4UOBA

Crystal structure of deinococcus radiodurans endonuclease iii-3
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
242
structure length
242
Chain Sequence
SRPLSEQNPPPVWFGEYLSRLRDTYAPELPPPRQFPDPLGGLIRTILSQQNTRRVAQRQWEVLTATYPQWEAALLDGPDGIEATLKSAGGGLSRMKADYIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALVLLFDLRRPAMPVDGNMERAAKRLELVPAAWNSHKVERWYAEVMPADWETRFALHISGVRHGRDTCRSKHPLCPQCPLREFCPSASIFELGEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords ENDONUCLEASE III-3
publication title Structural and Functional Characterization of Two Unusual Endonuclease III Enzymes from Deinococcus Radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 90
structure length 242
sequence length 242
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4uobA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 4uobA01
2OFKA 2OFIA 1ORNA 3IH7A 1LWVA 5KN8A 4B23A 1FN7A 4OFAA 3CWUA 1KEAA 1XQPA 3CVTA 2NOBA 2JG6A 1KG7A 3FHGA 4OFEA 1EBMA 1KG4A 3OH6A 4E9HA 1RRQA 3IHOA 5AN4A 4UOBA 2ABKA 2JHJA 4PIIA 1P59A 2YG8A 1NGNA 1PU7A 3N5NX 3CWAA 2H56A 4B21A 1P7MA 4EA5A 5CHZA 2I5WA 3KNTA 1PU8A 1LWWA 2JHNA 3I0XA 3CW7A 3OGDA 4EVVA 2NOLA 1PU6A 1KG5A 1KG3A 1NKUA 4EW4A 4EA4A 1LWYA 1MUDA 4OFHA 4YOQA 2NOEA 4E9FA 4DK9A 1KQJA 2NOIA 4EJZA 2NOFA 4B22A 3FHFA 4B24A 1N39A 1N3CA 4YPHA 1WEIA 1MUNA 3D4VA 1N3AA 1XG7A 1HU0A 3CWTA 1XQOA 4UNFA 1YQMA 3F0ZA 1VRLA 3CVSA 2XHIA 4E9EA 1RRSA 4E9GA 1KO9A 1LMZA 5DPKA 3CWSA 2YG9A 4AI4A 1ORPA 1KG2A 3OH9A 1PVSA 4AI5A 3N0UA 4EJYA 2NOZA 1MUYA 3S6IA 1WEFA 1YQKA 1WEGA 2NOHA 3FSPA 4HSBA 1DIZA 4AIAA 1M3QA 3I0WA 3F10A 1KG6A 5KN9A 1YQLA 3G0QA 4EW0A 1MPGA 4YPRA 1M3HA 3KTUA 1YQRA
chains in the Genus database with same CATH superfamily
2OFKA 2OFIA 1ORNA 3NNQA 4E7IA 2W03A 4BE0A 3S3MA 5FRMA 3IH7A 1LWVA 5KN8A 4B23A 1FN7A 4OFAA 3OYEA 3CWUA 1KEAA 1XQPA 3OS0A 3CVTA 2NOBA 5FRNA 2JG6A 1KG7A 4E7LA 3FHGA 4OFEA 4BDZA 3OYIA 1EBMA 1KG4A 1U84A 3OH6A 4E9HA 1RRQA 3IHOA 3OYKA 3L2VA 5AN4A 4UOBA 2ABKA 2JHJA 5FROA 4PIIA 3L2UA 1P59A 2YG8A 1NGNA 1PU7A 3N5NX 3CWAA 2H56A 3OS2A 4B21A 1P7MA 4EA5A 5CHZA 2I5WA 3KNTA 1PU8A 3L2RA 1LWWA 2JHNA 3I0XA 3CW7A 3OGDA 4EVVA 2NOLA 3OYBA 1PU6A 1KG5A 4BACA 1KG3A 1NKUA 4EW4A 4EA4A 3S3NA 1LWYA 3OYLA 3OYHA 1MUDA 4OFHA 4YOQA 2NOEA 4BE2A 4E9FA 4DK9A 3OY9A 1KQJA 2NOIA 4EJZA 2NOFA 4B22A 3FHFA 3OYMA 4B24A 1N39A 1N3CA 4YPHA 1WEIA 3OYCA 4ZTFA 1MUNA 3OS1A 3D4VA 1N3AA 3S3OA 3OYNA 1XG7A 1HU0A 3CWTA 1XQOA 4UNFA 1YQMA 3F0ZA 1VRLA 3CVSA 2V75A 2XHIA 3OYAA 4E7JA 3OYGA 4E9EA 1RRSA 4E9GA 3OYJA 1KO9A 1LMZA 5DPKA 4E7HA 3OYDA 3CWSA 2W04A 2YG9A 3OYFA 4AI4A 1ORPA 1KG2A 3OH9A 1PVSA 4AI5A 4E7KA 3VW4A 4IKFA 3N0UA 4EJYA 3LCNA 4BDYA 2NOZA 1MUYA 3S6IA 1WEFA 3L2QA 1YQKA 1WEGA 2NOHA 4BE1A 3FSPA 4HSBA 4NZGA 1DIZA 3R2XC 4AIAA 1M3QA 3I0WA 2JPSA 4ZTJA 3F10A 1KG6A 5KN9A 1YQLA 3G0QA 4EW0A 1MPGA 4YPRA 3L2WA 1M3HA 3KTUA 1YQRA
chains in the Genus database with same CATH topology
2OFKA 2OFIA 1ORNA 3IH7A 1LWVA 5KN8A 4B23A 1FN7A 4OFAA 3CWUA 1KEAA 1XQPA 3CVTA 2NOBA 2JG6A 1KG7A 3FHGA 4OFEA 1EBMA 1KG4A 3OH6A 4E9HA 1RRQA 3IHOA 5AN4A 4UOBA 2ABKA 2JHJA 4PIIA 1P59A 2YG8A 1NGNA 1PU7A 3N5NX 3CWAA 2H56A 4B21A 1P7MA 4EA5A 5CHZA 2I5WA 3KNTA 1PU8A 1LWWA 2JHNA 3I0XA 3CW7A 3OGDA 4EVVA 2NOLA 1PU6A 1KG5A 1KG3A 1NKUA 4EW4A 4EA4A 1LWYA 1MUDA 4OFHA 4YOQA 2NOEA 4E9FA 4DK9A 1KQJA 2NOIA 4EJZA 2NOFA 4B22A 3FHFA 4B24A 1N39A 1N3CA 4YPHA 1WEIA 1MUNA 3D4VA 1N3AA 1XG7A 1HU0A 3CWTA 1XQOA 4UNFA 1YQMA 3F0ZA 1VRLA 3CVSA 2XHIA 4E9EA 1RRSA 4E9GA 1KO9A 1LMZA 5DPKA 3CWSA 2YG9A 4AI4A 1ORPA 1KG2A 3OH9A 1PVSA 4AI5A 3N0UA 4EJYA 2NOZA 1MUYA 3S6IA 1WEFA 1YQKA 1WEGA 2NOHA 3FSPA 4HSBA 1DIZA 4AIAA 1M3QA 3I0WA 3F10A 1KG6A 5KN9A 1YQLA 3G0QA 4EW0A 1MPGA 4YPRA 1M3HA 3KTUA 1YQRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OFK A;  2OFI A;  1ORN A;  3IH7 A;  1LWV A;  5KN8 A;  4B23 A;  1FN7 A;  4OFA A;  3CWU A;  1KEA A;  1XQP A;  3CVT A;  2NOB A;  2JG6 A;  1KG7 A;  3FHG A;  4OFE A;  1EBM A;  1KG4 A;  3OH6 A;  4E9H A;  1RRQ A;  3IHO A;  5AN4 A;  4UOB A;  2ABK A;  2JHJ A;  4PII A;  1P59 A;  2YG8 A;  1NGN A;  1PU7 A;  3N5N X;  3CWA A;  2H56 A;  4B21 A;  1P7M A;  4EA5 A;  5CHZ A;  2I5W A;  3KNT A;  1PU8 A;  1LWW A;  2JHN A;  3I0X A;  3CW7 A;  3OGD A;  4EVV A;  2NOL A;  1PU6 A;  1KG5 A;  1KG3 A;  1NKU A;  4EW4 A;  4EA4 A;  1LWY A;  1MUD A;  4OFH A;  4YOQ A;  2NOE A;  4E9F A;  4DK9 A;  1KQJ A;  2NOI A;  4EJZ A;  2NOF A;  4B22 A;  3FHF A;  4B24 A;  1N39 A;  1N3C A;  4YPH A;  1WEI A;  1MUN A;  3D4V A;  1N3A A;  1XG7 A;  1HU0 A;  3CWT A;  1XQO A;  4UNF A;  1YQM A;  3F0Z A;  1VRL A;  3CVS A;  2XHI A;  4E9E A;  1RRS A;  4E9G A;  1KO9 A;  1LMZ A;  5DPK A;  3CWS A;  2YG9 A;  4AI4 A;  1ORP A;  1KG2 A;  3OH9 A;  1PVS A;  4AI5 A;  3N0U A;  4EJY A;  2NOZ A;  1MUY A;  3S6I A;  1WEF A;  1YQK A;  1WEG A;  2NOH A;  3FSP A;  4HSB A;  1DIZ A;  4AIA A;  1M3Q A;  3I0W A;  3F10 A;  1KG6 A;  5KN9 A;  1YQL A;  3G0Q A;  4EW0 A;  1MPG A;  4YPR A;  1M3H A;  3KTU A;  1YQR A; 
#chains in the Genus database with same CATH topology
 2OFK A;  2OFI A;  1ORN A;  3NNQ A;  4E7I A;  2W03 A;  4BE0 A;  3S3M A;  5FRM A;  3IH7 A;  1LWV A;  5KN8 A;  4B23 A;  1FN7 A;  4OFA A;  3OYE A;  3CWU A;  1KEA A;  1XQP A;  3OS0 A;  3CVT A;  2NOB A;  5FRN A;  2JG6 A;  1KG7 A;  4E7L A;  3FHG A;  4OFE A;  4BDZ A;  3OYI A;  1EBM A;  1KG4 A;  1U84 A;  3OH6 A;  4E9H A;  1RRQ A;  3IHO A;  3OYK A;  3L2V A;  5AN4 A;  4UOB A;  2ABK A;  2JHJ A;  5FRO A;  4PII A;  3L2U A;  1P59 A;  2YG8 A;  1NGN A;  1PU7 A;  3N5N X;  3CWA A;  2H56 A;  3OS2 A;  4B21 A;  1P7M A;  4EA5 A;  5CHZ A;  2I5W A;  3KNT A;  1PU8 A;  3L2R A;  1LWW A;  2JHN A;  3I0X A;  3CW7 A;  3OGD A;  4EVV A;  2NOL A;  3OYB A;  1PU6 A;  1KG5 A;  4BAC A;  1KG3 A;  1NKU A;  4EW4 A;  4EA4 A;  3S3N A;  1LWY A;  3OYL A;  3OYH A;  1MUD A;  4OFH A;  4YOQ A;  2NOE A;  4BE2 A;  4E9F A;  4DK9 A;  3OY9 A;  1KQJ A;  2NOI A;  4EJZ A;  2NOF A;  4B22 A;  3FHF A;  3OYM A;  4B24 A;  1N39 A;  1N3C A;  4YPH A;  1WEI A;  3OYC A;  4ZTF A;  1MUN A;  3OS1 A;  3D4V A;  1N3A A;  3S3O A;  3OYN A;  1XG7 A;  1HU0 A;  3CWT A;  1XQO A;  4UNF A;  1YQM A;  3F0Z A;  1VRL A;  3CVS A;  2V75 A;  2XHI A;  3OYA A;  4E7J A;  3OYG A;  4E9E A;  1RRS A;  4E9G A;  3OYJ A;  1KO9 A;  1LMZ A;  5DPK A;  4E7H A;  3OYD A;  3CWS A;  2W04 A;  2YG9 A;  3OYF A;  4AI4 A;  1ORP A;  1KG2 A;  3OH9 A;  1PVS A;  4AI5 A;  4E7K A;  3VW4 A;  4IKF A;  3N0U A;  4EJY A;  3LCN A;  4BDY A;  2NOZ A;  1MUY A;  3S6I A;  1WEF A;  3L2Q A;  1YQK A;  1WEG A;  2NOH A;  4BE1 A;  3FSP A;  4HSB A;  4NZG A;  1DIZ A;  3R2X C;  4AIA A;  1M3Q A;  3I0W A;  2JPS A;  4ZTJ A;  3F10 A;  1KG6 A;  5KN9 A;  1YQL A;  3G0Q A;  4EW0 A;  1MPG A;  4YPR A;  3L2W A;  1M3H A;  3KTU A;  1YQR A; 
#chains in the Genus database with same CATH homology
 2OFK A;  2OFI A;  1ORN A;  3IH7 A;  1LWV A;  5KN8 A;  4B23 A;  1FN7 A;  4OFA A;  3CWU A;  1KEA A;  1XQP A;  3CVT A;  2NOB A;  2JG6 A;  1KG7 A;  3FHG A;  4OFE A;  1EBM A;  1KG4 A;  3OH6 A;  4E9H A;  1RRQ A;  3IHO A;  5AN4 A;  4UOB A;  2ABK A;  2JHJ A;  4PII A;  1P59 A;  2YG8 A;  1NGN A;  1PU7 A;  3N5N X;  3CWA A;  2H56 A;  4B21 A;  1P7M A;  4EA5 A;  5CHZ A;  2I5W A;  3KNT A;  1PU8 A;  1LWW A;  2JHN A;  3I0X A;  3CW7 A;  3OGD A;  4EVV A;  2NOL A;  1PU6 A;  1KG5 A;  1KG3 A;  1NKU A;  4EW4 A;  4EA4 A;  1LWY A;  1MUD A;  4OFH A;  4YOQ A;  2NOE A;  4E9F A;  4DK9 A;  1KQJ A;  2NOI A;  4EJZ A;  2NOF A;  4B22 A;  3FHF A;  4B24 A;  1N39 A;  1N3C A;  4YPH A;  1WEI A;  1MUN A;  3D4V A;  1N3A A;  1XG7 A;  1HU0 A;  3CWT A;  1XQO A;  4UNF A;  1YQM A;  3F0Z A;  1VRL A;  3CVS A;  2XHI A;  4E9E A;  1RRS A;  4E9G A;  1KO9 A;  1LMZ A;  5DPK A;  3CWS A;  2YG9 A;  4AI4 A;  1ORP A;  1KG2 A;  3OH9 A;  1PVS A;  4AI5 A;  3N0U A;  4EJY A;  2NOZ A;  1MUY A;  3S6I A;  1WEF A;  1YQK A;  1WEG A;  2NOH A;  3FSP A;  4HSB A;  1DIZ A;  4AIA A;  1M3Q A;  3I0W A;  3F10 A;  1KG6 A;  5KN9 A;  1YQL A;  3G0Q A;  4EW0 A;  1MPG A;  4YPR A;  1M3H A;  3KTU A;  1YQR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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