1PU7A

Crystal structure of h.pylori 3-methyladenine dna glycosylase (magiii) bound to 3,9-dimethyladenine
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
215
structure length
214
Chain Sequence
LDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGIVEFSKQKLEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords 3-METHYLADENINE DNA GLYCOSYLASE
publication title Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases
pubmed doi rcsb
source organism Helicobacter pylori
total genus 85
structure length 214
sequence length 215
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1pu7A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1pu7A01
1PU7A 3KTUA 1N39A 1MUNA 1YQMA 2NOLA 2NOFA 3FHFA 1PU6A 1PU8A 2NOHA 1KG6A 1PVSA 1MUYA 2NOBA 3IHOA 3CWAA 1KG2A 1KG5A 1KG7A 3D4VA 1N3AA 1NKUA 3OGDA 3G0QA 3S6IA 1MPGA 3KNTA 3CVTA 1LWYA 4PIIA 2OFIA 1RRQA 2JG6A 4B24A 1ORPA 5KN9A 4HSBA 1ORNA 4UOBA 1YQLA 2JHJA 2NOIA 3I0WA 1YQKA 1FN7A 4EJZA 1NGNA 1WEGA 5DPKA 1WEIA 2YG9A 4YPHA 1EBMA 1RRSA 1LWWA 4E9GA 4AI4A 4OFAA 1VRLA 4E9EA 4E9FA 5KN8A 4UNFA 1WEFA 1XG7A 3CVSA 4EA4A 3F0ZA 1YQRA 4AIAA 4EVVA 4B23A 4EW4A 1DIZA 4OFHA 1M3HA 3IH7A 2NOEA 1KQJA 3CW7A 5AN4A 5CHZA 4YOQA 1P59A 1KO9A 2XHIA 3CWUA 3CWTA 1MUDA 4OFEA 4EW0A 4DK9A 4AI5A 4EJYA 1LMZA 4EA5A 1HU0A 2YG8A 2ABKA 3N5NX 2H56A 1KEAA 1LWVA 1M3QA 1XQPA 2I5WA 4E9HA 3FHGA 2NOZA 1KG3A 3OH9A 3OH6A 1P7MA 1KG4A 2JHNA 4B22A 1XQOA 3N0UA 1N3CA 3CWSA 3I0XA 2OFKA 4B21A 3FSPA 4YPRA 3F10A
chains in the Genus database with same CATH superfamily
1PU7A 3NNQA 3KTUA 1N39A 1MUNA 1YQMA 2NOLA 4NZGA 2NOFA 3FHFA 3L2QA 1PU6A 4BE2A 4E7JA 1PU8A 2NOHA 3L2UA 1KG6A 1PVSA 2JPSA 4EJZA 1MUYA 2NOBA 3IHOA 3OS2A 3CWAA 1KG2A 1KG5A 1KG7A 3D4VA 4E7LA 1N3AA 2W04A 1NKUA 3OGDA 3G0QA 3S6IA 1MPGA 3KNTA 3LCNA 3CVTA 1LWYA 4E7HA 4PIIA 4BACA 1RRQA 2OFIA 2JG6A 3OYHA 4B24A 3OY9A 5KN9A 1ORPA 4HSBA 3OYBA 4BE0A 1ORNA 4UOBA 4ZTFA 3OS0A 1YQLA 3OYNA 2JHJA 2NOIA 3I0WA 1YQKA 1FN7A 3OYGA 1NGNA 1WEGA 3OS1A 1WEIA 5FROA 2YG9A 3L2WA 4ZTJA 3S3OA 4YPHA 5DPKA 1EBMA 1RRSA 1LWWA 4E9GA 4AI4A 4OFAA 1VRLA 4BDZA 4E9EA 4E9FA 5KN8A 4UNFA 1WEFA 1XG7A 3CVSA 4EA4A 3F0ZA 1YQRA 4AIAA 4EVVA 4B23A 4EW4A 3OYCA 1DIZA 4OFHA 3L2RA 1M3HA 3IH7A 3OYKA 2NOEA 3OYDA 1KQJA 3CW7A 5AN4A 5CHZA 4YOQA 5FRMA 3R2XC 3S3MA 1KO9A 1P59A 3S3NA 3L2VA 2XHIA 4IKFA 3CWUA 3OYEA 1MUDA 3CWTA 4OFEA 4EW0A 3OYAA 4DK9A 1U84A 4AI5A 4EJYA 1LMZA 4BDYA 4EA5A 1HU0A 2YG8A 2ABKA 3OYFA 3N5NX 3OYMA 2H56A 1KEAA 1LWVA 1M3QA 1XQPA 5FRNA 2I5WA 3OYIA 3FHGA 4E9HA 2NOZA 1KG3A 2V75A 3OH9A 3OH6A 1P7MA 1KG4A 2JHNA 4B22A 1XQOA 4E7KA 3N0UA 1N3CA 2W03A 3CWSA 3VW4A 4BE1A 3OYJA 4E7IA 3I0XA 2OFKA 4B21A 3OYLA 3FSPA 4YPRA 3F10A
chains in the Genus database with same CATH topology
1PU7A 3KTUA 1N39A 1MUNA 1YQMA 2NOLA 2NOFA 3FHFA 1PU6A 1PU8A 2NOHA 1KG6A 1PVSA 1MUYA 2NOBA 3IHOA 3CWAA 1KG2A 1KG5A 1KG7A 3D4VA 1N3AA 1NKUA 3OGDA 3G0QA 3S6IA 1MPGA 3KNTA 3CVTA 1LWYA 4PIIA 2OFIA 1RRQA 2JG6A 4B24A 1ORPA 5KN9A 4HSBA 1ORNA 4UOBA 1YQLA 2JHJA 2NOIA 3I0WA 1YQKA 1FN7A 4EJZA 1NGNA 1WEGA 5DPKA 1WEIA 2YG9A 4YPHA 1EBMA 1RRSA 1LWWA 4E9GA 4AI4A 4OFAA 1VRLA 4E9EA 4E9FA 5KN8A 4UNFA 1WEFA 1XG7A 3CVSA 4EA4A 3F0ZA 1YQRA 4AIAA 4EVVA 4B23A 4EW4A 1DIZA 4OFHA 1M3HA 3IH7A 2NOEA 1KQJA 3CW7A 5AN4A 5CHZA 4YOQA 1P59A 1KO9A 2XHIA 3CWUA 3CWTA 1MUDA 4OFEA 4EW0A 4DK9A 4AI5A 4EJYA 1LMZA 4EA5A 1HU0A 2YG8A 2ABKA 3N5NX 2H56A 1KEAA 1LWVA 1M3QA 1XQPA 2I5WA 4E9HA 3FHGA 2NOZA 1KG3A 3OH9A 3OH6A 1P7MA 1KG4A 2JHNA 4B22A 1XQOA 3N0UA 1N3CA 3CWSA 3I0XA 2OFKA 4B21A 3FSPA 4YPRA 3F10A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PU7 A;  3KTU A;  1N39 A;  1MUN A;  1YQM A;  2NOL A;  2NOF A;  3FHF A;  1PU6 A;  1PU8 A;  2NOH A;  1KG6 A;  1PVS A;  1MUY A;  2NOB A;  3IHO A;  3CWA A;  1KG2 A;  1KG5 A;  1KG7 A;  3D4V A;  1N3A A;  1NKU A;  3OGD A;  3G0Q A;  3S6I A;  1MPG A;  3KNT A;  3CVT A;  1LWY A;  4PII A;  2OFI A;  1RRQ A;  2JG6 A;  4B24 A;  1ORP A;  5KN9 A;  4HSB A;  1ORN A;  4UOB A;  1YQL A;  2JHJ A;  2NOI A;  3I0W A;  1YQK A;  1FN7 A;  4EJZ A;  1NGN A;  1WEG A;  5DPK A;  1WEI A;  2YG9 A;  4YPH A;  1EBM A;  1RRS A;  1LWW A;  4E9G A;  4AI4 A;  4OFA A;  1VRL A;  4E9E A;  4E9F A;  5KN8 A;  4UNF A;  1WEF A;  1XG7 A;  3CVS A;  4EA4 A;  3F0Z A;  1YQR A;  4AIA A;  4EVV A;  4B23 A;  4EW4 A;  1DIZ A;  4OFH A;  1M3H A;  3IH7 A;  2NOE A;  1KQJ A;  3CW7 A;  5AN4 A;  5CHZ A;  4YOQ A;  1P59 A;  1KO9 A;  2XHI A;  3CWU A;  3CWT A;  1MUD A;  4OFE A;  4EW0 A;  4DK9 A;  4AI5 A;  4EJY A;  1LMZ A;  4EA5 A;  1HU0 A;  2YG8 A;  2ABK A;  3N5N X;  2H56 A;  1KEA A;  1LWV A;  1M3Q A;  1XQP A;  2I5W A;  4E9H A;  3FHG A;  2NOZ A;  1KG3 A;  3OH9 A;  3OH6 A;  1P7M A;  1KG4 A;  2JHN A;  4B22 A;  1XQO A;  3N0U A;  1N3C A;  3CWS A;  3I0X A;  2OFK A;  4B21 A;  3FSP A;  4YPR A;  3F10 A; 
#chains in the Genus database with same CATH topology
 1PU7 A;  3NNQ A;  3KTU A;  1N39 A;  1MUN A;  1YQM A;  2NOL A;  4NZG A;  2NOF A;  3FHF A;  3L2Q A;  1PU6 A;  4BE2 A;  4E7J A;  1PU8 A;  2NOH A;  3L2U A;  1KG6 A;  1PVS A;  2JPS A;  4EJZ A;  1MUY A;  2NOB A;  3IHO A;  3OS2 A;  3CWA A;  1KG2 A;  1KG5 A;  1KG7 A;  3D4V A;  4E7L A;  1N3A A;  2W04 A;  1NKU A;  3OGD A;  3G0Q A;  3S6I A;  1MPG A;  3KNT A;  3LCN A;  3CVT A;  1LWY A;  4E7H A;  4PII A;  4BAC A;  1RRQ A;  2OFI A;  2JG6 A;  3OYH A;  4B24 A;  3OY9 A;  5KN9 A;  1ORP A;  4HSB A;  3OYB A;  4BE0 A;  1ORN A;  4UOB A;  4ZTF A;  3OS0 A;  1YQL A;  3OYN A;  2JHJ A;  2NOI A;  3I0W A;  1YQK A;  1FN7 A;  3OYG A;  1NGN A;  1WEG A;  3OS1 A;  1WEI A;  5FRO A;  2YG9 A;  3L2W A;  4ZTJ A;  3S3O A;  4YPH A;  5DPK A;  1EBM A;  1RRS A;  1LWW A;  4E9G A;  4AI4 A;  4OFA A;  1VRL A;  4BDZ A;  4E9E A;  4E9F A;  5KN8 A;  4UNF A;  1WEF A;  1XG7 A;  3CVS A;  4EA4 A;  3F0Z A;  1YQR A;  4AIA A;  4EVV A;  4B23 A;  4EW4 A;  3OYC A;  1DIZ A;  4OFH A;  3L2R A;  1M3H A;  3IH7 A;  3OYK A;  2NOE A;  3OYD A;  1KQJ A;  3CW7 A;  5AN4 A;  5CHZ A;  4YOQ A;  5FRM A;  3R2X C;  3S3M A;  1KO9 A;  1P59 A;  3S3N A;  3L2V A;  2XHI A;  4IKF A;  3CWU A;  3OYE A;  1MUD A;  3CWT A;  4OFE A;  4EW0 A;  3OYA A;  4DK9 A;  1U84 A;  4AI5 A;  4EJY A;  1LMZ A;  4BDY A;  4EA5 A;  1HU0 A;  2YG8 A;  2ABK A;  3OYF A;  3N5N X;  3OYM A;  2H56 A;  1KEA A;  1LWV A;  1M3Q A;  1XQP A;  5FRN A;  2I5W A;  3OYI A;  3FHG A;  4E9H A;  2NOZ A;  1KG3 A;  2V75 A;  3OH9 A;  3OH6 A;  1P7M A;  1KG4 A;  2JHN A;  4B22 A;  1XQO A;  4E7K A;  3N0U A;  1N3C A;  2W03 A;  3CWS A;  3VW4 A;  4BE1 A;  3OYJ A;  4E7I A;  3I0X A;  2OFK A;  4B21 A;  3OYL A;  3FSP A;  4YPR A;  3F10 A; 
#chains in the Genus database with same CATH homology
 1PU7 A;  3KTU A;  1N39 A;  1MUN A;  1YQM A;  2NOL A;  2NOF A;  3FHF A;  1PU6 A;  1PU8 A;  2NOH A;  1KG6 A;  1PVS A;  1MUY A;  2NOB A;  3IHO A;  3CWA A;  1KG2 A;  1KG5 A;  1KG7 A;  3D4V A;  1N3A A;  1NKU A;  3OGD A;  3G0Q A;  3S6I A;  1MPG A;  3KNT A;  3CVT A;  1LWY A;  4PII A;  2OFI A;  1RRQ A;  2JG6 A;  4B24 A;  1ORP A;  5KN9 A;  4HSB A;  1ORN A;  4UOB A;  1YQL A;  2JHJ A;  2NOI A;  3I0W A;  1YQK A;  1FN7 A;  4EJZ A;  1NGN A;  1WEG A;  5DPK A;  1WEI A;  2YG9 A;  4YPH A;  1EBM A;  1RRS A;  1LWW A;  4E9G A;  4AI4 A;  4OFA A;  1VRL A;  4E9E A;  4E9F A;  5KN8 A;  4UNF A;  1WEF A;  1XG7 A;  3CVS A;  4EA4 A;  3F0Z A;  1YQR A;  4AIA A;  4EVV A;  4B23 A;  4EW4 A;  1DIZ A;  4OFH A;  1M3H A;  3IH7 A;  2NOE A;  1KQJ A;  3CW7 A;  5AN4 A;  5CHZ A;  4YOQ A;  1P59 A;  1KO9 A;  2XHI A;  3CWU A;  3CWT A;  1MUD A;  4OFE A;  4EW0 A;  4DK9 A;  4AI5 A;  4EJY A;  1LMZ A;  4EA5 A;  1HU0 A;  2YG8 A;  2ABK A;  3N5N X;  2H56 A;  1KEA A;  1LWV A;  1M3Q A;  1XQP A;  2I5W A;  4E9H A;  3FHG A;  2NOZ A;  1KG3 A;  3OH9 A;  3OH6 A;  1P7M A;  1KG4 A;  2JHN A;  4B22 A;  1XQO A;  3N0U A;  1N3C A;  3CWS A;  3I0X A;  2OFK A;  4B21 A;  3FSP A;  4YPR A;  3F10 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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