4UOBA

Crystal structure of deinococcus radiodurans endonuclease iii-3
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
242
structure length
242
Chain Sequence
SRPLSEQNPPPVWFGEYLSRLRDTYAPELPPPRQFPDPLGGLIRTILSQQNTRRVAQRQWEVLTATYPQWEAALLDGPDGIEATLKSAGGGLSRMKADYIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALVLLFDLRRPAMPVDGNMERAAKRLELVPAAWNSHKVERWYAEVMPADWETRFALHISGVRHGRDTCRSKHPLCPQCPLREFCPSASIFELGEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ENDONUCLEASE III-3
publication title Structural and Functional Characterization of Two Unusual Endonuclease III Enzymes from Deinococcus Radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans
molecule tags Lyase
total genus 90
structure length 242
sequence length 242
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4uobA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 4uobA01
1LWWA 1LWYA 1HU0A 1LMZA 3F0ZA 2NOEA 4UNFA 1VRLA 5KN8A 5CHZA 3CVSA 1RRQA 3KTUA 1YQRA 1MUDA 1PVSA 3CWTA 3I0XA 1N3CA 2OFKA 2NOLA 4EJYA 3FHGA 1WEGA 4OFHA 1XQPA 4YPHA 2ABKA 3G0QA 4AIAA 1NKUA 4EA4A 1PU7A 4OFAA 1YQLA 3CW7A 2YG8A 3OH6A 3KNTA 1MUNA 1KQJA 1KG4A 1RRSA 1XG7A 3OH9A 2NOZA 1KG7A 2YG9A 1ORPA 4EA5A 1YQKA 4DK9A 3CWSA 3IH7A 1DIZA 3CVTA 4HSBA 2NOBA 4AI5A 4PIIA 1EBMA 5AN4A 1WEIA 2JHJA 1LWVA 3S6IA 3FHFA 2I5WA 2JHNA 3OGDA 4B24A 1M3QA 1M3HA 1XQOA 4B23A 2XHIA 1YQMA 4YPRA 3FSPA 1NGNA 1KG6A 3IHOA 3D4VA 4E9HA 1N3AA 2JG6A 1WEFA 2NOFA 1N39A 1ORNA 3I0WA 3CWUA 5KN9A 3N0UA 4E9FA 4E9EA 1P7MA 4AI4A 4B21A 5DPKA 2OFIA 1PU8A 1KG2A 4B22A 1MPGA 4EJZA 4EW4A 3CWAA 1KO9A 4OFEA 2H56A 4UOBA 3F10A 1PU6A 4EW0A 1FN7A 4E9GA 2NOIA 2NOHA 1MUYA 1KG5A 1KEAA 4YOQA 1KG3A 4EVVA 1P59A 3N5NX
chains in the Genus database with same CATH superfamily
1LWWA 1LWYA 1HU0A 1LMZA 3F0ZA 2NOEA 4UNFA 3L2QA 5FROA 1VRLA 5KN8A 5CHZA 3OYLA 3L2VA 3CVSA 4E7HA 3OS2A 1RRQA 3OYGA 3KTUA 3S3NA 1YQRA 4E7LA 1MUDA 3OYEA 1PVSA 3CWTA 3I0XA 3L2UA 1N3CA 3OYIA 2OFKA 4E7IA 2NOLA 4EJYA 3OS1A 3FHGA 1WEGA 4OFHA 1XQPA 4YPHA 2ABKA 3G0QA 4AIAA 1NKUA 4EA4A 1PU7A 1U84A 3S3MA 4OFAA 1YQLA 3CW7A 2YG8A 3OH6A 3KNTA 4BDYA 3OYHA 1MUNA 1KQJA 1KG4A 1RRSA 1XG7A 4E7KA 4ZTFA 3OH9A 2NOZA 1KG7A 3R2XC 2W03A 3OY9A 2YG9A 1ORPA 4EA5A 4E7JA 1YQKA 4DK9A 3CWSA 4NZGA 4ZTJA 3IH7A 1DIZA 4BE0A 3CVTA 4HSBA 2NOBA 4AI5A 4PIIA 1EBMA 3OYFA 2V75A 5FRNA 5AN4A 1WEIA 2JHJA 4BE1A 1LWVA 3OYCA 3S6IA 3FHFA 2I5WA 2JHNA 3OGDA 4B24A 3OYJA 1M3HA 1M3QA 1XQOA 4B23A 4IKFA 3NNQA 2XHIA 3S3OA 1YQMA 3VW4A 4YPRA 2W04A 3FSPA 1NGNA 1KG6A 3IHOA 3D4VA 4E9HA 1N3AA 2JG6A 1WEFA 2NOFA 3L2WA 1N39A 1ORNA 3I0WA 3CWUA 5KN9A 3N0UA 4E9FA 4E9EA 1P7MA 3OYKA 4AI4A 4B21A 5DPKA 2OFIA 1PU8A 1KG2A 4B22A 1MPGA 3OYMA 4EJZA 4EW4A 3CWAA 1KO9A 4BACA 3OYNA 2JPSA 2H56A 4OFEA 3OYDA 4UOBA 4BDZA 3F10A 1PU6A 3OS0A 3OYBA 4EW0A 1FN7A 4E9GA 2NOIA 2NOHA 1MUYA 5FRMA 1KG5A 1KEAA 4YOQA 1KG3A 4BE2A 3OYAA 3L2RA 4EVVA 3LCNA 1P59A 3N5NX
chains in the Genus database with same CATH topology
1LWWA 1LWYA 1HU0A 1LMZA 3F0ZA 2NOEA 4UNFA 1VRLA 5KN8A 5CHZA 3CVSA 1RRQA 3KTUA 1YQRA 1MUDA 1PVSA 3CWTA 3I0XA 1N3CA 2OFKA 2NOLA 4EJYA 3FHGA 1WEGA 4OFHA 1XQPA 4YPHA 2ABKA 3G0QA 4AIAA 1NKUA 4EA4A 1PU7A 4OFAA 1YQLA 3CW7A 2YG8A 3OH6A 3KNTA 1MUNA 1KQJA 1KG4A 1RRSA 1XG7A 3OH9A 2NOZA 1KG7A 2YG9A 1ORPA 4EA5A 1YQKA 4DK9A 3CWSA 3IH7A 1DIZA 3CVTA 4HSBA 2NOBA 4AI5A 4PIIA 1EBMA 5AN4A 1WEIA 2JHJA 1LWVA 3S6IA 3FHFA 2I5WA 2JHNA 3OGDA 4B24A 1M3QA 1M3HA 1XQOA 4B23A 2XHIA 1YQMA 4YPRA 3FSPA 1NGNA 1KG6A 3IHOA 3D4VA 4E9HA 1N3AA 2JG6A 1WEFA 2NOFA 1N39A 1ORNA 3I0WA 3CWUA 5KN9A 3N0UA 4E9FA 4E9EA 1P7MA 4AI4A 4B21A 5DPKA 2OFIA 1PU8A 1KG2A 4B22A 1MPGA 4EJZA 4EW4A 3CWAA 1KO9A 4OFEA 2H56A 4UOBA 3F10A 1PU6A 4EW0A 1FN7A 4E9GA 2NOIA 2NOHA 1MUYA 1KG5A 1KEAA 4YOQA 1KG3A 4EVVA 1P59A 3N5NX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LWW A;  1LWY A;  1HU0 A;  1LMZ A;  3F0Z A;  2NOE A;  4UNF A;  1VRL A;  5KN8 A;  5CHZ A;  3CVS A;  1RRQ A;  3KTU A;  1YQR A;  1MUD A;  1PVS A;  3CWT A;  3I0X A;  1N3C A;  2OFK A;  2NOL A;  4EJY A;  3FHG A;  1WEG A;  4OFH A;  1XQP A;  4YPH A;  2ABK A;  3G0Q A;  4AIA A;  1NKU A;  4EA4 A;  1PU7 A;  4OFA A;  1YQL A;  3CW7 A;  2YG8 A;  3OH6 A;  3KNT A;  1MUN A;  1KQJ A;  1KG4 A;  1RRS A;  1XG7 A;  3OH9 A;  2NOZ A;  1KG7 A;  2YG9 A;  1ORP A;  4EA5 A;  1YQK A;  4DK9 A;  3CWS A;  3IH7 A;  1DIZ A;  3CVT A;  4HSB A;  2NOB A;  4AI5 A;  4PII A;  1EBM A;  5AN4 A;  1WEI A;  2JHJ A;  1LWV A;  3S6I A;  3FHF A;  2I5W A;  2JHN A;  3OGD A;  4B24 A;  1M3Q A;  1M3H A;  1XQO A;  4B23 A;  2XHI A;  1YQM A;  4YPR A;  3FSP A;  1NGN A;  1KG6 A;  3IHO A;  3D4V A;  4E9H A;  1N3A A;  2JG6 A;  1WEF A;  2NOF A;  1N39 A;  1ORN A;  3I0W A;  3CWU A;  5KN9 A;  3N0U A;  4E9F A;  4E9E A;  1P7M A;  4AI4 A;  4B21 A;  5DPK A;  2OFI A;  1PU8 A;  1KG2 A;  4B22 A;  1MPG A;  4EJZ A;  4EW4 A;  3CWA A;  1KO9 A;  4OFE A;  2H56 A;  4UOB A;  3F10 A;  1PU6 A;  4EW0 A;  1FN7 A;  4E9G A;  2NOI A;  2NOH A;  1MUY A;  1KG5 A;  1KEA A;  4YOQ A;  1KG3 A;  4EVV A;  1P59 A;  3N5N X; 
#chains in the Genus database with same CATH topology
 1LWW A;  1LWY A;  1HU0 A;  1LMZ A;  3F0Z A;  2NOE A;  4UNF A;  3L2Q A;  5FRO A;  1VRL A;  5KN8 A;  5CHZ A;  3OYL A;  3L2V A;  3CVS A;  4E7H A;  3OS2 A;  1RRQ A;  3OYG A;  3KTU A;  3S3N A;  1YQR A;  4E7L A;  1MUD A;  3OYE A;  1PVS A;  3CWT A;  3I0X A;  3L2U A;  1N3C A;  3OYI A;  2OFK A;  4E7I A;  2NOL A;  4EJY A;  3OS1 A;  3FHG A;  1WEG A;  4OFH A;  1XQP A;  4YPH A;  2ABK A;  3G0Q A;  4AIA A;  1NKU A;  4EA4 A;  1PU7 A;  1U84 A;  3S3M A;  4OFA A;  1YQL A;  3CW7 A;  2YG8 A;  3OH6 A;  3KNT A;  4BDY A;  3OYH A;  1MUN A;  1KQJ A;  1KG4 A;  1RRS A;  1XG7 A;  4E7K A;  4ZTF A;  3OH9 A;  2NOZ A;  1KG7 A;  3R2X C;  2W03 A;  3OY9 A;  2YG9 A;  1ORP A;  4EA5 A;  4E7J A;  1YQK A;  4DK9 A;  3CWS A;  4NZG A;  4ZTJ A;  3IH7 A;  1DIZ A;  4BE0 A;  3CVT A;  4HSB A;  2NOB A;  4AI5 A;  4PII A;  1EBM A;  3OYF A;  2V75 A;  5FRN A;  5AN4 A;  1WEI A;  2JHJ A;  4BE1 A;  1LWV A;  3OYC A;  3S6I A;  3FHF A;  2I5W A;  2JHN A;  3OGD A;  4B24 A;  3OYJ A;  1M3H A;  1M3Q A;  1XQO A;  4B23 A;  4IKF A;  3NNQ A;  2XHI A;  3S3O A;  1YQM A;  3VW4 A;  4YPR A;  2W04 A;  3FSP A;  1NGN A;  1KG6 A;  3IHO A;  3D4V A;  4E9H A;  1N3A A;  2JG6 A;  1WEF A;  2NOF A;  3L2W A;  1N39 A;  1ORN A;  3I0W A;  3CWU A;  5KN9 A;  3N0U A;  4E9F A;  4E9E A;  1P7M A;  3OYK A;  4AI4 A;  4B21 A;  5DPK A;  2OFI A;  1PU8 A;  1KG2 A;  4B22 A;  1MPG A;  3OYM A;  4EJZ A;  4EW4 A;  3CWA A;  1KO9 A;  4BAC A;  3OYN A;  2JPS A;  2H56 A;  4OFE A;  3OYD A;  4UOB A;  4BDZ A;  3F10 A;  1PU6 A;  3OS0 A;  3OYB A;  4EW0 A;  1FN7 A;  4E9G A;  2NOI A;  2NOH A;  1MUY A;  5FRM A;  1KG5 A;  1KEA A;  4YOQ A;  1KG3 A;  4BE2 A;  3OYA A;  3L2R A;  4EVV A;  3LCN A;  1P59 A;  3N5N X; 
#chains in the Genus database with same CATH homology
 1LWW A;  1LWY A;  1HU0 A;  1LMZ A;  3F0Z A;  2NOE A;  4UNF A;  1VRL A;  5KN8 A;  5CHZ A;  3CVS A;  1RRQ A;  3KTU A;  1YQR A;  1MUD A;  1PVS A;  3CWT A;  3I0X A;  1N3C A;  2OFK A;  2NOL A;  4EJY A;  3FHG A;  1WEG A;  4OFH A;  1XQP A;  4YPH A;  2ABK A;  3G0Q A;  4AIA A;  1NKU A;  4EA4 A;  1PU7 A;  4OFA A;  1YQL A;  3CW7 A;  2YG8 A;  3OH6 A;  3KNT A;  1MUN A;  1KQJ A;  1KG4 A;  1RRS A;  1XG7 A;  3OH9 A;  2NOZ A;  1KG7 A;  2YG9 A;  1ORP A;  4EA5 A;  1YQK A;  4DK9 A;  3CWS A;  3IH7 A;  1DIZ A;  3CVT A;  4HSB A;  2NOB A;  4AI5 A;  4PII A;  1EBM A;  5AN4 A;  1WEI A;  2JHJ A;  1LWV A;  3S6I A;  3FHF A;  2I5W A;  2JHN A;  3OGD A;  4B24 A;  1M3Q A;  1M3H A;  1XQO A;  4B23 A;  2XHI A;  1YQM A;  4YPR A;  3FSP A;  1NGN A;  1KG6 A;  3IHO A;  3D4V A;  4E9H A;  1N3A A;  2JG6 A;  1WEF A;  2NOF A;  1N39 A;  1ORN A;  3I0W A;  3CWU A;  5KN9 A;  3N0U A;  4E9F A;  4E9E A;  1P7M A;  4AI4 A;  4B21 A;  5DPK A;  2OFI A;  1PU8 A;  1KG2 A;  4B22 A;  1MPG A;  4EJZ A;  4EW4 A;  3CWA A;  1KO9 A;  4OFE A;  2H56 A;  4UOB A;  3F10 A;  1PU6 A;  4EW0 A;  1FN7 A;  4E9G A;  2NOI A;  2NOH A;  1MUY A;  1KG5 A;  1KEA A;  4YOQ A;  1KG3 A;  4EVV A;  1P59 A;  3N5N X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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