4UOBA

Crystal structure of deinococcus radiodurans endonuclease iii-3
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
242
structure length
242
Chain Sequence
SRPLSEQNPPPVWFGEYLSRLRDTYAPELPPPRQFPDPLGGLIRTILSQQNTRRVAQRQWEVLTATYPQWEAALLDGPDGIEATLKSAGGGLSRMKADYIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALVLLFDLRRPAMPVDGNMERAAKRLELVPAAWNSHKVERWYAEVMPADWETRFALHISGVRHGRDTCRSKHPLCPQCPLREFCPSASIFELGEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Functional Characterization of Two Unusual Endonuclease III Enzymes from Deinococcus Radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans
molecule tags Lyase
molecule keywords ENDONUCLEASE III-3
total genus 90
structure length 242
sequence length 242
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4uobA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 4uobA01
2NOIA 1YQLA 1N3CA 1PVSA 3N0UA 3OH9A 1KG5A 3FHGA 5KN8A 4E9HA 1YQMA 1KG7A 1KG2A 2JG6A 4UOBA 4B23A 1ORPA 1LWYA 2XHIA 1DIZA 5DPKA 1ORNA 4EVVA 2JHNA 1N39A 1HU0A 3CWUA 2OFIA 4B22A 1PU8A 3KNTA 4YPRA 1MUNA 1KEAA 4EA4A 3OGDA 1FN7A 4EA5A 3CW7A 1LWVA 1NGNA 1MUYA 1KO9A 3CVTA 2NOBA 4EJZA 3FHFA 1KG4A 1YQRA 2NOHA 4HSBA 3CWSA 3I0XA 4EW4A 2I5WA 2NOFA 4UNFA 1WEIA 4EW0A 4AI4A 3FSPA 4YPHA 3OH6A 4E9EA 1NKUA 2OFKA 4OFHA 1MUDA 1PU7A 1XG7A 4OFEA 3CWTA 4AI5A 4EJYA 4AIAA 4E9GA 4E9FA 1P7MA 3D4VA 1KG3A 1M3HA 2ABKA 3IH7A 4OFAA 3G0QA 1XQOA 3F10A 5AN4A 2YG8A 2H56A 3I0WA 1P59A 4B24A 3CWAA 1WEFA 5CHZA 1VRLA 1N3AA 1RRQA 1WEGA 1M3QA 1MPGA 3CVSA 1XQPA 3S6IA 1LMZA 1RRSA 1KQJA 5KN9A 2NOEA 1PU6A 1KG6A 4B21A 2NOLA 1LWWA 4PIIA 2NOZA 3IHOA 2YG9A 4YOQA 1EBMA 3F0ZA 1YQKA 2JHJA 3KTUA 4DK9A 3N5NX
chains in the Genus database with same CATH superfamily
2NOIA 1YQLA 3OYGA 1N3CA 4BDYA 1PVSA 3N0UA 3OH9A 1KG5A 3FHGA 1U84A 5KN8A 3OYNA 3VW4A 4E9HA 1YQMA 4BE1A 3OYIA 3S3OA 3OYCA 3OS2A 1KG7A 3R2XC 1KG2A 2JG6A 4UOBA 4B23A 1ORPA 1LWYA 2XHIA 4ZTFA 1DIZA 5DPKA 3L2WA 3OYFA 1ORNA 3OYEA 4EVVA 2JHNA 1N39A 1HU0A 3CWUA 2JPSA 3OS1A 3OYMA 4B22A 1PU8A 3KNTA 3S3NA 4BACA 4YPRA 2OFIA 1MUNA 1KEAA 3OYHA 4EA4A 3OGDA 1FN7A 4EA5A 3OYJA 3CW7A 1LWVA 1NGNA 1MUYA 1KO9A 3CVTA 5FROA 2NOBA 4EJZA 3FHFA 1KG4A 1YQRA 2NOHA 4HSBA 3CWSA 3I0XA 4EW4A 2I5WA 2V75A 2NOFA 3OS0A 3L2QA 4UNFA 1WEIA 4EW0A 5FRNA 4AI4A 3FSPA 4E7IA 4YPHA 3OH6A 4E7LA 4E7HA 4E7JA 4E9EA 3LCNA 3NNQA 1NKUA 2OFKA 4OFHA 1MUDA 3OY9A 1PU7A 1XG7A 4BE0A 3S3MA 4OFEA 3OYAA 3L2UA 3CWTA 4AI5A 4EJYA 4AIAA 4E9GA 4E9FA 1P7MA 3D4VA 1KG3A 1M3HA 2ABKA 3IH7A 2W03A 4OFAA 3G0QA 3L2VA 1XQOA 3F10A 4IKFA 5AN4A 2YG8A 2H56A 3OYLA 3I0WA 1P59A 4B24A 3CWAA 1WEFA 5CHZA 1VRLA 1N3AA 1RRQA 5FRMA 1WEGA 1M3QA 3OYDA 3L2RA 1MPGA 3CVSA 1XQPA 3S6IA 1LMZA 2W04A 1RRSA 1KQJA 5KN9A 2NOEA 1PU6A 3OYBA 1KG6A 4B21A 2NOLA 1LWWA 4PIIA 2NOZA 3IHOA 2YG9A 4YOQA 1EBMA 4NZGA 3OYKA 3F0ZA 4BDZA 4ZTJA 1YQKA 2JHJA 4BE2A 3KTUA 4E7KA 4DK9A 3N5NX
chains in the Genus database with same CATH topology
2NOIA 1YQLA 1N3CA 1PVSA 3N0UA 3OH9A 1KG5A 3FHGA 5KN8A 4E9HA 1YQMA 1KG7A 1KG2A 2JG6A 4UOBA 4B23A 1ORPA 1LWYA 2XHIA 1DIZA 5DPKA 1ORNA 4EVVA 2JHNA 1N39A 1HU0A 3CWUA 2OFIA 4B22A 1PU8A 3KNTA 4YPRA 1MUNA 1KEAA 4EA4A 3OGDA 1FN7A 4EA5A 3CW7A 1LWVA 1NGNA 1MUYA 1KO9A 3CVTA 2NOBA 4EJZA 3FHFA 1KG4A 1YQRA 2NOHA 4HSBA 3CWSA 3I0XA 4EW4A 2I5WA 2NOFA 4UNFA 1WEIA 4EW0A 4AI4A 3FSPA 4YPHA 3OH6A 4E9EA 1NKUA 2OFKA 4OFHA 1MUDA 1PU7A 1XG7A 4OFEA 3CWTA 4AI5A 4EJYA 4AIAA 4E9GA 4E9FA 1P7MA 3D4VA 1KG3A 1M3HA 2ABKA 3IH7A 4OFAA 3G0QA 1XQOA 3F10A 5AN4A 2YG8A 2H56A 3I0WA 1P59A 4B24A 3CWAA 1WEFA 5CHZA 1VRLA 1N3AA 1RRQA 1WEGA 1M3QA 1MPGA 3CVSA 1XQPA 3S6IA 1LMZA 1RRSA 1KQJA 5KN9A 2NOEA 1PU6A 1KG6A 4B21A 2NOLA 1LWWA 4PIIA 2NOZA 3IHOA 2YG9A 4YOQA 1EBMA 3F0ZA 1YQKA 2JHJA 3KTUA 4DK9A 3N5NX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NOI A;  1YQL A;  1N3C A;  1PVS A;  3N0U A;  3OH9 A;  1KG5 A;  3FHG A;  5KN8 A;  4E9H A;  1YQM A;  1KG7 A;  1KG2 A;  2JG6 A;  4UOB A;  4B23 A;  1ORP A;  1LWY A;  2XHI A;  1DIZ A;  5DPK A;  1ORN A;  4EVV A;  2JHN A;  1N39 A;  1HU0 A;  3CWU A;  2OFI A;  4B22 A;  1PU8 A;  3KNT A;  4YPR A;  1MUN A;  1KEA A;  4EA4 A;  3OGD A;  1FN7 A;  4EA5 A;  3CW7 A;  1LWV A;  1NGN A;  1MUY A;  1KO9 A;  3CVT A;  2NOB A;  4EJZ A;  3FHF A;  1KG4 A;  1YQR A;  2NOH A;  4HSB A;  3CWS A;  3I0X A;  4EW4 A;  2I5W A;  2NOF A;  4UNF A;  1WEI A;  4EW0 A;  4AI4 A;  3FSP A;  4YPH A;  3OH6 A;  4E9E A;  1NKU A;  2OFK A;  4OFH A;  1MUD A;  1PU7 A;  1XG7 A;  4OFE A;  3CWT A;  4AI5 A;  4EJY A;  4AIA A;  4E9G A;  4E9F A;  1P7M A;  3D4V A;  1KG3 A;  1M3H A;  2ABK A;  3IH7 A;  4OFA A;  3G0Q A;  1XQO A;  3F10 A;  5AN4 A;  2YG8 A;  2H56 A;  3I0W A;  1P59 A;  4B24 A;  3CWA A;  1WEF A;  5CHZ A;  1VRL A;  1N3A A;  1RRQ A;  1WEG A;  1M3Q A;  1MPG A;  3CVS A;  1XQP A;  3S6I A;  1LMZ A;  1RRS A;  1KQJ A;  5KN9 A;  2NOE A;  1PU6 A;  1KG6 A;  4B21 A;  2NOL A;  1LWW A;  4PII A;  2NOZ A;  3IHO A;  2YG9 A;  4YOQ A;  1EBM A;  3F0Z A;  1YQK A;  2JHJ A;  3KTU A;  4DK9 A;  3N5N X; 
#chains in the Genus database with same CATH topology
 2NOI A;  1YQL A;  3OYG A;  1N3C A;  4BDY A;  1PVS A;  3N0U A;  3OH9 A;  1KG5 A;  3FHG A;  1U84 A;  5KN8 A;  3OYN A;  3VW4 A;  4E9H A;  1YQM A;  4BE1 A;  3OYI A;  3S3O A;  3OYC A;  3OS2 A;  1KG7 A;  3R2X C;  1KG2 A;  2JG6 A;  4UOB A;  4B23 A;  1ORP A;  1LWY A;  2XHI A;  4ZTF A;  1DIZ A;  5DPK A;  3L2W A;  3OYF A;  1ORN A;  3OYE A;  4EVV A;  2JHN A;  1N39 A;  1HU0 A;  3CWU A;  2JPS A;  3OS1 A;  3OYM A;  4B22 A;  1PU8 A;  3KNT A;  3S3N A;  4BAC A;  4YPR A;  2OFI A;  1MUN A;  1KEA A;  3OYH A;  4EA4 A;  3OGD A;  1FN7 A;  4EA5 A;  3OYJ A;  3CW7 A;  1LWV A;  1NGN A;  1MUY A;  1KO9 A;  3CVT A;  5FRO A;  2NOB A;  4EJZ A;  3FHF A;  1KG4 A;  1YQR A;  2NOH A;  4HSB A;  3CWS A;  3I0X A;  4EW4 A;  2I5W A;  2V75 A;  2NOF A;  3OS0 A;  3L2Q A;  4UNF A;  1WEI A;  4EW0 A;  5FRN A;  4AI4 A;  3FSP A;  4E7I A;  4YPH A;  3OH6 A;  4E7L A;  4E7H A;  4E7J A;  4E9E A;  3LCN A;  3NNQ A;  1NKU A;  2OFK A;  4OFH A;  1MUD A;  3OY9 A;  1PU7 A;  1XG7 A;  4BE0 A;  3S3M A;  4OFE A;  3OYA A;  3L2U A;  3CWT A;  4AI5 A;  4EJY A;  4AIA A;  4E9G A;  4E9F A;  1P7M A;  3D4V A;  1KG3 A;  1M3H A;  2ABK A;  3IH7 A;  2W03 A;  4OFA A;  3G0Q A;  3L2V A;  1XQO A;  3F10 A;  4IKF A;  5AN4 A;  2YG8 A;  2H56 A;  3OYL A;  3I0W A;  1P59 A;  4B24 A;  3CWA A;  1WEF A;  5CHZ A;  1VRL A;  1N3A A;  1RRQ A;  5FRM A;  1WEG A;  1M3Q A;  3OYD A;  3L2R A;  1MPG A;  3CVS A;  1XQP A;  3S6I A;  1LMZ A;  2W04 A;  1RRS A;  1KQJ A;  5KN9 A;  2NOE A;  1PU6 A;  3OYB A;  1KG6 A;  4B21 A;  2NOL A;  1LWW A;  4PII A;  2NOZ A;  3IHO A;  2YG9 A;  4YOQ A;  1EBM A;  4NZG A;  3OYK A;  3F0Z A;  4BDZ A;  4ZTJ A;  1YQK A;  2JHJ A;  4BE2 A;  3KTU A;  4E7K A;  4DK9 A;  3N5N X; 
#chains in the Genus database with same CATH homology
 2NOI A;  1YQL A;  1N3C A;  1PVS A;  3N0U A;  3OH9 A;  1KG5 A;  3FHG A;  5KN8 A;  4E9H A;  1YQM A;  1KG7 A;  1KG2 A;  2JG6 A;  4UOB A;  4B23 A;  1ORP A;  1LWY A;  2XHI A;  1DIZ A;  5DPK A;  1ORN A;  4EVV A;  2JHN A;  1N39 A;  1HU0 A;  3CWU A;  2OFI A;  4B22 A;  1PU8 A;  3KNT A;  4YPR A;  1MUN A;  1KEA A;  4EA4 A;  3OGD A;  1FN7 A;  4EA5 A;  3CW7 A;  1LWV A;  1NGN A;  1MUY A;  1KO9 A;  3CVT A;  2NOB A;  4EJZ A;  3FHF A;  1KG4 A;  1YQR A;  2NOH A;  4HSB A;  3CWS A;  3I0X A;  4EW4 A;  2I5W A;  2NOF A;  4UNF A;  1WEI A;  4EW0 A;  4AI4 A;  3FSP A;  4YPH A;  3OH6 A;  4E9E A;  1NKU A;  2OFK A;  4OFH A;  1MUD A;  1PU7 A;  1XG7 A;  4OFE A;  3CWT A;  4AI5 A;  4EJY A;  4AIA A;  4E9G A;  4E9F A;  1P7M A;  3D4V A;  1KG3 A;  1M3H A;  2ABK A;  3IH7 A;  4OFA A;  3G0Q A;  1XQO A;  3F10 A;  5AN4 A;  2YG8 A;  2H56 A;  3I0W A;  1P59 A;  4B24 A;  3CWA A;  1WEF A;  5CHZ A;  1VRL A;  1N3A A;  1RRQ A;  1WEG A;  1M3Q A;  1MPG A;  3CVS A;  1XQP A;  3S6I A;  1LMZ A;  1RRS A;  1KQJ A;  5KN9 A;  2NOE A;  1PU6 A;  1KG6 A;  4B21 A;  2NOL A;  1LWW A;  4PII A;  2NOZ A;  3IHO A;  2YG9 A;  4YOQ A;  1EBM A;  3F0Z A;  1YQK A;  2JHJ A;  3KTU A;  4DK9 A;  3N5N X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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