4UOBA

Crystal structure of deinococcus radiodurans endonuclease iii-3
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
242
structure length
242
Chain Sequence
SRPLSEQNPPPVWFGEYLSRLRDTYAPELPPPRQFPDPLGGLIRTILSQQNTRRVAQRQWEVLTATYPQWEAALLDGPDGIEATLKSAGGGLSRMKADYIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALVLLFDLRRPAMPVDGNMERAAKRLELVPAAWNSHKVERWYAEVMPADWETRFALHISGVRHGRDTCRSKHPLCPQCPLREFCPSASIFELGEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ENDONUCLEASE III-3
publication title Structural and Functional Characterization of Two Unusual Endonuclease III Enzymes from Deinococcus Radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans
molecule tags Lyase
total genus 90
structure length 242
sequence length 242
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4uobA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 4uobA01
1PU8A 4AI4A 1MPGA 3CWAA 2JG6A 4PIIA 2NOBA 1LWYA 2NOEA 1M3QA 1N3AA 1KO9A 3FHFA 5KN8A 3I0XA 2I5WA 2NOLA 2JHNA 2OFIA 2NOFA 1EBMA 3CVSA 1RRSA 3FHGA 3CWSA 1PU7A 1WEFA 1NGNA 4E9HA 1RRQA 3IHOA 1FN7A 2NOHA 2NOZA 1P7MA 4EA4A 3CVTA 1YQLA 2NOIA 1YQRA 4B22A 4OFEA 5CHZA 4E9FA 1KG6A 4EJYA 3I0WA 1PU6A 3F10A 4B24A 1N39A 2ABKA 1NKUA 2H56A 1WEIA 1P59A 4EW0A 4B21A 1DIZA 5DPKA 1ORNA 3CW7A 1PVSA 4DK9A 1MUYA 3OH9A 4EW4A 4UNFA 1KG3A 1MUNA 1N3CA 1KG4A 3FSPA 3KNTA 1LMZA 1XQOA 5KN9A 4HSBA 2JHJA 4AIAA 1LWWA 4YPRA 1XG7A 3OH6A 1XQPA 3OGDA 3N5NX 3KTUA 1YQKA 1KEAA 3IH7A 4OFHA 1KG5A 3G0QA 1KG7A 2YG8A 4E9EA 2OFKA 1KQJA 4EA5A 2XHIA 3N0UA 2YG9A 4E9GA 4OFAA 4UOBA 5AN4A 1M3HA 4EVVA 1KG2A 4YOQA 1YQMA 1MUDA 3F0ZA 4AI5A 3CWUA 1VRLA 4B23A 4EJZA 1HU0A 1LWVA 1WEGA 3S6IA 1ORPA 4YPHA 3CWTA 3D4VA
chains in the Genus database with same CATH superfamily
3OY9A 3OYFA 3OYAA 1PU8A 3L2WA 4AI4A 1MPGA 4ZTFA 5FROA 3CWAA 2JG6A 4PIIA 2NOBA 1LWYA 2NOEA 2V75A 1M3QA 4NZGA 1N3AA 5FRNA 1KO9A 3FHFA 5KN8A 3I0XA 2I5WA 2NOLA 2JHNA 2OFIA 2NOFA 1EBMA 3CVSA 1RRSA 4BE2A 3FHGA 4ZTJA 3CWSA 1PU7A 1WEFA 1NGNA 4E9HA 1RRQA 3IHOA 4BE1A 1FN7A 3OYKA 2NOHA 2NOZA 1P7MA 3VW4A 4EA4A 3CVTA 3OYMA 1YQLA 2NOIA 1YQRA 4B22A 3R2XC 4BDZA 4OFEA 5CHZA 3L2RA 4E9FA 1KG6A 4EJYA 4BE0A 5FRMA 3I0WA 1PU6A 3F10A 4B24A 1N39A 1U84A 2ABKA 1NKUA 3OS1A 2H56A 1WEIA 3L2QA 1P59A 4EW0A 4B21A 4E7LA 1DIZA 5DPKA 1ORNA 3CW7A 1PVSA 4DK9A 1MUYA 3OYEA 2W04A 3OH9A 4EW4A 4E7IA 4UNFA 3OYLA 1KG3A 3OYJA 1MUNA 1N3CA 1KG4A 3L2UA 3FSPA 3KNTA 2JPSA 3S3NA 1LMZA 1XQOA 5KN9A 4HSBA 2JHJA 3OYBA 4AIAA 1LWWA 4YPRA 1XG7A 3OH6A 3OYDA 3OYNA 1XQPA 3OYCA 3N5NX 3OGDA 2W03A 4BACA 3KTUA 3OS0A 1YQKA 1KEAA 3IH7A 4BDYA 4OFHA 1KG5A 3G0QA 1KG7A 4IKFA 2YG8A 4E9EA 3L2VA 2OFKA 3LCNA 1KQJA 3OYHA 4EA5A 2XHIA 3OYIA 3N0UA 2YG9A 3NNQA 4OFAA 4E9GA 4E7KA 3S3OA 4UOBA 5AN4A 3OS2A 1M3HA 4EVVA 1KG2A 4YOQA 4E7HA 1YQMA 1MUDA 3F0ZA 4AI5A 3CWUA 1VRLA 3S3MA 4B23A 4EJZA 1HU0A 1LWVA 1WEGA 4E7JA 3S6IA 1ORPA 4YPHA 3CWTA 3OYGA 3D4VA
chains in the Genus database with same CATH topology
1PU8A 4AI4A 1MPGA 3CWAA 2JG6A 4PIIA 2NOBA 1LWYA 2NOEA 1M3QA 1N3AA 1KO9A 3FHFA 5KN8A 3I0XA 2I5WA 2NOLA 2JHNA 2OFIA 2NOFA 1EBMA 3CVSA 1RRSA 3FHGA 3CWSA 1PU7A 1WEFA 1NGNA 4E9HA 1RRQA 3IHOA 1FN7A 2NOHA 2NOZA 1P7MA 4EA4A 3CVTA 1YQLA 2NOIA 1YQRA 4B22A 4OFEA 5CHZA 4E9FA 1KG6A 4EJYA 3I0WA 1PU6A 3F10A 4B24A 1N39A 2ABKA 1NKUA 2H56A 1WEIA 1P59A 4EW0A 4B21A 1DIZA 5DPKA 1ORNA 3CW7A 1PVSA 4DK9A 1MUYA 3OH9A 4EW4A 4UNFA 1KG3A 1MUNA 1N3CA 1KG4A 3FSPA 3KNTA 1LMZA 1XQOA 5KN9A 4HSBA 2JHJA 4AIAA 1LWWA 4YPRA 1XG7A 3OH6A 1XQPA 3OGDA 3N5NX 3KTUA 1YQKA 1KEAA 3IH7A 4OFHA 1KG5A 3G0QA 1KG7A 2YG8A 4E9EA 2OFKA 1KQJA 4EA5A 2XHIA 3N0UA 2YG9A 4E9GA 4OFAA 4UOBA 5AN4A 1M3HA 4EVVA 1KG2A 4YOQA 1YQMA 1MUDA 3F0ZA 4AI5A 3CWUA 1VRLA 4B23A 4EJZA 1HU0A 1LWVA 1WEGA 3S6IA 1ORPA 4YPHA 3CWTA 3D4VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PU8 A;  4AI4 A;  1MPG A;  3CWA A;  2JG6 A;  4PII A;  2NOB A;  1LWY A;  2NOE A;  1M3Q A;  1N3A A;  1KO9 A;  3FHF A;  5KN8 A;  3I0X A;  2I5W A;  2NOL A;  2JHN A;  2OFI A;  2NOF A;  1EBM A;  3CVS A;  1RRS A;  3FHG A;  3CWS A;  1PU7 A;  1WEF A;  1NGN A;  4E9H A;  1RRQ A;  3IHO A;  1FN7 A;  2NOH A;  2NOZ A;  1P7M A;  4EA4 A;  3CVT A;  1YQL A;  2NOI A;  1YQR A;  4B22 A;  4OFE A;  5CHZ A;  4E9F A;  1KG6 A;  4EJY A;  3I0W A;  1PU6 A;  3F10 A;  4B24 A;  1N39 A;  2ABK A;  1NKU A;  2H56 A;  1WEI A;  1P59 A;  4EW0 A;  4B21 A;  1DIZ A;  5DPK A;  1ORN A;  3CW7 A;  1PVS A;  4DK9 A;  1MUY A;  3OH9 A;  4EW4 A;  4UNF A;  1KG3 A;  1MUN A;  1N3C A;  1KG4 A;  3FSP A;  3KNT A;  1LMZ A;  1XQO A;  5KN9 A;  4HSB A;  2JHJ A;  4AIA A;  1LWW A;  4YPR A;  1XG7 A;  3OH6 A;  1XQP A;  3OGD A;  3N5N X;  3KTU A;  1YQK A;  1KEA A;  3IH7 A;  4OFH A;  1KG5 A;  3G0Q A;  1KG7 A;  2YG8 A;  4E9E A;  2OFK A;  1KQJ A;  4EA5 A;  2XHI A;  3N0U A;  2YG9 A;  4E9G A;  4OFA A;  4UOB A;  5AN4 A;  1M3H A;  4EVV A;  1KG2 A;  4YOQ A;  1YQM A;  1MUD A;  3F0Z A;  4AI5 A;  3CWU A;  1VRL A;  4B23 A;  4EJZ A;  1HU0 A;  1LWV A;  1WEG A;  3S6I A;  1ORP A;  4YPH A;  3CWT A;  3D4V A; 
#chains in the Genus database with same CATH topology
 3OY9 A;  3OYF A;  3OYA A;  1PU8 A;  3L2W A;  4AI4 A;  1MPG A;  4ZTF A;  5FRO A;  3CWA A;  2JG6 A;  4PII A;  2NOB A;  1LWY A;  2NOE A;  2V75 A;  1M3Q A;  4NZG A;  1N3A A;  5FRN A;  1KO9 A;  3FHF A;  5KN8 A;  3I0X A;  2I5W A;  2NOL A;  2JHN A;  2OFI A;  2NOF A;  1EBM A;  3CVS A;  1RRS A;  4BE2 A;  3FHG A;  4ZTJ A;  3CWS A;  1PU7 A;  1WEF A;  1NGN A;  4E9H A;  1RRQ A;  3IHO A;  4BE1 A;  1FN7 A;  3OYK A;  2NOH A;  2NOZ A;  1P7M A;  3VW4 A;  4EA4 A;  3CVT A;  3OYM A;  1YQL A;  2NOI A;  1YQR A;  4B22 A;  3R2X C;  4BDZ A;  4OFE A;  5CHZ A;  3L2R A;  4E9F A;  1KG6 A;  4EJY A;  4BE0 A;  5FRM A;  3I0W A;  1PU6 A;  3F10 A;  4B24 A;  1N39 A;  1U84 A;  2ABK A;  1NKU A;  3OS1 A;  2H56 A;  1WEI A;  3L2Q A;  1P59 A;  4EW0 A;  4B21 A;  4E7L A;  1DIZ A;  5DPK A;  1ORN A;  3CW7 A;  1PVS A;  4DK9 A;  1MUY A;  3OYE A;  2W04 A;  3OH9 A;  4EW4 A;  4E7I A;  4UNF A;  3OYL A;  1KG3 A;  3OYJ A;  1MUN A;  1N3C A;  1KG4 A;  3L2U A;  3FSP A;  3KNT A;  2JPS A;  3S3N A;  1LMZ A;  1XQO A;  5KN9 A;  4HSB A;  2JHJ A;  3OYB A;  4AIA A;  1LWW A;  4YPR A;  1XG7 A;  3OH6 A;  3OYD A;  3OYN A;  1XQP A;  3OYC A;  3N5N X;  3OGD A;  2W03 A;  4BAC A;  3KTU A;  3OS0 A;  1YQK A;  1KEA A;  3IH7 A;  4BDY A;  4OFH A;  1KG5 A;  3G0Q A;  1KG7 A;  4IKF A;  2YG8 A;  4E9E A;  3L2V A;  2OFK A;  3LCN A;  1KQJ A;  3OYH A;  4EA5 A;  2XHI A;  3OYI A;  3N0U A;  2YG9 A;  3NNQ A;  4OFA A;  4E9G A;  4E7K A;  3S3O A;  4UOB A;  5AN4 A;  3OS2 A;  1M3H A;  4EVV A;  1KG2 A;  4YOQ A;  4E7H A;  1YQM A;  1MUD A;  3F0Z A;  4AI5 A;  3CWU A;  1VRL A;  3S3M A;  4B23 A;  4EJZ A;  1HU0 A;  1LWV A;  1WEG A;  4E7J A;  3S6I A;  1ORP A;  4YPH A;  3CWT A;  3OYG A;  3D4V A; 
#chains in the Genus database with same CATH homology
 1PU8 A;  4AI4 A;  1MPG A;  3CWA A;  2JG6 A;  4PII A;  2NOB A;  1LWY A;  2NOE A;  1M3Q A;  1N3A A;  1KO9 A;  3FHF A;  5KN8 A;  3I0X A;  2I5W A;  2NOL A;  2JHN A;  2OFI A;  2NOF A;  1EBM A;  3CVS A;  1RRS A;  3FHG A;  3CWS A;  1PU7 A;  1WEF A;  1NGN A;  4E9H A;  1RRQ A;  3IHO A;  1FN7 A;  2NOH A;  2NOZ A;  1P7M A;  4EA4 A;  3CVT A;  1YQL A;  2NOI A;  1YQR A;  4B22 A;  4OFE A;  5CHZ A;  4E9F A;  1KG6 A;  4EJY A;  3I0W A;  1PU6 A;  3F10 A;  4B24 A;  1N39 A;  2ABK A;  1NKU A;  2H56 A;  1WEI A;  1P59 A;  4EW0 A;  4B21 A;  1DIZ A;  5DPK A;  1ORN A;  3CW7 A;  1PVS A;  4DK9 A;  1MUY A;  3OH9 A;  4EW4 A;  4UNF A;  1KG3 A;  1MUN A;  1N3C A;  1KG4 A;  3FSP A;  3KNT A;  1LMZ A;  1XQO A;  5KN9 A;  4HSB A;  2JHJ A;  4AIA A;  1LWW A;  4YPR A;  1XG7 A;  3OH6 A;  1XQP A;  3OGD A;  3N5N X;  3KTU A;  1YQK A;  1KEA A;  3IH7 A;  4OFH A;  1KG5 A;  3G0Q A;  1KG7 A;  2YG8 A;  4E9E A;  2OFK A;  1KQJ A;  4EA5 A;  2XHI A;  3N0U A;  2YG9 A;  4E9G A;  4OFA A;  4UOB A;  5AN4 A;  1M3H A;  4EVV A;  1KG2 A;  4YOQ A;  1YQM A;  1MUD A;  3F0Z A;  4AI5 A;  3CWU A;  1VRL A;  4B23 A;  4EJZ A;  1HU0 A;  1LWV A;  1WEG A;  3S6I A;  1ORP A;  4YPH A;  3CWT A;  3D4V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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