1PU7A

Crystal structure of h.pylori 3-methyladenine dna glycosylase (magiii) bound to 3,9-dimethyladenine
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
215
structure length
214
Chain Sequence
LDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGIVEFSKQKLEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 3-METHYLADENINE DNA GLYCOSYLASE
publication title Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases
pubmed doi rcsb
source organism Helicobacter pylori
molecule tags Hydrolase
total genus 85
structure length 214
sequence length 215
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00633 HHH Helix-hairpin-helix motif
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1pu7A02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1pu7A01
3CVSA 3KTUA 2OFIA 2ABKA 1NGNA 2NOLA 1KG3A 4EA4A 4B23A 3IH7A 2NOIA 1KG4A 1WEGA 4AI4A 1DIZA 3CWTA 1YQLA 1P7MA 1RRQA 1RRSA 4B22A 3D4VA 3CWUA 2NOZA 3CVTA 1LWWA 2NOEA 4UNFA 1MPGA 4OFEA 1MUDA 1YQRA 1N39A 3OGDA 1MUYA 4HSBA 3FHGA 2I5WA 1NKUA 3FSPA 3I0XA 1PVSA 1XQOA 1MUNA 4UOBA 1KG6A 2OFKA 1KEAA 4EW4A 3OH6A 4DK9A 2XHIA 4EVVA 5AN4A 3I0WA 4EJYA 4OFHA 3KNTA 4B24A 1P59A 5CHZA 4YPRA 1FN7A 1EBMA 4OFAA 5KN8A 3CWSA 1XQPA 1ORNA 4E9EA 4B21A 4AI5A 4YOQA 1PU7A 2JG6A 5DPKA 3G0QA 2NOFA 1LWYA 3F10A 1M3QA 3N5NX 2JHNA 4PIIA 3S6IA 4EJZA 1KG2A 5KN9A 2NOHA 3IHOA 1YQKA 1M3HA 1PU8A 1WEFA 4E9FA 2NOBA 3FHFA 1XG7A 1N3AA 4E9HA 1WEIA 4E9GA 3N0UA 1LWVA 1ORPA 3F0ZA 4EW0A 1YQMA 3CW7A 2H56A 3OH9A 1KG7A 1KQJA 2JHJA 1VRLA 2YG8A 3CWAA 2YG9A 1HU0A 1KG5A 1N3CA 4EA5A 1LMZA 4YPHA 4AIAA 1PU6A 1KO9A
chains in the Genus database with same CATH superfamily
3CVSA 3KTUA 2OFIA 2ABKA 3S3OA 1NGNA 2NOLA 1KG3A 4EA4A 4B23A 3IH7A 3OYLA 2NOIA 3OYGA 1KG4A 1WEGA 4AI4A 1DIZA 3CWTA 1YQLA 3L2VA 1P7MA 1RRQA 1RRSA 4B22A 2W03A 3D4VA 3LCNA 3CWUA 4BDZA 3NNQA 2NOZA 3CVTA 1LWWA 3L2QA 3L2WA 4BACA 3R2XC 2NOEA 4UNFA 1MPGA 4OFEA 1MUDA 4BE1A 1YQRA 3VW4A 1N39A 3OGDA 1MUYA 4HSBA 3FHGA 2I5WA 1NKUA 3FSPA 3I0XA 1PVSA 1XQOA 1MUNA 4BE2A 4E7LA 4BE0A 4ZTJA 4UOBA 1KG6A 2OFKA 1KEAA 3OYDA 4EW4A 3OH6A 4DK9A 2XHIA 4EVVA 5AN4A 3I0WA 4BDYA 4EJYA 4OFHA 4ZTFA 4IKFA 3KNTA 4B24A 1P59A 5CHZA 4YPRA 3OYIA 3L2RA 1FN7A 3OYNA 1EBMA 4OFAA 5KN8A 4E7KA 5FRNA 3CWSA 3OYFA 3L2UA 1XQPA 1ORNA 4E9EA 4B21A 4AI5A 4YOQA 1PU7A 3OS0A 3OY9A 3OYMA 2JG6A 3OYEA 5DPKA 3G0QA 3OYAA 2NOFA 1LWYA 3F10A 1M3QA 3N5NX 2JHNA 4PIIA 3OYHA 3S6IA 3OYCA 2W04A 1KG2A 5KN9A 4EJZA 2NOHA 3OS1A 4E7JA 3S3MA 3IHOA 1YQKA 1M3HA 1PU8A 1WEFA 4E9FA 5FRMA 2NOBA 3OYKA 3FHFA 1XG7A 1N3AA 4E9HA 1WEIA 4E9GA 3N0UA 1LWVA 3OS2A 1ORPA 5FROA 1PU6A 3F0ZA 3S3NA 4EW0A 4E7IA 4NZGA 1YQMA 3OYJA 2JPSA 3CW7A 2H56A 4E7HA 3OH9A 1KG7A 1KQJA 2JHJA 1VRLA 2YG8A 3CWAA 1U84A 2YG9A 1HU0A 1KG5A 1N3CA 4EA5A 1LMZA 3OYBA 4YPHA 4AIAA 2V75A 1KO9A
chains in the Genus database with same CATH topology
3CVSA 3KTUA 2OFIA 2ABKA 1NGNA 2NOLA 1KG3A 4EA4A 4B23A 3IH7A 2NOIA 1KG4A 1WEGA 4AI4A 1DIZA 3CWTA 1YQLA 1P7MA 1RRQA 1RRSA 4B22A 3D4VA 3CWUA 2NOZA 3CVTA 1LWWA 2NOEA 4UNFA 1MPGA 4OFEA 1MUDA 1YQRA 1N39A 3OGDA 1MUYA 4HSBA 3FHGA 2I5WA 1NKUA 3FSPA 3I0XA 1PVSA 1XQOA 1MUNA 4UOBA 1KG6A 2OFKA 1KEAA 4EW4A 3OH6A 4DK9A 2XHIA 4EVVA 5AN4A 3I0WA 4EJYA 4OFHA 3KNTA 4B24A 1P59A 5CHZA 4YPRA 1FN7A 1EBMA 4OFAA 5KN8A 3CWSA 1XQPA 1ORNA 4E9EA 4B21A 4AI5A 4YOQA 1PU7A 2JG6A 5DPKA 3G0QA 2NOFA 1LWYA 3F10A 1M3QA 3N5NX 2JHNA 4PIIA 3S6IA 4EJZA 1KG2A 5KN9A 2NOHA 3IHOA 1YQKA 1M3HA 1PU8A 1WEFA 4E9FA 2NOBA 3FHFA 1XG7A 1N3AA 4E9HA 1WEIA 4E9GA 3N0UA 1LWVA 1ORPA 3F0ZA 4EW0A 1YQMA 3CW7A 2H56A 3OH9A 1KG7A 1KQJA 2JHJA 1VRLA 2YG8A 3CWAA 2YG9A 1HU0A 1KG5A 1N3CA 4EA5A 1LMZA 4YPHA 4AIAA 1PU6A 1KO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CVS A;  3KTU A;  2OFI A;  2ABK A;  1NGN A;  2NOL A;  1KG3 A;  4EA4 A;  4B23 A;  3IH7 A;  2NOI A;  1KG4 A;  1WEG A;  4AI4 A;  1DIZ A;  3CWT A;  1YQL A;  1P7M A;  1RRQ A;  1RRS A;  4B22 A;  3D4V A;  3CWU A;  2NOZ A;  3CVT A;  1LWW A;  2NOE A;  4UNF A;  1MPG A;  4OFE A;  1MUD A;  1YQR A;  1N39 A;  3OGD A;  1MUY A;  4HSB A;  3FHG A;  2I5W A;  1NKU A;  3FSP A;  3I0X A;  1PVS A;  1XQO A;  1MUN A;  4UOB A;  1KG6 A;  2OFK A;  1KEA A;  4EW4 A;  3OH6 A;  4DK9 A;  2XHI A;  4EVV A;  5AN4 A;  3I0W A;  4EJY A;  4OFH A;  3KNT A;  4B24 A;  1P59 A;  5CHZ A;  4YPR A;  1FN7 A;  1EBM A;  4OFA A;  5KN8 A;  3CWS A;  1XQP A;  1ORN A;  4E9E A;  4B21 A;  4AI5 A;  4YOQ A;  1PU7 A;  2JG6 A;  5DPK A;  3G0Q A;  2NOF A;  1LWY A;  3F10 A;  1M3Q A;  3N5N X;  2JHN A;  4PII A;  3S6I A;  4EJZ A;  1KG2 A;  5KN9 A;  2NOH A;  3IHO A;  1YQK A;  1M3H A;  1PU8 A;  1WEF A;  4E9F A;  2NOB A;  3FHF A;  1XG7 A;  1N3A A;  4E9H A;  1WEI A;  4E9G A;  3N0U A;  1LWV A;  1ORP A;  3F0Z A;  4EW0 A;  1YQM A;  3CW7 A;  2H56 A;  3OH9 A;  1KG7 A;  1KQJ A;  2JHJ A;  1VRL A;  2YG8 A;  3CWA A;  2YG9 A;  1HU0 A;  1KG5 A;  1N3C A;  4EA5 A;  1LMZ A;  4YPH A;  4AIA A;  1PU6 A;  1KO9 A; 
#chains in the Genus database with same CATH topology
 3CVS A;  3KTU A;  2OFI A;  2ABK A;  3S3O A;  1NGN A;  2NOL A;  1KG3 A;  4EA4 A;  4B23 A;  3IH7 A;  3OYL A;  2NOI A;  3OYG A;  1KG4 A;  1WEG A;  4AI4 A;  1DIZ A;  3CWT A;  1YQL A;  3L2V A;  1P7M A;  1RRQ A;  1RRS A;  4B22 A;  2W03 A;  3D4V A;  3LCN A;  3CWU A;  4BDZ A;  3NNQ A;  2NOZ A;  3CVT A;  1LWW A;  3L2Q A;  3L2W A;  4BAC A;  3R2X C;  2NOE A;  4UNF A;  1MPG A;  4OFE A;  1MUD A;  4BE1 A;  1YQR A;  3VW4 A;  1N39 A;  3OGD A;  1MUY A;  4HSB A;  3FHG A;  2I5W A;  1NKU A;  3FSP A;  3I0X A;  1PVS A;  1XQO A;  1MUN A;  4BE2 A;  4E7L A;  4BE0 A;  4ZTJ A;  4UOB A;  1KG6 A;  2OFK A;  1KEA A;  3OYD A;  4EW4 A;  3OH6 A;  4DK9 A;  2XHI A;  4EVV A;  5AN4 A;  3I0W A;  4BDY A;  4EJY A;  4OFH A;  4ZTF A;  4IKF A;  3KNT A;  4B24 A;  1P59 A;  5CHZ A;  4YPR A;  3OYI A;  3L2R A;  1FN7 A;  3OYN A;  1EBM A;  4OFA A;  5KN8 A;  4E7K A;  5FRN A;  3CWS A;  3OYF A;  3L2U A;  1XQP A;  1ORN A;  4E9E A;  4B21 A;  4AI5 A;  4YOQ A;  1PU7 A;  3OS0 A;  3OY9 A;  3OYM A;  2JG6 A;  3OYE A;  5DPK A;  3G0Q A;  3OYA A;  2NOF A;  1LWY A;  3F10 A;  1M3Q A;  3N5N X;  2JHN A;  4PII A;  3OYH A;  3S6I A;  3OYC A;  2W04 A;  1KG2 A;  5KN9 A;  4EJZ A;  2NOH A;  3OS1 A;  4E7J A;  3S3M A;  3IHO A;  1YQK A;  1M3H A;  1PU8 A;  1WEF A;  4E9F A;  5FRM A;  2NOB A;  3OYK A;  3FHF A;  1XG7 A;  1N3A A;  4E9H A;  1WEI A;  4E9G A;  3N0U A;  1LWV A;  3OS2 A;  1ORP A;  5FRO A;  1PU6 A;  3F0Z A;  3S3N A;  4EW0 A;  4E7I A;  4NZG A;  1YQM A;  3OYJ A;  2JPS A;  3CW7 A;  2H56 A;  4E7H A;  3OH9 A;  1KG7 A;  1KQJ A;  2JHJ A;  1VRL A;  2YG8 A;  3CWA A;  1U84 A;  2YG9 A;  1HU0 A;  1KG5 A;  1N3C A;  4EA5 A;  1LMZ A;  3OYB A;  4YPH A;  4AIA A;  2V75 A;  1KO9 A; 
#chains in the Genus database with same CATH homology
 3CVS A;  3KTU A;  2OFI A;  2ABK A;  1NGN A;  2NOL A;  1KG3 A;  4EA4 A;  4B23 A;  3IH7 A;  2NOI A;  1KG4 A;  1WEG A;  4AI4 A;  1DIZ A;  3CWT A;  1YQL A;  1P7M A;  1RRQ A;  1RRS A;  4B22 A;  3D4V A;  3CWU A;  2NOZ A;  3CVT A;  1LWW A;  2NOE A;  4UNF A;  1MPG A;  4OFE A;  1MUD A;  1YQR A;  1N39 A;  3OGD A;  1MUY A;  4HSB A;  3FHG A;  2I5W A;  1NKU A;  3FSP A;  3I0X A;  1PVS A;  1XQO A;  1MUN A;  4UOB A;  1KG6 A;  2OFK A;  1KEA A;  4EW4 A;  3OH6 A;  4DK9 A;  2XHI A;  4EVV A;  5AN4 A;  3I0W A;  4EJY A;  4OFH A;  3KNT A;  4B24 A;  1P59 A;  5CHZ A;  4YPR A;  1FN7 A;  1EBM A;  4OFA A;  5KN8 A;  3CWS A;  1XQP A;  1ORN A;  4E9E A;  4B21 A;  4AI5 A;  4YOQ A;  1PU7 A;  2JG6 A;  5DPK A;  3G0Q A;  2NOF A;  1LWY A;  3F10 A;  1M3Q A;  3N5N X;  2JHN A;  4PII A;  3S6I A;  4EJZ A;  1KG2 A;  5KN9 A;  2NOH A;  3IHO A;  1YQK A;  1M3H A;  1PU8 A;  1WEF A;  4E9F A;  2NOB A;  3FHF A;  1XG7 A;  1N3A A;  4E9H A;  1WEI A;  4E9G A;  3N0U A;  1LWV A;  1ORP A;  3F0Z A;  4EW0 A;  1YQM A;  3CW7 A;  2H56 A;  3OH9 A;  1KG7 A;  1KQJ A;  2JHJ A;  1VRL A;  2YG8 A;  3CWA A;  2YG9 A;  1HU0 A;  1KG5 A;  1N3C A;  4EA5 A;  1LMZ A;  4YPH A;  4AIA A;  1PU6 A;  1KO9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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