6A 2I5WA 1KG4A 5AN4A 4B24A 1N3CA 1NGNA 3LCNA 4B21A 3S3OA 2NOBA 2W04A 4AI4A 3R2XC 3OY9A 4EJYA 3OGDA 4BE2A 3OYFA 2ABKA 3OYEA 3CWSA 1PU8A 1KG7A 2JHJA 3F10A 1PVSA 5FROA 3OS2A 1HU0A 3CWUA 5FRNA 1YQKA 1MUYA 2JPSA 1N39A 2NOIA 1KG2A 4DK9A 3CVTA 1KG5A 3OH6A 1RRQA 1U84A 3KNTA 1WEFA 4E9FA 3L2RA 3OH9A 3L2VA 1MPGA 4EVVA 4BDZA 3OYGA 3OYKA 3CW7A 3L2WA 3L2QA 3I0WA 4IKFA 1WEGA 3S3MA 2NOLA 3FHGA 3F0ZA 4OFAA 1FN7A 4E7HA 4UOBA 1LMZA 1XQPA 4E9HA 3S3NA 3CWTA 3OS1A 3OYAA 3G0QA 4OFHA 3OYNA 4BE1A 3KTUA 1KQJA 1YQMA 3OYJA 3CVSA 4B23A 4BDYA 4EW4A 3OYLA 2V75A 3I0XA 1RRSA 3OYCA 2W03A 3N0UA 3OYBA 3L2UA 4EJZA 1MUDA 4UNFA 5KN8A 4YOQA 3OYDA 1PU7A 1LWVA
chains in the Genus database with same CATH topology
1YQRA 1NKUA 2NOFA 1VRLA 1LWWA 4OFEA 1PU6A 4EA5A 1P7MA 3D4VA 2XHIA 4AI5A 3FHFA 2YG9A 4E9GA 2OFKA 1MUNA 1M3QA 2H56A 5KN9A 4HSBA 4EA4A 1ORPA 4YPHA 3IHOA 4EW0A 1XQOA 1KG3A 4YPRA 1KO9A 3IH7A 1LWYA 2YG8A 1EBMA 2NOEA 3CWAA 1YQLA 2OFIA 4PIIA 1WEIA 2JHNA 2NOZA 1P59A 1XG7A 3S6IA 1M3HA 2JG6A 1KEAA 4B22A 1ORNA 3FSPA 3N5NX 4AIAA 4E9EA 2NOHA 1DIZA 5CHZA 1N3AA 5DPKA 1KG6A 2I5WA 1KG4A 5AN4A 4B24A 1N3CA 1NGNA 4B21A 2NOBA 4AI4A 4EJYA 3OGDA 2ABKA 3CWSA 1PU8A 1KG7A 2JHJA 3F10A 1PVSA 1HU0A 3CWUA 1YQKA 1MUYA 1N39A 2NOIA 1KG2A 4DK9A 3CVTA 1KG5A 3OH6A 1RRQA 3KNTA 1WEFA 4E9FA 3OH9A 1MPGA 4EVVA 3CW7A 3I0WA 1WEGA 2NOLA 3FHGA 3F0ZA 4OFAA 1FN7A 4UOBA 1LMZA 1XQPA 4E9HA 3CWTA 3G0QA 4OFHA 3KTUA 1KQJA 1YQMA 3CVSA 4B23A 4EW4A 3I0XA 1RRSA 3N0UA 4EJZA 1MUDA 4UNFA 5KN8A 4YOQA 1PU7A 1LWVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQR A;  1NKU A;  2NOF A;  1VRL A;  1LWW A;  4OFE A;  1PU6 A;  4EA5 A;  1P7M A;  3D4V A;  2XHI A;  4AI5 A;  3FHF A;  2YG9 A;  4E9G A;  2OFK A;  1MUN A;  1M3Q A;  2H56 A;  5KN9 A;  4HSB A;  4EA4 A;  1ORP A;  4YPH A;  3IHO A;  4EW0 A;  1XQO A;  1KG3 A;  4YPR A;  1KO9 A;  3IH7 A;  1LWY A;  2YG8 A;  1EBM A;  2NOE A;  3CWA A;  1YQL A;  2OFI A;  4PII A;  1WEI A;  2JHN A;  2NOZ A;  1P59 A;  1XG7 A;  3S6I A;  1M3H A;  2JG6 A;  1KEA A;  4B22 A;  1ORN A;  3FSP A;  3N5N X;  4AIA A;  4E9E A;  2NOH A;  1DIZ A;  5CHZ A;  1N3A A;  5DPK A;  1KG6 A;  2I5W A;  1KG4 A;  5AN4 A;  4B24 A;  1N3C A;  1NGN A;  4B21 A;  2NOB A;  4AI4 A;  4EJY A;  3OGD A;  2ABK A;  3CWS A;  1PU8 A;  1KG7 A;  2JHJ A;  3F10 A;  1PVS A;  1HU0 A;  3CWU A;  1YQK A;  1MUY A;  1N39 A;  2NOI A;  1KG2 A;  4DK9 A;  3CVT A;  1KG5 A;  3OH6 A;  1RRQ A;  3KNT A;  1WEF A;  4E9F A;  3OH9 A;  1MPG A;  4EVV A;  3CW7 A;  3I0W A;  1WEG A;  2NOL A;  3FHG A;  3F0Z A;  4OFA A;  1FN7 A;  4UOB A;  1LMZ A;  1XQP A;  4E9H A;  3CWT A;  3G0Q A;  4OFH A;  3KTU A;  1KQJ A;  1YQM A;  3CVS A;  4B23 A;  4EW4 A;  3I0X A;  1RRS A;  3N0U A;  4EJZ A;  1MUD A;  4UNF A;  5KN8 A;  4YOQ A;  1PU7 A;  1LWV A; 
#chains in the Genus database with same CATH topology
 1YQR A;  1NKU A;  4E7J A;  3OYH A;  2NOF A;  1VRL A;  1LWW A;  4E7I A;  4OFE A;  3OYI A;  1PU6 A;  4EA5 A;  1P7M A;  4ZTJ A;  4NZG A;  2XHI A;  3D4V A;  4E7K A;  4AI5 A;  3FHF A;  3OYM A;  3NNQ A;  2YG9 A;  4E9G A;  2OFK A;  1MUN A;  1M3Q A;  2H56 A;  5KN9 A;  4HSB A;  4EA4 A;  1ORP A;  4YPH A;  3IHO A;  4EW0 A;  1XQO A;  5FRM A;  1KG3 A;  4YPR A;  1KO9 A;  3IH7 A;  3VW4 A;  1LWY A;  2YG8 A;  1EBM A;  4BE0 A;  2NOE A;  3CWA A;  1YQL A;  2OFI A;  4PII A;  1WEI A;  2JHN A;  2NOZ A;  1P59 A;  1XG7 A;  3S6I A;  1M3H A;  2JG6 A;  1KEA A;  4B22 A;  1ORN A;  4ZTF A;  3FSP A;  4E7L A;  3N5N X;  4AIA A;  4E9E A;  2NOH A;  1DIZ A;  5CHZ A;  4BAC A;  3OS0 A;  1N3A A;  5DPK A;  1KG6 A;  2I5W A;  1KG4 A;  5AN4 A;  4B24 A;  1N3C A;  1NGN A;  3LCN A;  4B21 A;  3S3O A;  2NOB A;  2W04 A;  4AI4 A;  3R2X C;  3OY9 A;  4EJY A;  3OGD A;  4BE2 A;  3OYF A;  2ABK A;  3OYE A;  3CWS A;  1PU8 A;  1KG7 A;  2JHJ A;  3F10 A;  1PVS A;  5FRO A;  3OS2 A;  1HU0 A;  3CWU A;  5FRN A;  1YQK A;  1MUY A;  2JPS A;  1N39 A;  2NOI A;  1KG2 A;  4DK9 A;  3CVT A;  1KG5 A;  3OH6 A;  1RRQ A;  1U84 A;  3KNT A;  1WEF A;  4E9F A;  3L2R A;  3OH9 A;  3L2V A;  1MPG A;  4EVV A;  4BDZ A;  3OYG A;  3OYK A;  3CW7 A;  3L2W A;  3L2Q A;  3I0W A;  4IKF A;  1WEG A;  3S3M A;  2NOL A;  3FHG A;  3F0Z A;  4OFA A;  1FN7 A;  4E7H A;  4UOB A;  1LMZ A;  1XQP A;  4E9H A;  3S3N A;  3CWT A;  3OS1 A;  3OYA A;  3G0Q A;  4OFH A;  3OYN A;  4BE1 A;  3KTU A;  1KQJ A;  1YQM A;  3OYJ A;  3CVS A;  4B23 A;  4BDY A;  4EW4 A;  3OYL A;  2V75 A;  3I0X A;  1RRS A;  3OYC A;  2W03 A;  3N0U A;  3OYB A;  3L2U A;  4EJZ A;  1MUD A;  4UNF A;  5KN8 A;  4YOQ A;  3OYD A;  1PU7 A;  1LWV A; 
#chains in the Genus database with same CATH homology
 1YQR A;  1NKU A;  2NOF A;  1VRL A;  1LWW A;  4OFE A;  1PU6 A;  4EA5 A;  1P7M A;  3D4V A;  2XHI A;  4AI5 A;  3FHF A;  2YG9 A;  4E9G A;  2OFK A;  1MUN A;  1M3Q A;  2H56 A;  5KN9 A;  4HSB A;  4EA4 A;  1ORP A;  4YPH A;  3IHO A;  4EW0 A;  1XQO A;  1KG3 A;  4YPR A;  1KO9 A;  3IH7 A;  1LWY A;  2YG8 A;  1EBM A;  2NOE A;  3CWA A;  1YQL A;  2OFI A;  4PII A;  1WEI A;  2JHN A;  2NOZ A;  1P59 A;  1XG7 A;  3S6I A;  1M3H A;  2JG6 A;  1KEA A;  4B22 A;  1ORN A;  3FSP A;  3N5N X;  4AIA A;  4E9E A;  2NOH A;  1DIZ A;  5CHZ A;  1N3A A;  5DPK A;  1KG6 A;  2I5W A;  1KG4 A;  5AN4 A;  4B24 A;  1N3C A;  1NGN A;  4B21 A;  2NOB A;  4AI4 A;  4EJY A;  3OGD A;  2ABK A;  3CWS A;  1PU8 A;  1KG7 A;  2JHJ A;  3F10 A;  1PVS A;  1HU0 A;  3CWU A;  1YQK A;  1MUY A;  1N39 A;  2NOI A;  1KG2 A;  4DK9 A;  3CVT A;  1KG5 A;  3OH6 A;  1RRQ A;  3KNT A;  1WEF A;  4E9F A;  3OH9 A;  1MPG A;  4EVV A;  3CW7 A;  3I0W A;  1WEG A;  2NOL A;  3FHG A;  3F0Z A;  4OFA A;  1FN7 A;  4UOB A;  1LMZ A;  1XQP A;  4E9H A;  3CWT A;  3G0Q A;  4OFH A;  3KTU A;  1KQJ A;  1YQM A;  3CVS A;  4B23 A;  4EW4 A;  3I0X A;  1RRS A;  3N0U A;  4EJZ A;  1MUD A;  4UNF A;  5KN8 A;  4YOQ A;  1PU7 A;  1LWV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...